Calcium in PDB 7sjk: Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus

The structure of Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus, PDB code: 7sjk was solved by L.Clark, F.Whelan, K.E.Atkin, A.S.Brentnall, E.J.Dodson, J.P.Turkenburg, J.R.Potts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.06 / 1.21
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.15, 66.689, 71.506, 90, 110.31, 90
R / Rfree (%)	12 / 15.8

The binding sites of Calcium atom in the Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus (pdb code 7sjk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus, PDB code: 7sjk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca700 b:9.4 occ:1.00 OD1 A:ASN509 2.3 12.0 1.0 O A:ALA507 2.4 9.3 1.0 O A:HOH874 2.4 9.6 1.0 OD1 A:ASP505 2.4 9.7 1.0 O A:HOH947 2.5 10.1 1.0 OD1 A:ASP519 2.5 9.2 1.0 OD2 A:ASP505 2.5 9.2 1.0 OD2 A:ASP519 2.5 9.8 1.0 CG A:ASP505 2.8 9.3 1.0 CG A:ASP519 2.9 9.6 1.0 C A:ALA507 3.5 9.1 1.0 CG A:ASN509 3.5 10.1 1.0 O A:LEU491 4.1 10.5 1.0 CA A:ALA507 4.2 9.8 1.0 CB A:ALA507 4.2 10.3 1.0 O A:HOH1094 4.2 17.5 1.0 N A:ALA507 4.2 9.7 1.0 N A:ASN509 4.3 10.1 1.0 CB A:ASN509 4.3 10.5 1.0 CB A:ASP505 4.3 9.2 1.0 CB A:ASP519 4.3 9.1 1.0 OH A:TYR536 4.4 9.0 1.0 OD2 A:ASP516 4.5 10.6 1.0 N A:TYR508 4.5 9.4 1.0 ND2 A:ASN509 4.5 11.3 1.0 O A:ASP470 4.7 8.7 1.0 CA A:TYR508 4.7 10.3 1.0 NZ A:LYS503 4.8 9.0 1.0 CE1 A:TYR536 4.9 9.0 1.0 C A:TYR508 5.0 9.8 1.0 CA A:ASN509 5.0 10.5 1.0

Calcium binding site 2 out of 2 in the Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca700 b:9.0 occ:1.00 OD1 B:ASN509 2.3 9.0 1.0 O B:ALA507 2.4 8.3 1.0 O B:HOH877 2.4 8.6 1.0 OD1 B:ASP505 2.4 9.0 1.0 O B:HOH979 2.5 8.9 1.0 OD2 B:ASP519 2.5 8.2 1.0 OD2 B:ASP505 2.5 8.4 1.0 OD1 B:ASP519 2.5 8.6 1.0 CG B:ASP519 2.8 7.9 1.0 CG B:ASP505 2.8 8.4 1.0 C B:ALA507 3.5 8.7 1.0 CG B:ASN509 3.5 8.4 1.0 O B:LEU491 4.0 9.4 1.0 CA B:ALA507 4.2 8.7 1.0 N B:ALA507 4.2 8.5 1.0 CB B:ALA507 4.2 9.5 1.0 N B:ASN509 4.2 8.6 1.0 O B:HOH1046 4.2 9.7 1.0 CB B:ASN509 4.3 9.2 1.0 CB B:ASP505 4.3 7.7 1.0 CB B:ASP519 4.3 8.9 1.0 OD2 B:ASP516 4.5 9.1 1.0 OH B:TYR536 4.5 9.4 1.0 N B:TYR508 4.5 8.6 1.0 ND2 B:ASN509 4.5 8.8 1.0 O B:ASP470 4.7 8.3 1.0 CA B:TYR508 4.8 8.4 1.0 NZ B:LYS503 4.8 8.8 1.0 CA B:ASN509 4.9 8.6 1.0 C B:TYR508 5.0 8.7 1.0 CE1 B:TYR536 5.0 8.7 1.0

L.Clark, F.Whelan, K.E.Atkin, A.S.Brentnall, E.J.Dodson, J.P.Turkenburg, J.R.Potts. Structure of Pls A-Domain (Residues 391-656) From Staphylococcus Aureus To Be Published.