Atomistry » Calcium » PDB 7rcd-7s5k » 7s4z
Atomistry »
  Calcium »
    PDB 7rcd-7s5k »
      7s4z »

Calcium in PDB 7s4z: Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K

Enzymatic activity of Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K

All present enzymatic activity of Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K:
3.4.21.64;

Protein crystallography data

The structure of Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K, PDB code: 7s4z was solved by J.M.Martin-Garcia, S.Botha, H.Hu, R.Jernigan, A.Castellvi, S.Lisova, F.Gil, B.Calisto, I.Crespo, S.Roy-Chowdbury, A.Grieco, G.Ketawala, U.Weierstall, J.Spence, P.Fromme, N.Zatsepin, R.Boer, X.Carpena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.21 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.4, 68.4, 108.4, 90, 90, 90
R / Rfree (%) 16.5 / 19.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K (pdb code 7s4z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K, PDB code: 7s4z:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7s4z

Go back to Calcium Binding Sites List in 7s4z
Calcium binding site 1 out of 2 in the Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:41.0
occ:1.00
O A:HOH484 2.3 42.8 1.0
O A:HOH412 2.3 35.0 1.0
O A:THR16 2.4 34.9 1.0
OD1 A:ASP260 2.5 37.2 1.0
OD2 A:ASP260 2.6 36.6 1.0
CG A:ASP260 2.8 36.0 1.0
C A:THR16 3.6 34.7 1.0
CB A:ASP260 4.3 34.0 1.0
OD1 A:ASN257 4.4 33.9 1.0
CA A:THR16 4.4 33.8 1.0
CB A:THR16 4.4 34.5 1.0
N A:SER17 4.5 36.1 1.0
CA A:SER17 4.6 37.0 1.0
NH2 A:ARG12 4.7 29.3 1.0
CG A:ASN257 4.7 32.0 1.0
O A:HOH401 4.9 33.2 1.0

Calcium binding site 2 out of 2 in 7s4z

Go back to Calcium Binding Sites List in 7s4z
Calcium binding site 2 out of 2 in the Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Serial Macromolecular Crystallography at Alba Synchrotron Light Source - Proteinase K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:25.5
occ:1.00
O A:HOH454 2.3 29.1 1.0
O A:PRO175 2.4 26.7 1.0
O A:VAL177 2.4 28.3 1.0
OD2 A:ASP200 2.4 23.6 1.0
O A:HOH447 2.4 25.2 1.0
O A:HOH462 2.5 25.7 1.0
O A:HOH439 2.5 24.0 1.0
OD1 A:ASP200 2.6 27.9 1.0
CG A:ASP200 2.8 25.4 1.0
C A:PRO175 3.5 27.8 1.0
C A:VAL177 3.6 26.4 1.0
CA A:PRO175 4.2 28.2 1.0
N A:VAL177 4.2 27.7 1.0
CB A:ASP200 4.3 25.5 1.0
O A:VAL198 4.3 29.7 1.0
C A:SER176 4.5 27.9 1.0
CA A:CYS178 4.5 25.3 1.0
N A:SER176 4.5 27.0 1.0
N A:CYS178 4.5 24.6 1.0
O A:GLU174 4.6 26.9 1.0
CA A:VAL177 4.6 27.2 1.0
N A:THR179 4.6 25.0 1.0
O A:HOH444 4.7 32.8 1.0
CA A:SER176 4.8 27.9 1.0
OG1 A:THR179 4.8 24.6 1.0
SG A:CYS249 5.0 27.2 1.0
O A:SER176 5.0 27.5 1.0
O A:HOH485 5.0 51.3 1.0

Reference:

S.Botha, H.Hu, R.Jernigan, A.Castellvi, S.Lisova, F.Gil, B.Calisto, I.Crespo, S.Roy-Chowdbury, A.Grieco, G.Ketawala, U.Weierstall, J.Spence, P.Fromme, N.Zatsepin, R.Boer, X.Carpena, J.M.Martin-Garcia. Serial Macromolecular Crystallography at Alba To Be Published.
Page generated: Fri Jul 19 03:54:21 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy