Calcium in PDB 7st4: Calcium-Saturated JGCAMP8.410.80

The structure of Calcium-Saturated JGCAMP8.410.80, PDB code: 7st4 was solved by Y.Zhang, L.L.Looger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.39 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	120.597, 120.597, 97.876, 90, 90, 90
R / Rfree (%)	17.5 / 19.7

The binding sites of Calcium atom in the Calcium-Saturated JGCAMP8.410.80 (pdb code 7st4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Calcium-Saturated JGCAMP8.410.80, PDB code: 7st4:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Calcium-Saturated JGCAMP8.410.80


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Saturated JGCAMP8.410.80 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:24.0 occ:1.00 OD1 A:ASP294 2.2 25.4 1.0 OD1 A:ASP296 2.3 27.3 1.0 O A:THR300 2.3 24.8 1.0 OD1 A:ASP298 2.3 25.4 1.0 O A:HOH749 2.4 30.1 1.0 OE2 A:GLU305 2.4 30.3 1.0 OE1 A:GLU305 2.5 29.3 1.0 CD A:GLU305 2.8 30.8 1.0 CG A:ASP296 3.3 32.1 1.0 CG A:ASP298 3.3 26.2 1.0 CG A:ASP294 3.4 25.1 1.0 C A:THR300 3.5 28.1 1.0 OD2 A:ASP296 3.7 29.7 1.0 OD2 A:ASP298 3.9 27.3 1.0 CA A:ASP294 4.0 26.6 1.0 N A:THR300 4.1 24.2 1.0 N A:ASP298 4.1 24.0 1.0 CB A:ASP294 4.1 27.1 1.0 CG A:GLU305 4.3 28.9 1.0 OD2 A:ASP294 4.3 23.7 1.0 CA A:THR300 4.4 27.0 1.0 CB A:ASP298 4.4 23.9 1.0 C A:ASP294 4.4 26.9 1.0 N A:ASP296 4.4 29.0 1.0 O A:HOH613 4.4 36.9 1.0 N A:ILE301 4.4 25.1 1.0 CA A:ILE301 4.5 26.2 1.0 CB A:ASP296 4.6 29.3 1.0 CG2 A:THR300 4.6 37.1 1.0 CA A:ASP298 4.6 22.8 1.0 N A:LYS295 4.7 27.7 1.0 N A:GLY297 4.7 25.7 1.0 N A:GLY299 4.8 22.8 1.0 CA A:ASP296 4.8 28.1 1.0 O A:HOH671 4.9 31.5 1.0 O A:ASP294 4.9 25.9 1.0 C A:ASP296 4.9 26.9 1.0 C A:ASP298 4.9 22.4 1.0 CG2 A:THR302 5.0 27.9 1.0 N A:THR302 5.0 26.3 1.0

Calcium binding site 2 out of 4 in the Calcium-Saturated JGCAMP8.410.80


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Saturated JGCAMP8.410.80 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:28.9 occ:1.00 OD1 A:ASP332 2.1 31.4 1.0 OD1 A:ASP330 2.3 30.9 1.0 O A:THR336 2.3 28.8 1.0 O A:HOH694 2.3 33.1 1.0 OE1 A:GLU341 2.4 28.8 1.0 OD1 A:ASP334 2.4 36.1 1.0 OE2 A:GLU341 2.6 25.4 1.0 CD A:GLU341 2.8 25.1 1.0 CG A:ASP332 3.2 39.3 1.0 CG A:ASP334 3.2 39.1 1.0 CG A:ASP330 3.4 29.6 1.0 C A:THR336 3.5 25.9 1.0 OD2 A:ASP332 3.7 47.3 1.0 OD2 A:ASP334 3.8 46.6 1.0 OG1 A:THR336 4.1 30.9 1.0 N A:THR336 4.2 28.0 1.0 OD2 A:ASP330 4.2 29.1 1.0 CA A:ASP330 4.2 29.1 1.0 CB A:ASP330 4.2 29.6 1.0 N A:ASP334 4.2 32.6 1.0 CB A:ASP334 4.3 38.9 1.0 N A:ASP338 4.3 25.7 1.0 CG A:GLU341 4.3 24.9 1.0 N A:ASP332 4.3 31.7 1.0 CA A:THR336 4.4 27.6 1.0 N A:ILE337 4.4 26.8 1.0 CB A:ASP332 4.4 37.0 1.0 OD2 A:ASP338 4.5 35.1 1.0 N A:GLY333 4.5 30.9 1.0 C A:ASP330 4.5 27.9 1.0 CA A:ILE337 4.5 27.5 1.0 N A:ALA331 4.6 29.9 1.0 CG A:ASP338 4.7 34.9 1.0 CA A:ASP334 4.7 38.3 1.0 N A:GLY335 4.8 32.7 1.0 CA A:ASP332 4.8 34.6 1.0 O A:HOH668 4.8 38.9 1.0 CB A:THR336 4.9 33.4 1.0 C A:ILE337 4.9 27.3 1.0 C A:ASP332 4.9 39.2 1.0 CB A:ASP338 5.0 28.6 1.0 C A:ASP334 5.0 39.1 1.0

