Calcium in PDB 7rwj: AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
Calcium Binding Sites:
The binding sites of Calcium atom in the AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
(pdb code 7rwj). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+, PDB code: 7rwj:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 7rwj
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Calcium Binding Sites List in 7rwj
Calcium binding site 1 out
of 4 in the AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:37.8
occ:1.00
|
OE2
|
B:GLU445
|
2.5
|
51.2
|
1.0
|
OD1
|
B:ASP511
|
2.6
|
30.0
|
1.0
|
OE2
|
B:GLU543
|
2.6
|
32.0
|
1.0
|
OD1
|
B:ASP547
|
2.6
|
31.7
|
1.0
|
OE1
|
B:GLU514
|
2.6
|
30.1
|
1.0
|
OD2
|
B:ASP547
|
2.7
|
31.7
|
1.0
|
CG
|
B:ASP547
|
3.0
|
31.7
|
1.0
|
CG
|
B:GLU543
|
3.3
|
32.0
|
1.0
|
CD
|
B:GLU543
|
3.3
|
32.0
|
1.0
|
CD
|
B:GLU445
|
3.4
|
51.2
|
1.0
|
CG
|
B:ASP511
|
3.7
|
30.0
|
1.0
|
OE1
|
B:GLU445
|
3.7
|
51.2
|
1.0
|
OH
|
B:TYR180
|
3.8
|
23.8
|
1.0
|
CD
|
B:GLU514
|
3.8
|
30.1
|
1.0
|
CB
|
B:ASP511
|
4.2
|
30.0
|
1.0
|
CE
|
B:MET515
|
4.4
|
26.3
|
1.0
|
OE1
|
B:GLU543
|
4.5
|
32.0
|
1.0
|
CA
|
B:ASP511
|
4.5
|
30.0
|
1.0
|
CB
|
B:ASP547
|
4.5
|
31.7
|
1.0
|
OE2
|
B:GLU514
|
4.5
|
30.1
|
1.0
|
OD2
|
B:ASP511
|
4.7
|
30.0
|
1.0
|
O
|
B:GLU543
|
4.7
|
32.0
|
1.0
|
CB
|
B:GLU514
|
4.7
|
30.1
|
1.0
|
CB
|
B:GLU543
|
4.7
|
32.0
|
1.0
|
CA
|
B:CA802
|
4.8
|
46.9
|
1.0
|
CG
|
B:GLU445
|
4.8
|
51.2
|
1.0
|
CG
|
B:GLU514
|
4.9
|
30.1
|
1.0
|
O
|
B:ASP511
|
4.9
|
30.0
|
1.0
|
|
Calcium binding site 2 out
of 4 in 7rwj
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Calcium Binding Sites List in 7rwj
Calcium binding site 2 out
of 4 in the AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca802
b:46.9
occ:1.00
|
OE1
|
B:GLU543
|
2.6
|
32.0
|
1.0
|
CD
|
B:GLU543
|
3.0
|
32.0
|
1.0
|
OE2
|
B:GLU543
|
3.4
|
32.0
|
1.0
|
ND2
|
B:ASN539
|
3.8
|
27.0
|
1.0
|
CG
|
B:GLU543
|
3.8
|
32.0
|
1.0
|
OE1
|
B:GLU445
|
3.9
|
51.2
|
1.0
|
OD1
|
B:ASN539
|
4.0
|
27.0
|
1.0
|
N
|
B:PHE442
|
4.3
|
56.4
|
1.0
|
CG
|
B:ASN539
|
4.3
|
27.0
|
1.0
|
O
|
B:GLN438
|
4.4
|
39.9
|
1.0
|
CA
|
B:PHE442
|
4.4
|
56.4
|
1.0
|
CB
|
B:PHE442
|
4.5
|
56.4
|
1.0
|
OE1
|
B:GLU514
|
4.5
|
30.1
|
1.0
|
CB
|
B:GLU543
|
4.6
|
32.0
|
1.0
|
C
|
B:GLY441
|
4.7
|
54.4
|
1.0
|
CA
|
B:CA801
|
4.8
|
37.8
|
1.0
|
CD
|
B:GLU445
|
4.8
|
51.2
|
1.0
|
CG
|
B:GLN438
|
5.0
|
39.9
|
1.0
|
O
|
B:GLY441
|
5.0
|
54.4
|
1.0
|
|
Calcium binding site 3 out
of 4 in 7rwj
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Calcium Binding Sites List in 7rwj
