Calcium in PDB 7p72: The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E

The structure of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E, PDB code: 7p72 was solved by G.Gogl, A.Cousido-Siah, G.Trave, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.99 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.17, 83.95, 106.59, 90, 90, 90
R / Rfree (%)	19.9 / 24

The binding sites of Calcium atom in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E (pdb code 7p72). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E, PDB code: 7p72:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:75.4 occ:1.00 O A:GLY171 2.5 49.0 1.0 O A:HOH697 2.5 44.2 1.0 OE2 A:GLU174 2.5 75.4 1.0 OE1 A:GLU174 2.6 71.2 1.0 O A:VAL172 2.7 50.5 1.0 CD A:GLU174 2.9 70.8 1.0 O A:HOH817 3.0 54.7 1.0 C A:GLY171 3.5 47.5 1.0 C A:VAL172 3.9 50.3 1.0 N A:VAL172 4.3 47.9 1.0 CA A:GLY171 4.3 52.9 1.0 CG A:GLU174 4.4 57.6 1.0 CA A:VAL172 4.5 45.4 1.0 CB A:VAL172 4.6 43.3 1.0 N A:GLU174 4.9 41.9 1.0 N A:ASP173 5.0 48.5 1.0

Calcium binding site 2 out of 5 in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:61.0 occ:1.00 O A:LYS209 2.5 50.0 1.0 O A:HOH811 2.5 55.4 1.0 O A:LEU212 2.5 43.2 1.0 OE1 A:GLU217 2.5 61.9 1.0 CD A:GLU217 3.5 57.4 1.0 NZ A:LYS209 3.5 92.5 1.0 C A:LEU212 3.7 43.9 1.0 C A:LYS209 3.7 43.8 1.0 OE2 A:GLU217 3.9 61.3 1.0 CD A:LYS209 4.1 77.4 1.0 CA A:SER213 4.1 44.5 1.0 CE A:LYS209 4.1 89.1 1.0 CB A:SER213 4.3 47.5 1.0 N A:SER213 4.4 42.3 1.0 CA A:SER210 4.5 39.7 1.0 O A:SER210 4.6 52.1 1.0 N A:SER210 4.6 35.2 1.0 C A:SER210 4.6 44.5 1.0 CG A:GLU217 4.7 45.0 1.0 CA A:LYS209 4.7 39.5 1.0 N A:LEU212 4.8 50.1 1.0 CA A:LEU212 4.9 46.8 1.0 CG A:LYS209 4.9 58.6 1.0

Calcium binding site 3 out of 5 in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:73.4 occ:1.00 O A:GLY241 2.3 57.5 1.0 OD1 A:ASP283 2.3 66.1 1.0 O A:GLY243 2.7 69.5 1.0 O A:MET239 3.1 54.0 1.0 C A:GLY241 3.4 74.7 1.0 CG A:ASP283 3.4 59.7 1.0 N A:GLY243 3.6 63.7 1.0 C A:GLY243 3.8 66.4 1.0 OD2 A:ASP283 3.9 68.1 1.0 C A:LEU242 4.0 78.2 1.0 CA A:LEU242 4.1 89.6 1.0 N A:LEU242 4.1 87.1 1.0 N A:GLY241 4.2 80.1 1.0 CA A:GLY243 4.2 68.2 1.0 C A:MET239 4.3 44.1 1.0 OG1 A:THR244 4.4 74.1 1.0 CA A:GLY241 4.4 78.0 1.0 C A:LYS240 4.6 80.1 1.0 CB A:ASP283 4.7 37.4 1.0 O A:LEU242 4.9 79.0 1.0 N A:THR244 5.0 60.0 1.0

Calcium binding site 4 out of 5 in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:46.6 occ:1.00 O A:HOH766 2.3 46.7 1.0 O A:GLY323 2.3 42.4 1.0 O A:GLY328 2.4 43.4 1.0 O A:ARG326 2.4 44.6 1.0 OE1 A:GLU368 2.4 41.0 1.0 O A:HOH722 2.5 48.0 1.0 OE2 A:GLU368 2.5 42.6 1.0 CD A:GLU368 2.8 40.4 1.0 C A:GLY323 3.3 36.2 1.0 C A:GLY328 3.4 49.0 1.0 C A:ARG326 3.5 49.4 1.0 N A:GLY328 3.6 49.8 1.0 C A:LYS327 4.0 50.5 1.0 CA A:GLY328 4.0 55.8 1.0 CA A:GLY323 4.1 32.9 1.0 N A:VAL324 4.1 38.2 1.0 CA A:VAL324 4.2 41.9 1.0 CA A:LYS327 4.2 52.3 1.0 O A:HOH614 4.2 51.0 1.0 OG1 A:THR329 4.3 44.5 1.0 CG A:GLU368 4.3 38.3 1.0 N A:LYS327 4.3 52.5 1.0 O A:VAL324 4.4 49.6 1.0 C A:VAL324 4.4 42.8 1.0 CG A:ARG326 4.5 41.2 1.0 N A:ARG326 4.5 47.1 1.0 N A:THR329 4.5 50.3 1.0 CA A:ARG326 4.6 41.4 1.0 O A:LYS327 4.7 44.9 1.0 CA A:THR329 4.9 48.6 1.0

Calcium binding site 5 out of 5 in the The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:33.9 occ:1.00 O A:GLY403 2.4 33.4 1.0 O A:MET399 2.4 33.0 1.0 O A:GLY401 2.4 31.4 1.0 OD2 A:ASP443 2.5 34.2 1.0 OD1 A:ASP443 2.6 40.8 1.0 CG A:ASP443 2.9 36.2 1.0 C A:MET399 3.4 29.5 1.0 C A:GLY403 3.5 29.7 1.0 C A:GLY401 3.7 35.0 1.0 CA A:MET399 4.0 30.0 1.0 N A:GLY403 4.0 30.8 1.0 N A:GLY401 4.2 37.7 1.0 C A:LYS402 4.2 34.1 1.0 CA A:GLY403 4.3 27.9 1.0 C A:LYS400 4.3 24.7 1.0 OG1 A:THR404 4.3 37.9 1.0 CB A:ASP443 4.4 38.8 1.0 O A:LYS400 4.5 34.3 1.0 N A:LYS400 4.5 26.4 1.0 CA A:GLY401 4.5 31.5 1.0 O A:HOH662 4.6 34.2 1.0 N A:THR404 4.6 29.4 1.0 N A:LYS402 4.6 35.0 1.0 CB A:MET399 4.6 27.9 1.0 O A:LYS402 4.7 37.5 1.0 CA A:LYS402 4.7 35.8 1.0 O A:HOH639 4.8 24.8 1.0 CA A:THR404 4.8 31.3 1.0 CA A:LYS400 4.9 28.3 1.0

G.Gogl, A.Cousido-Siah, G.Trave. The Pdz Domain of SNX27 Complexed with the Pdz-Binding Motif of Mers-E To Be Published.