Calcium in PDB 7sz8: Crystal Structure of Human CELSR1 EC4-7

The structure of Crystal Structure of Human CELSR1 EC4-7, PDB code: 7sz8 was solved by E.Tamilselvan, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.38 / 2.34
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	42.384, 76.943, 92.742, 89.83, 87.78, 76.24
R / Rfree (%)	21.3 / 27.9

The structure of Crystal Structure of Human CELSR1 EC4-7 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	2 atoms
Chlorine	(Cl)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Human CELSR1 EC4-7 (pdb code 7sz8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Crystal Structure of Human CELSR1 EC4-7, PDB code: 7sz8:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:67.8 occ:1.00 O A:ASN377 2.2 57.0 1.0 OD2 A:ASP441 2.3 54.5 1.0 OD1 A:ASP371 2.4 62.2 1.0 OD2 A:ASP371 2.5 59.4 1.0 OD2 A:ASP373 2.5 65.5 1.0 O A:ASN341 2.5 68.9 1.0 OD1 A:ASN339 2.5 69.1 1.0 CG A:ASP371 2.7 59.6 1.0 CG A:ASP441 3.4 55.3 1.0 C A:ASN377 3.4 58.6 1.0 CG A:ASN339 3.6 69.6 1.0 CG A:ASP373 3.6 66.2 1.0 C A:ASN341 3.7 71.2 1.0 CB A:ASP441 4.0 54.4 1.0 CE A:MET447 4.0 71.1 1.0 ND2 A:ASN339 4.0 68.3 1.0 N A:ASN341 4.1 73.0 1.0 CB A:ASP371 4.2 57.8 1.0 CB A:ASP373 4.2 65.7 1.0 CA A:ASN341 4.2 72.9 1.0 CA A:ASN377 4.2 61.0 1.0 CB A:ASN377 4.3 62.5 1.0 CB A:ASN341 4.4 73.4 1.0 N A:ALA378 4.4 57.4 1.0 OD1 A:ASP441 4.4 56.3 1.0 CA A:ALA378 4.6 56.7 1.0 OD1 A:ASP373 4.6 67.7 1.0 N A:GLU342 4.8 72.3 1.0 CB A:ASN339 4.9 72.1 1.0 N A:ASP373 4.9 66.6 1.0

Calcium binding site 2 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:21.4 occ:1.00 OD1 A:ASP495 2.0 26.9 1.0 OE2 A:GLU428 2.3 26.4 1.0 OE2 A:GLU356 2.3 26.0 1.0 O A:VAL460 2.4 24.8 1.0 OD1 A:ASP462 2.5 23.3 1.0 OD1 A:ASP459 2.6 25.7 1.0 OE1 A:GLU428 2.8 24.0 1.0 CD A:GLU428 2.8 26.0 1.0 CG A:ASP495 3.2 27.3 1.0 CD A:GLU356 3.4 24.4 1.0 CG A:ASP462 3.5 24.0 1.0 CG A:ASP459 3.5 27.6 1.0 C A:VAL460 3.6 26.2 1.0 OE1 A:GLU356 3.8 24.1 1.0 N A:VAL460 3.9 28.0 1.0 CA A:CA803 3.9 26.0 1.0 CB A:ASP495 4.0 27.8 1.0 OD2 A:ASP462 4.0 23.0 1.0 OD2 A:ASP459 4.1 27.5 1.0 ND2 A:ASN463 4.1 30.5 1.0 OD2 A:ASP495 4.1 25.3 1.0 N A:ASP462 4.1 25.7 1.0 CG A:GLU428 4.3 27.7 1.0 CA A:ASP495 4.3 29.2 1.0 CA A:VAL460 4.3 27.0 1.0 N A:ASN461 4.6 25.8 1.0 CB A:ASP462 4.6 24.1 1.0 NE A:ARG427 4.7 30.3 1.0 CG A:GLU356 4.7 23.8 1.0 CA A:ASP459 4.7 28.4 1.0 CB A:ASP459 4.7 29.1 1.0 C A:ASP459 4.8 29.1 1.0 NH2 A:ARG427 4.8 31.1 1.0 CA A:ASN461 4.8 26.0 1.0 CA A:ASP462 4.8 25.4 1.0 CB A:VAL460 4.9 27.3 1.0 CB A:ARG427 5.0 28.0 1.0 C A:ASN461 5.0 25.5 1.0

