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Calcium in PDB 7p7e: Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State

Other elements in 7p7e:

The structure of Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State also contains other interesting chemical elements:

Iron (Fe) 32 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State (pdb code 7p7e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State, PDB code: 7p7e:

Calcium binding site 1 out of 1 in 7p7e

Go back to Calcium Binding Sites List in 7p7e
Calcium binding site 1 out of 1 in the Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex I From E. Coli, Ddm/Lmng-Purified, Apo, Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1005

b:31.9
occ:1.00
OE2 G:GLU649 2.5 44.6 1.0
OD2 G:ASP619 2.5 55.3 1.0
OE1 G:GLN634 2.5 25.4 1.0
OD2 G:ASP733 2.5 27.0 1.0
O G:HOH1402 2.6 46.6 1.0
CG G:ASP733 3.5 39.3 1.0
CD G:GLU649 3.6 44.7 1.0
CG G:ASP619 3.6 52.8 1.0
OD1 G:ASP731 3.7 52.6 1.0
CB G:ASP733 3.7 30.6 1.0
CD G:GLN634 3.7 24.1 1.0
OE1 G:GLU649 4.1 40.5 1.0
OD1 G:ASP619 4.1 59.4 1.0
NH1 G:ARG652 4.2 29.9 1.0
CB G:GLN634 4.2 16.5 1.0
CG G:GLN634 4.6 27.7 1.0
NE2 G:GLN634 4.6 31.6 1.0
OD1 G:ASP733 4.6 44.3 1.0
CB G:ASP619 4.8 31.8 1.0
CG G:GLU649 4.8 29.9 1.0
CG G:ASP731 4.8 50.7 1.0
N G:ASP619 4.9 23.2 1.0

Reference:

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7
Page generated: Fri Jul 19 02:47:33 2024

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