Calcium in PDB 7suu: Crystal Structure of Mouse Cadherin-23 EC25-26

The structure of Crystal Structure of Mouse Cadherin-23 EC25-26, PDB code: 7suu was solved by M.D.Boyer, J.S.Sandhu, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.06 / 2.25
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	80.237, 88.488, 206.783, 90, 90, 90
R / Rfree (%)	19.8 / 25.3

The structure of Crystal Structure of Mouse Cadherin-23 EC25-26 also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Potassium	(K)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Mouse Cadherin-23 EC25-26 (pdb code 7suu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Crystal Structure of Mouse Cadherin-23 EC25-26, PDB code: 7suu:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2901 b:37.5 occ:1.00 O A:ASN2622 2.2 41.2 1.0 O A:ASN2584 2.3 51.5 1.0 OD1 A:ASN2582 2.4 38.5 1.0 OD2 A:ASP2616 2.4 44.7 1.0 OD2 A:ASP2672 2.5 32.9 1.0 OD2 A:ASP2618 2.5 46.2 1.0 OD1 A:ASP2616 2.5 39.2 1.0 CG A:ASP2616 2.8 39.2 1.0 C A:ASN2622 3.4 41.2 1.0 CG A:ASP2672 3.5 36.1 1.0 CG A:ASP2618 3.5 53.9 1.0 C A:ASN2584 3.5 59.1 1.0 CG A:ASN2582 3.5 51.6 1.0 CB A:ASP2618 3.7 51.0 1.0 CB A:ASP2672 3.8 36.0 1.0 ND2 A:ASN2582 3.9 45.5 1.0 CA A:ASN2622 4.2 45.6 1.0 CA A:ASN2584 4.3 63.5 1.0 CB A:ASP2616 4.3 38.8 1.0 N A:ASN2584 4.3 68.3 1.0 N A:GLY2623 4.3 41.9 1.0 CB A:ASN2622 4.4 46.7 1.0 N A:ARG2585 4.4 52.6 1.0 CB A:ASN2584 4.4 65.0 1.0 CA A:GLY2623 4.5 40.7 1.0 OD1 A:ASP2672 4.5 37.7 1.0 OD1 A:ASP2618 4.6 62.3 1.0 CA A:ARG2585 4.7 48.1 1.0 CB A:ASN2582 4.8 57.4 1.0 C A:ARG2585 5.0 40.9 1.0 CD A:PRO2586 5.0 39.1 1.0 CA A:ASP2618 5.0 51.4 1.0

Calcium binding site 2 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2902 b:32.6 occ:1.00 OD1 A:ASP2657 2.3 34.4 1.0 OE1 A:GLU2659 2.3 30.6 1.0 OD2 A:ASP2694 2.3 36.9 1.0 OE2 A:GLU2601 2.3 27.1 1.0 O A:HOH3076 2.5 31.6 1.0 OE2 A:GLU2602 2.5 34.3 1.0 CG A:ASP2694 3.2 37.3 1.0 CD A:GLU2601 3.3 27.1 1.0 CG A:ASP2657 3.3 33.5 1.0 OD1 A:ASP2694 3.3 32.9 1.0 CD A:GLU2659 3.5 31.4 1.0 CD A:GLU2602 3.5 32.9 1.0 OE1 A:GLU2601 3.7 27.7 1.0 CG A:GLU2602 3.8 33.6 1.0 CA A:CA2903 3.9 31.2 1.0 OD2 A:ASP2657 4.0 42.1 1.0 O A:HOH3003 4.1 37.2 1.0 N A:ARG2658 4.2 31.9 1.0 CA A:ASP2657 4.2 33.4 1.0 OD1 A:ASN2695 4.2 39.8 1.0 CB A:ASP2657 4.2 34.0 1.0 OE2 A:GLU2659 4.3 35.8 1.0 NH1 A:ARG2655 4.4 44.9 1.0 N A:GLU2659 4.4 36.3 1.0 CG A:GLU2659 4.4 36.5 1.0 CB A:GLU2659 4.4 37.3 1.0 CG A:GLU2601 4.5 28.6 1.0 C A:ASP2657 4.6 31.3 1.0 CB A:ASP2694 4.6 35.1 1.0 OE1 A:GLU2602 4.7 38.2 1.0