Calcium binding site 3 out
of 4 in the AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca801
b:37.8
occ:1.00
|
OE2
|
A:GLU445
|
2.5
|
51.2
|
1.0
|
OD1
|
A:ASP511
|
2.6
|
30.0
|
1.0
|
OE2
|
A:GLU543
|
2.6
|
32.0
|
1.0
|
OD1
|
A:ASP547
|
2.6
|
31.7
|
1.0
|
OE1
|
A:GLU514
|
2.6
|
30.1
|
1.0
|
OD2
|
A:ASP547
|
2.7
|
31.7
|
1.0
|
CG
|
A:ASP547
|
3.0
|
31.7
|
1.0
|
CG
|
A:GLU543
|
3.3
|
32.0
|
1.0
|
CD
|
A:GLU543
|
3.3
|
32.0
|
1.0
|
CD
|
A:GLU445
|
3.4
|
51.2
|
1.0
|
CG
|
A:ASP511
|
3.7
|
30.0
|
1.0
|
OE1
|
A:GLU445
|
3.7
|
51.2
|
1.0
|
OH
|
A:TYR180
|
3.8
|
23.8
|
1.0
|
CD
|
A:GLU514
|
3.8
|
30.1
|
1.0
|
CB
|
A:ASP511
|
4.2
|
30.0
|
1.0
|
CE
|
A:MET515
|
4.4
|
26.3
|
1.0
|
OE1
|
A:GLU543
|
4.5
|
32.0
|
1.0
|
CB
|
A:ASP547
|
4.5
|
31.7
|
1.0
|
CA
|
A:ASP511
|
4.5
|
30.0
|
1.0
|
OE2
|
A:GLU514
|
4.5
|
30.1
|
1.0
|
OD2
|
A:ASP511
|
4.6
|
30.0
|
1.0
|
O
|
A:GLU543
|
4.7
|
32.0
|
1.0
|
CB
|
A:GLU514
|
4.7
|
30.1
|
1.0
|
CB
|
A:GLU543
|
4.7
|
32.0
|
1.0
|
CA
|
A:CA802
|
4.8
|
46.9
|
1.0
|
CG
|
A:GLU445
|
4.8
|
51.2
|
1.0
|
CG
|
A:GLU514
|
4.9
|
30.1
|
1.0
|
O
|
A:ASP511
|
4.9
|
30.0
|
1.0
|
|
Calcium binding site 4 out
of 4 in 7rwj
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Calcium Binding Sites List in 7rwj
Calcium binding site 4 out
of 4 in the AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of AFTMEM16 in C22 Lipid Nanodiscs with MSP2N2 Scaffold Protein in the Presnece of CA2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca802
b:46.9
occ:1.00
|
OE1
|
A:GLU543
|
2.6
|
32.0
|
1.0
|
CD
|
A:GLU543
|
3.0
|
32.0
|
1.0
|
OE2
|
A:GLU543
|
3.4
|
32.0
|
1.0
|
ND2
|
A:ASN539
|
3.8
|
27.0
|
1.0
|
CG
|
A:GLU543
|
3.8
|
32.0
|
1.0
|
OE1
|
A:GLU445
|
3.9
|
51.2
|
1.0
|
OD1
|
A:ASN539
|
4.0
|
27.0
|
1.0
|
N
|
A:PHE442
|
4.3
|
56.4
|
1.0
|
CG
|
A:ASN539
|
4.3
|
27.0
|
1.0
|
O
|
A:GLN438
|
4.4
|
39.9
|
1.0
|
CA
|
A:PHE442
|
4.4
|
56.4
|
1.0
|
CB
|
A:PHE442
|
4.5
|
56.4
|
1.0
|
OE1
|
A:GLU514
|
4.5
|
30.1
|
1.0
|
CB
|
A:GLU543
|
4.6
|
32.0
|
1.0
|
C
|
A:GLY441
|
4.7
|
54.4
|
1.0
|
CA
|
A:CA801
|
4.8
|
37.8
|
1.0
|
CD
|
A:GLU445
|
4.8
|
51.2
|
1.0
|
CG
|
A:GLN438
|
5.0
|
39.9
|
1.0
|
O
|
A:GLY441
|
5.0
|
54.4
|
1.0
|
|
Reference:
M.E.Falzone,
Z.Feng,
O.E.Alvarenga,
Y.Pan,
B.Lee,
X.Cheng,
E.Fortea,
S.Scheuring,
A.Accardi.
TMEM16 Scramblases Thin the Membrane to Enable Lipid Scrambling. Nat Commun V. 13 2604 2022.
ISSN: ESSN 2041-1723
PubMed: 35562175
DOI: 10.1038/S41467-022-30300-Z
Page generated: Fri Jul 19 03:51:36 2024
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