Calcium in PDB 7pb7: Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium

The structure of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium, PDB code: 7pb7 was solved by K.Bjerregaard-Andersen, U.Krengel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.58 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.61, 45.2, 99.59, 90, 101.06, 90
R / Rfree (%)	17.9 / 22.8

The structure of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium also contains other interesting chemical elements:

Copper

(Cu)

2 atoms

The binding sites of Calcium atom in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium (pdb code 7pb7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium, PDB code: 7pb7:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:10.2 occ:1.00 O A:VAL186 2.3 8.5 1.0 OD1 A:ASP185 2.4 12.4 1.0 O A:THR189 2.4 10.3 1.0 O A:HOH530 2.5 12.2 1.0 OD2 A:ASP70 2.5 12.7 1.0 O A:ALA191 2.6 11.8 1.0 OD1 A:ASP70 2.6 14.1 1.0 CG A:ASP70 2.9 14.2 1.0 N A:ALA191 3.3 18.9 1.0 C A:VAL186 3.4 11.6 1.0 C A:ALA191 3.5 15.7 1.0 C A:THR189 3.5 12.6 1.0 CG A:ASP185 3.6 16.4 1.0 C A:ALA190 3.8 17.9 1.0 N A:VAL186 3.8 8.9 1.0 CA A:ALA191 4.0 16.3 1.0 CA A:ALA190 4.0 13.4 1.0 CA A:VAL186 4.1 10.0 1.0 O A:HOH447 4.1 19.9 1.0 OD2 A:ASP185 4.2 15.2 1.0 N A:ALA190 4.2 10.5 1.0 OG1 A:THR189 4.2 12.8 1.0 OG A:SER192 4.3 11.2 1.0 O A:HOH574 4.3 32.5 1.0 C A:ASP185 4.3 8.7 1.0 CB A:ASP70 4.4 10.4 1.0 CB A:VAL186 4.5 6.6 1.0 N A:SER192 4.5 10.0 1.0 O A:ALA190 4.5 10.5 1.0 N A:GLY187 4.5 10.8 1.0 N A:THR189 4.6 12.6 1.0 CA A:THR189 4.6 12.9 1.0 CA A:ASP185 4.6 10.9 1.0 CB A:ASP185 4.7 11.5 1.0 CA A:GLY187 4.8 13.3 1.0 O A:HOH446 4.9 20.8 1.0 O A:HOH424 4.9 27.1 1.0 CA A:SER192 5.0 8.2 1.0 O A:ASP185 5.0 11.0 1.0

Calcium binding site 2 out of 2 in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:12.5 occ:1.00 OD1 B:ASP185 2.3 12.5 1.0 O B:VAL186 2.4 12.7 1.0 O B:HOH540 2.4 15.9 1.0 O B:THR189 2.4 17.6 1.0 OD2 B:ASP70 2.5 13.4 1.0 OD1 B:ASP70 2.5 12.0 1.0 O B:ALA191 2.6 10.3 1.0 CG B:ASP70 2.8 19.1 1.0 N B:ALA191 3.4 14.2 1.0 C B:ALA191 3.5 13.8 1.0 CG B:ASP185 3.5 18.9 1.0 C B:VAL186 3.5 11.6 1.0 C B:THR189 3.5 19.6 1.0 C B:ALA190 3.8 10.6 1.0 N B:VAL186 3.8 9.7 1.0 O B:HOH433 4.0 17.1 1.0 CA B:ALA191 4.0 11.3 1.0 CA B:ALA190 4.1 18.0 1.0 OD2 B:ASP185 4.1 18.7 1.0 CA B:VAL186 4.2 9.4 1.0 N B:ALA190 4.2 11.9 1.0 OG1 B:THR189 4.3 13.8 1.0 OG B:SER192 4.3 13.1 1.0 CB B:ASP70 4.3 13.6 1.0 C B:ASP185 4.3 10.7 1.0 O B:ALA190 4.5 12.9 1.0 N B:SER192 4.5 11.7 1.0 O B:HOH600 4.6 31.3 1.0 CB B:VAL186 4.6 10.0 1.0 N B:THR189 4.6 18.8 1.0 N B:GLY187 4.6 11.2 1.0 CA B:ASP185 4.6 9.3 1.0 CA B:THR189 4.6 18.2 1.0 CB B:ASP185 4.6 6.8 1.0 O B:HOH419 4.8 20.6 1.0 CA B:GLY187 4.8 14.6 1.0 CA B:SER192 5.0 11.2 1.0 O B:ASP185 5.0 12.3 1.0

K.Bjerregaard-Andersen, U.Krengel. Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium To Be Published.