Calcium binding site 3 out of 4 in the Calcium-Saturated JGCAMP8.410.80


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Calcium-Saturated JGCAMP8.410.80 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:42.1 occ:1.00 O A:TYR373 2.2 38.1 1.0 OD1 A:ASP369 2.3 54.2 1.0 OD1 A:ASP367 2.4 43.4 1.0 OE2 A:GLU378 2.4 39.0 1.0 OE1 A:GLU378 2.4 39.8 1.0 OD1 A:ASN371 2.4 49.4 1.0 O A:HOH604 2.5 37.3 1.0 CD A:GLU378 2.7 35.1 1.0 CG A:ASP369 3.1 54.9 1.0 OD2 A:ASP369 3.4 50.8 1.0 C A:TYR373 3.4 34.6 1.0 CG A:ASN371 3.5 49.9 1.0 CG A:ASP367 3.6 45.4 1.0 O A:HOH602 4.1 45.7 1.0 CA A:ASP367 4.1 41.5 1.0 N A:TYR373 4.2 37.6 1.0 CG A:GLU378 4.2 37.4 1.0 ND2 A:ASN371 4.2 51.1 1.0 N A:ASN371 4.3 44.8 1.0 CA A:TYR373 4.3 38.9 1.0 N A:ILE374 4.4 36.6 1.0 CB A:ASP367 4.4 43.3 1.0 N A:ASP369 4.4 49.9 1.0 CB A:ASP369 4.4 50.0 1.0 O A:HOH645 4.4 46.2 1.0 C A:ASP367 4.4 39.7 1.0 OD2 A:ASP367 4.4 41.2 1.0 CB A:ASN371 4.5 48.2 1.0 CA A:ILE374 4.5 35.2 1.0 N A:GLY370 4.6 46.3 1.0 N A:SER375 4.7 39.3 1.0 CB A:TYR373 4.7 41.6 1.0 N A:LYS368 4.7 41.6 1.0 CA A:ASP369 4.8 48.2 1.0 N A:GLY372 4.8 42.5 1.0 CA A:ASN371 4.8 45.3 1.0 O A:ASP367 4.9 39.1 1.0 C A:ASP369 4.9 47.4 1.0

Calcium binding site 4 out of 4 in the Calcium-Saturated JGCAMP8.410.80


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Calcium-Saturated JGCAMP8.410.80 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:43.9 occ:1.00 OD1 A:ASP403 2.3 38.7 1.0 O A:GLN409 2.3 40.3 1.0 O A:HOH649 2.3 42.7 1.0 OD1 A:ASP407 2.4 42.8 1.0 OE1 A:GLU414 2.4 38.1 1.0 OE2 A:GLU414 2.5 52.1 1.0 OD1 A:ASP405 2.5 53.7 1.0 CD A:GLU414 2.8 40.9 1.0 CG A:ASP407 3.2 48.3 1.0 CG A:ASP405 3.3 42.0 1.0 CG A:ASP403 3.3 45.4 1.0 C A:GLN409 3.4 37.6 1.0 OD2 A:ASP407 3.5 42.3 1.0 OD2 A:ASP405 3.6 46.8 1.0 OD2 A:ASP403 4.1 47.6 1.0 N A:GLN409 4.1 41.9 1.0 CA A:ASP403 4.2 49.7 1.0 N A:ASP407 4.2 43.2 1.0 CB A:ASP403 4.2 47.4 1.0 N A:VAL410 4.3 37.8 1.0 CG A:GLU414 4.3 42.8 1.0 N A:ASP405 4.3 55.2 1.0 CA A:GLN409 4.3 39.8 1.0 CA A:VAL410 4.3 39.0 1.0 CB A:ASP407 4.4 44.4 1.0 N A:ASN411 4.4 37.1 1.0 CB A:ASP405 4.5 48.1 1.0 N A:GLY406 4.5 50.3 1.0 C A:ASP403 4.6 48.4 1.0 N A:ILE404 4.7 51.6 1.0 CA A:ASP407 4.7 39.4 1.0 CA A:ASP405 4.7 54.0 1.0 CB A:GLN409 4.8 43.8 1.0 C A:ASP405 4.8 52.1 1.0 N A:GLY408 4.8 42.5 1.0 ND2 A:ASN411 4.9 48.9 1.0 C A:VAL410 4.9 33.4 1.0 CG A:ASN411 5.0 49.8 1.0

Y.Zhang, L.L.Looger. Calcium-Saturated JGCAMP8.410.80 To Be Published.