Calcium binding site 3 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca803 b:26.0 occ:1.00 OE1 A:GLU356 2.2 24.1 1.0 OE1 A:GLU428 2.3 24.0 1.0 OD1 A:ASP426 2.4 29.2 1.0 OD2 A:ASP462 2.5 23.0 1.0 O A:HOH981 2.5 20.5 1.0 O A:HOH970 2.5 14.4 1.0 CD A:GLU356 3.0 24.4 1.0 CG A:ASP462 3.2 24.0 1.0 OD1 A:ASP462 3.2 23.3 1.0 CG A:ASP426 3.3 28.8 1.0 OE2 A:GLU356 3.5 26.0 1.0 CD A:GLU428 3.5 26.0 1.0 CA A:ASP426 3.9 26.4 1.0 CA A:CA802 3.9 21.4 1.0 CB A:ASP426 4.0 28.0 1.0 N A:ARG427 4.1 27.0 1.0 OD2 A:ASP426 4.2 31.6 1.0 O A:HOH911 4.2 23.7 1.0 CG A:GLU356 4.2 23.8 1.0 C A:ASP426 4.3 26.7 1.0 OE2 A:GLU428 4.3 26.4 1.0 O A:HOH961 4.3 26.8 1.0 ND2 A:ASN463 4.4 30.5 1.0 N A:GLU428 4.4 27.3 1.0 O A:HOH917 4.4 29.2 1.0 O A:HOH972 4.4 22.1 1.0 O A:HOH958 4.4 18.7 1.0 CB A:GLU428 4.5 27.9 1.0 CG A:GLU428 4.5 27.7 1.0 CB A:ASP462 4.6 24.1 1.0 O A:HOH949 4.8 25.0 1.0 CB A:GLU356 4.9 24.1 1.0

Calcium binding site 4 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca804 b:27.5 occ:1.00 OD1 A:ASN461 2.3 26.0 1.0 OD2 A:ASP493 2.3 29.5 1.0 O A:ASN463 2.3 30.1 1.0 OD1 A:ASP493 2.4 30.3 1.0 OD2 A:ASP546 2.5 23.6 1.0 OD2 A:ASP495 2.6 25.3 1.0 OG A:SER498 2.7 35.4 1.0 CG A:ASP493 2.7 30.1 1.0 CG A:ASN461 3.4 26.7 1.0 CG A:ASP546 3.5 23.5 1.0 CB A:SER498 3.6 38.8 1.0 C A:ASN463 3.6 30.3 1.0 CG A:ASP495 3.6 27.3 1.0 CB A:ASP495 3.8 27.8 1.0 CB A:ASP546 3.9 23.5 1.0 ND2 A:ASN461 3.9 27.9 1.0 CB A:ASP493 4.2 30.3 1.0 N A:ASN463 4.2 27.5 1.0 CD A:ARG549 4.3 32.2 1.0 CA A:ASN463 4.3 29.4 1.0 CB A:ASN463 4.6 30.2 1.0 CB A:ASN461 4.6 26.1 1.0 OD1 A:ASP546 4.6 23.7 1.0 N A:ASP464 4.6 31.8 1.0 CA A:ASN461 4.7 26.0 1.0 OD1 A:ASP495 4.8 26.9 1.0 C A:ASP464 4.9 31.7 1.0 C A:ASN461 4.9 25.5 1.0 CA A:ASP464 4.9 31.8 1.0 CD A:PRO465 5.0 30.5 1.0 N A:ASP495 5.0 29.0 1.0 CA A:SER498 5.0 40.1 1.0 N A:PRO465 5.0 30.4 1.0 N A:ASP462 5.0 25.7 1.0