Calcium binding site 3 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2903 b:31.2 occ:1.00 OD1 A:ASP2734 2.3 33.0 1.0 OD1 A:ASP2694 2.3 32.9 1.0 OE2 A:GLU2659 2.3 35.8 1.0 OE1 A:GLU2601 2.4 27.7 1.0 O A:ILE2692 2.4 32.1 1.0 OD1 A:ASP2691 2.4 33.4 1.0 OE1 A:GLU2659 2.8 30.6 1.0 CD A:GLU2659 2.9 31.4 1.0 CG A:ASP2734 3.3 33.4 1.0 CD A:GLU2601 3.4 27.1 1.0 CG A:ASP2694 3.4 37.3 1.0 CG A:ASP2691 3.5 34.1 1.0 C A:ILE2692 3.6 34.8 1.0 OE2 A:GLU2601 3.7 27.1 1.0 N A:ILE2692 3.8 32.7 1.0 CA A:CA2902 3.9 32.6 1.0 OD1 A:ASN2695 3.9 39.8 1.0 OD2 A:ASP2694 4.0 36.9 1.0 OD2 A:ASP2691 4.0 30.7 1.0 CB A:ASP2734 4.0 32.6 1.0 N A:ASP2694 4.1 36.8 1.0 CA A:ASP2734 4.2 34.9 1.0 OD2 A:ASP2734 4.2 31.1 1.0 CA A:ILE2692 4.3 34.4 1.0 CG A:GLU2659 4.3 36.5 1.0 NE A:ARG2658 4.4 38.6 1.0 CG1 A:ILE2692 4.5 35.0 1.0 CA A:ASP2691 4.5 34.1 1.0 CB A:ASP2691 4.6 33.6 1.0 C A:ASP2691 4.6 32.6 1.0 CB A:ASP2694 4.6 35.1 1.0 N A:ASP2693 4.6 34.1 1.0 CG A:GLU2601 4.7 28.6 1.0 NH1 A:ARG2658 4.8 32.7 1.0 CA A:ASP2694 4.8 34.2 1.0 CA A:ASP2693 4.9 35.2 1.0

Calcium binding site 4 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2904 b:32.3 occ:1.00 O A:ASN2738 2.2 44.0 1.0 OD1 A:ASP2693 2.3 40.4 1.0 O A:ASN2695 2.3 34.0 1.0 OD2 A:ASP2732 2.4 38.6 1.0 O A:HOH3017 2.4 33.9 1.0 OD2 A:ASP2734 2.5 31.1 1.0 OD1 A:ASP2732 2.5 34.6 1.0 CG A:ASP2732 2.8 36.8 1.0 CG A:ASP2734 3.4 33.4 1.0 C A:ASN2695 3.4 31.0 1.0 C A:ASN2738 3.5 36.4 1.0 CG A:ASP2693 3.5 37.2 1.0 CB A:ASP2734 3.7 32.6 1.0 O A:HOH3008 4.1 38.0 1.0 OD2 A:ASP2693 4.1 39.3 1.0 N A:ASN2695 4.1 32.0 1.0 CA A:ASN2695 4.2 32.9 1.0 CB A:ASP2732 4.3 34.6 1.0 N A:ALA2739 4.3 35.2 1.0 CA A:ASN2738 4.4 37.6 1.0 N A:GLU2696 4.4 33.3 1.0 CA A:ALA2739 4.4 33.1 1.0 CB A:ASN2738 4.4 37.2 1.0 CA A:GLU2696 4.5 34.5 1.0 OG A:SER2784 4.5 31.1 1.0 CA A:ASP2693 4.5 35.2 1.0 CB A:ASP2693 4.5 35.3 1.0 OD1 A:ASP2734 4.6 33.0 1.0 CB A:ASN2695 4.6 32.9 1.0 C A:ASP2693 4.7 33.3 1.0 N A:ASP2694 4.9 36.8 1.0 CA A:ASP2734 4.9 34.9 1.0 N A:ASP2734 4.9 33.3 1.0 O A:HOH3035 5.0 29.1 1.0

Calcium binding site 5 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2905 b:46.2 occ:1.00 O A:ILE2816 2.3 50.5 1.0 OD1 A:ASP2815 2.4 39.9 1.0 OD1 A:ASP2818 2.4 48.3 1.0 OE2 A:GLU2716 2.5 39.0 1.0 OE1 A:GLU2771 2.6 49.4 1.0 OE2 A:GLU2771 3.0 43.5 1.0 CD A:GLU2771 3.1 49.5 1.0 CG A:ASP2815 3.4 45.9 1.0 CG A:ASP2818 3.5 46.7 1.0 C A:ILE2816 3.5 55.4 1.0 CD A:GLU2716 3.6 37.8 1.0 N A:ILE2816 3.8 45.5 1.0 OD2 A:ASP2815 3.9 59.6 1.0 OD2 A:ASP2818 4.0 35.8 1.0 OE1 A:GLU2716 4.0 37.0 1.0 CA A:CA2906 4.2 41.7 1.0 CA A:ILE2816 4.3 52.3 1.0 N A:ASP2818 4.3 67.0 1.0 CG A:GLU2771 4.5 45.3 1.0 CA A:ASP2815 4.5 43.5 1.0 CD A:ARG2770 4.6 36.6 1.0 N A:ASN2817 4.6 55.4 1.0 CB A:ASP2815 4.6 45.2 1.0 C A:ASP2815 4.6 42.1 1.0 CB A:ARG2770 4.7 37.4 1.0 CB A:ASP2818 4.7 53.2 1.0 CA A:ASN2817 4.8 68.6 1.0 O A:HOH3056 4.9 41.7 1.0 CG A:GLU2716 4.9 36.6 1.0 CB A:ILE2816 4.9 54.8 1.0 CG2 A:ILE2816 5.0 52.9 1.0

Calcium binding site 6 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2906 b:41.7 occ:1.00 OD2 A:ASP2818 2.0 35.8 1.0 OE2 A:GLU2771 2.2 43.5 1.0 OD1 A:ASP2769 2.2 40.0 1.0 OE1 A:GLU2716 2.6 37.0 1.0 NE2 A:HIS2717 2.7 39.0 1.0 CG A:ASP2818 3.0 46.7 1.0 CD A:GLU2716 3.3 37.8 1.0 OD1 A:ASP2818 3.4 48.3 1.0 CD2 A:HIS2717 3.4 36.9 1.0 CG A:ASP2769 3.5 43.4 1.0 CD A:GLU2771 3.5 49.5 1.0 OE2 A:GLU2716 3.6 39.0 1.0 CE1 A:HIS2717 3.7 38.0 1.0 N A:ARG2770 4.1 32.7 1.0 CA A:CA2905 4.2 46.2 1.0 OD2 A:ASP2769 4.3 50.2 1.0 N A:GLU2771 4.3 40.1 1.0 CA A:ASP2769 4.3 39.4 1.0 CB A:ASP2818 4.3 53.2 1.0 CB A:ASP2769 4.4 39.7 1.0 CG A:GLU2771 4.4 45.3 1.0 OE1 A:GLU2771 4.4 49.4 1.0 CB A:GLU2771 4.4 45.1 1.0 C A:ASP2769 4.6 34.5 1.0 CG A:GLU2716 4.6 36.6 1.0 CG A:HIS2717 4.7 36.6 1.0 ND1 A:HIS2717 4.8 38.3 1.0 CB A:ARG2770 4.9 37.4 1.0 CA A:ARG2770 5.0 34.3 1.0

Calcium binding site 7 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2901 b:32.0 occ:1.00 O B:ASN2584 2.2 31.0 1.0 OD1 B:ASN2582 2.3 30.4 1.0 OD2 B:ASP2672 2.4 28.9 1.0 O B:ASN2622 2.4 28.9 1.0 OD2 B:ASP2618 2.4 32.3 1.0 OD1 B:ASP2616 2.4 29.5 1.0 OD2 B:ASP2616 2.5 32.0 1.0 CG B:ASP2616 2.8 33.4 1.0 CG B:ASP2672 3.3 27.0 1.0 C B:ASN2584 3.4 29.8 1.0 CG B:ASP2618 3.4 34.8 1.0 CG B:ASN2582 3.5 33.8 1.0 C B:ASN2622 3.6 29.2 1.0 CB B:ASP2618 3.7 34.7 1.0 CB B:ASP2672 3.8 30.7 1.0 ND2 B:ASN2582 4.0 34.0 1.0 CA B:ASN2584 4.1 30.8 1.0 N B:ASN2584 4.1 29.3 1.0 CB B:ASN2584 4.2 33.7 1.0 OD1 B:ASP2672 4.3 26.9 1.0 CB B:ASP2616 4.3 32.6 1.0 CA B:ASN2622 4.4 33.9 1.0 N B:ARG2585 4.5 29.1 1.0 N B:GLY2623 4.5 31.8 1.0 OD1 B:ASP2618 4.6 35.4 1.0 CB B:ASN2622 4.6 35.2 1.0 CA B:GLY2623 4.7 31.0 1.0 CB B:ASN2582 4.7 35.9 1.0 CA B:ASN2582 4.8 33.2 1.0 CB B:TYR2679 4.8 38.6 1.0 N B:ASP2618 4.8 32.3 1.0 CA B:ARG2585 4.8 29.9 1.0 CA B:ASP2618 4.9 36.3 1.0 C B:ARG2585 5.0 30.3 1.0 CD B:PRO2586 5.0 30.6 1.0

Calcium binding site 8 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2902 b:27.2 occ:1.00 OE1 B:GLU2601 2.3 28.9 1.0 O B:ILE2692 2.3 28.4 1.0 OD1 B:ASP2691 2.3 23.4 1.0 OD1 B:ASP2734 2.4 30.3 1.0 OD1 B:ASP2694 2.4 29.0 1.0 OE1 B:GLU2659 2.5 28.7 1.0 OE2 B:GLU2659 2.8 30.5 1.0 CD B:GLU2659 2.9 27.7 1.0 CG B:ASP2734 3.3 28.8 1.0 CD B:GLU2601 3.3 24.4 1.0 CG B:ASP2691 3.4 31.5 1.0 CG B:ASP2694 3.4 25.8 1.0 C B:ILE2692 3.5 28.2 1.0 OE2 B:GLU2601 3.6 23.6 1.0 N B:ILE2692 3.8 27.0 1.0 ND2 B:ASN2695 3.8 24.0 1.0 OD2 B:ASP2694 3.9 25.9 1.0 CB B:ASP2734 4.0 27.6 1.0 OD2 B:ASP2691 4.0 31.4 1.0 CA B:CA2905 4.0 27.7 1.0 CA B:ASP2734 4.2 31.5 1.0 OD2 B:ASP2734 4.2 29.4 1.0 N B:ASP2694 4.2 26.8 1.0 CA B:ILE2692 4.3 28.7 1.0 CG B:GLU2659 4.4 27.8 1.0 NE B:ARG2658 4.5 30.3 1.0 CB B:ASP2691 4.5 28.9 1.0 CA B:ASP2691 4.5 28.3 1.0 N B:ASP2693 4.5 28.6 1.0 CG1 B:ILE2692 4.6 33.2 1.0 C B:ASP2691 4.6 26.9 1.0 CG B:GLU2601 4.6 26.4 1.0 CB B:ASP2694 4.7 26.2 1.0 CA B:ASP2693 4.8 30.1 1.0 NH1 B:ARG2658 4.8 33.7 1.0 CA B:ASP2694 4.9 26.6 1.0 C B:ASP2693 5.0 27.9 1.0

Calcium binding site 9 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2903 b:25.8 occ:1.00 O B:ASN2738 2.2 31.5 1.0 O B:ASN2695 2.3 25.5 1.0 O B:HOH3064 2.3 34.7 1.0 OD1 B:ASP2693 2.3 27.2 1.0 OD2 B:ASP2732 2.4 28.9 1.0 OD2 B:ASP2734 2.5 29.4 1.0 OD1 B:ASP2732 2.7 28.2 1.0 CG B:ASP2732 2.9 27.2 1.0 C B:ASN2695 3.4 23.7 1.0 CG B:ASP2693 3.4 29.6 1.0 CG B:ASP2734 3.4 28.8 1.0 C B:ASN2738 3.5 32.0 1.0 CB B:ASP2734 3.7 27.6 1.0 OD2 B:ASP2693 4.0 31.2 1.0 N B:ASN2695 4.1 23.1 1.0 O B:HOH3013 4.1 32.9 1.0 CA B:ASN2695 4.2 26.6 1.0 N B:GLU2696 4.3 28.6 1.0 CB B:ASP2732 4.4 27.3 1.0 N B:ALA2739 4.4 31.2 1.0 CA B:ASN2738 4.4 32.1 1.0 CA B:ALA2739 4.4 33.8 1.0 CA B:ASP2693 4.4 30.1 1.0 CA B:GLU2696 4.5 28.8 1.0 CB B:ASN2738 4.5 32.8 1.0 CB B:ASP2693 4.5 29.6 1.0 OD1 B:ASP2734 4.5 30.3 1.0 OG B:SER2784 4.6 32.2 1.0 CB B:ASN2695 4.6 23.6 1.0 O B:HOH3039 4.7 47.2 1.0 C B:ASP2693 4.7 27.9 1.0 OE1 B:GLU2696 4.8 38.3 1.0 N B:ASP2694 4.9 26.8 1.0

Calcium binding site 10 out of 14 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2904 b:32.0 occ:1.00 OD1 B:ASP2580 2.1 39.0 1.0 OD1 B:ASP2583 2.3 30.5 1.0 O B:VAL2581 2.3 32.9 1.0 OD1 B:ASP2618 2.3 35.4 1.0 O B:HOH3111 2.4 27.6 1.0 CG B:ASP2580 3.3 39.1 1.0 CG B:ASP2583 3.4 30.4 1.0 CG B:ASP2618 3.5 34.8 1.0 C B:VAL2581 3.5 34.1 1.0 N B:VAL2581 3.8 33.2 1.0 OD2 B:ASP2580 3.9 38.0 1.0 OD2 B:ASP2583 4.0 30.0 1.0 ND2 B:ASN2584 4.0 32.5 1.0 N B:ASP2583 4.0 28.4 1.0 CB B:ASP2618 4.2 34.7 1.0 CA B:VAL2581 4.3 35.7 1.0 CB B:ASP2580 4.4 35.4 1.0 OD2 B:ASP2618 4.4 32.3 1.0 CA B:ASP2618 4.4 36.3 1.0 CB B:ASP2583 4.5 29.6 1.0 N B:ASN2582 4.5 35.9 1.0 C B:ASP2580 4.5 37.5 1.0 CA B:ASP2580 4.5 39.3 1.0 CG2 B:VAL2581 4.7 41.2 1.0 CA B:ASP2583 4.8 28.6 1.0 CA B:ASN2582 4.8 33.2 1.0 C B:ASN2582 4.8 33.3 1.0

M.D.Boyer, J.S.Sandhu, M.Sotomayor. Crystal Structure of Mouse Cadherin-23 EC25-26 To Be Published.