Calcium binding site 5 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca806 b:27.0 occ:1.00 O A:ASN601 2.2 25.8 1.0 OD1 A:ASN563 2.3 33.6 1.0 OD2 A:ASP597 2.3 26.3 1.0 OD2 A:ASP646 2.4 25.1 1.0 O A:HIS565 2.5 34.1 1.0 OD1 A:ASP595 2.5 26.8 1.0 OD2 A:ASP595 2.5 27.5 1.0 CG A:ASP595 2.8 26.9 1.0 CG A:ASP597 3.4 28.0 1.0 C A:ASN601 3.4 26.0 1.0 CG A:ASP646 3.4 24.0 1.0 CG A:ASN563 3.4 34.8 1.0 C A:HIS565 3.5 34.2 1.0 CB A:ASP597 3.7 27.7 1.0 CB A:ASP646 3.7 23.1 1.0 ND2 A:ASN563 4.0 35.0 1.0 CA A:ASN601 4.2 27.5 1.0 CA A:HIS565 4.2 34.0 1.0 N A:HIS565 4.3 33.1 1.0 CB A:ASP595 4.3 27.0 1.0 N A:ALA602 4.3 25.5 1.0 CB A:HIS565 4.4 34.5 1.0 CB A:ASN601 4.4 27.1 1.0 N A:ARG566 4.5 28.5 1.0 OD1 A:ASP646 4.5 23.4 1.0 OD1 A:ASP597 4.5 28.8 1.0 CA A:ALA602 4.6 25.4 1.0 CB A:ASN563 4.7 34.8 1.0 CD A:PRO567 4.7 26.7 1.0 CA A:ASN563 4.7 34.0 1.0 CA A:ARG566 4.8 28.5 1.0 N A:ASP597 4.8 28.6 1.0 CA A:ASP597 4.9 28.4 1.0 C A:ARG566 4.9 27.5 1.0 C A:ASN563 5.0 33.9 1.0 N A:PRO567 5.0 26.3 1.0

Calcium binding site 6 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca807 b:28.2 occ:1.00 O A:HOH964 2.0 23.1 1.0 O A:HOH983 2.1 32.5 1.0 OE2 A:GLU580 2.3 33.6 1.0 OD1 A:ASP631 2.4 31.9 1.0 OE1 A:GLU633 2.5 31.4 1.0 OD2 A:ASP667 2.6 28.9 1.0 OD1 A:ASP667 3.0 30.0 1.0 CG A:ASP667 3.1 30.6 1.0 CG A:ASP631 3.2 32.6 1.0 CD A:GLU580 3.3 34.9 1.0 CD A:GLU633 3.7 31.5 1.0 OD2 A:ASP631 3.8 35.7 1.0 OE1 A:GLU580 3.8 35.7 1.0 CA A:CA808 3.9 34.7 1.0 CB A:ASP631 4.0 31.8 1.0 CA A:ASP631 4.1 31.1 1.0 ND2 A:ASN668 4.3 30.9 1.0 N A:TYR632 4.3 31.0 1.0 N A:GLU633 4.4 32.3 1.0 O A:HOH969 4.4 36.1 1.0 CG A:GLU633 4.4 32.5 1.0 CB A:GLU633 4.5 32.0 1.0 CG A:GLU580 4.5 35.0 1.0 C A:ASP631 4.5 30.9 1.0 CB A:ASP667 4.6 32.4 1.0 OE2 A:GLU633 4.6 30.9 1.0

Calcium binding site 7 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca808 b:34.7 occ:1.00 OD1 A:ASP700 2.2 35.0 1.0 OD1 A:ASP664 2.2 34.9 1.0 OE1 A:GLU580 2.4 35.7 1.0 OD1 A:ASP667 2.4 30.0 1.0 OE1 A:GLU633 2.4 31.4 1.0 O A:ALA665 2.5 34.3 1.0 OE2 A:GLU633 2.7 30.9 1.0 CD A:GLU633 2.9 31.5 1.0 CG A:ASP700 3.3 34.5 1.0 CD A:GLU580 3.3 34.9 1.0 CG A:ASP664 3.4 36.2 1.0 CG A:ASP667 3.5 30.6 1.0 OE2 A:GLU580 3.7 33.6 1.0 C A:ALA665 3.7 35.8 1.0 N A:ALA665 3.8 34.1 1.0 ND2 A:ASN668 3.9 30.9 1.0 CA A:CA807 3.9 28.2 1.0 OD2 A:ASP667 4.1 28.9 1.0 N A:ASP667 4.1 34.4 1.0 OD2 A:ASP664 4.1 37.5 1.0 CB A:ASP700 4.2 34.9 1.0 OD2 A:ASP700 4.2 33.2 1.0 CG A:GLU633 4.3 32.5 1.0 CA A:ALA665 4.4 35.3 1.0 CA A:ASP700 4.4 35.4 1.0 CB A:ASP664 4.5 35.6 1.0 CA A:ASP664 4.6 34.4 1.0 CB A:TYR632 4.6 31.7 1.0 C A:ASP664 4.6 34.4 1.0 CB A:ASP667 4.6 32.4 1.0 CG A:GLU580 4.7 35.0 1.0 CA A:ASP667 4.8 33.9 1.0 N A:ASN666 4.8 36.8 1.0 O A:HOH983 4.8 32.5 1.0 CB A:ALA665 4.9 34.8 1.0 C A:ASP667 4.9 33.8 1.0 N A:ASN668 5.0 33.8 1.0

Calcium binding site 8 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca809 b:29.9 occ:1.00 OD2 A:ASP698 2.1 34.1 1.0 O A:ASN668 2.3 35.5 1.0 OD1 A:ASN666 2.3 37.9 1.0 O A:ASN704 2.4 39.4 1.0 OD2 A:ASP700 2.5 33.2 1.0 OD2 A:ASP752 2.5 38.0 1.0 OD1 A:ASP698 2.7 33.2 1.0 CG A:ASP698 2.7 33.5 1.0 CG A:ASP752 3.4 39.3 1.0 CG A:ASP700 3.4 34.5 1.0 CG A:ASN666 3.5 39.8 1.0 C A:ASN668 3.5 35.5 1.0 C A:ASN704 3.5 41.0 1.0 CB A:ASP700 3.7 34.9 1.0 CB A:ASP752 3.8 38.3 1.0 ND2 A:ASN666 4.1 41.5 1.0 CB A:ASP698 4.2 32.4 1.0 N A:ASN668 4.2 33.8 1.0 CA A:ASN668 4.2 34.1 1.0 CA A:ASN704 4.3 41.6 1.0 CB A:ASN668 4.4 32.7 1.0 OD1 A:ASP752 4.4 40.6 1.0 CB A:ASN704 4.5 41.5 1.0 N A:GLY705 4.5 43.1 1.0 N A:ALA669 4.5 34.2 1.0 OD1 A:ASP700 4.6 35.0 1.0 CB A:ASN666 4.7 39.1 1.0 CA A:ASN666 4.7 37.3 1.0 CA A:GLY705 4.7 42.6 1.0 CD1 A:LEU759 4.8 42.1 1.0 CD A:PRO670 4.8 36.0 1.0 CA A:ALA669 4.9 34.3 1.0 CA A:ASP700 4.9 35.4 1.0 N A:ASP700 4.9 34.4 1.0 C A:ASN666 5.0 36.4 1.0

Calcium binding site 9 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:58.3 occ:1.00 O B:ASN377 2.1 49.6 1.0 OD1 B:ASN339 2.2 66.3 1.0 O B:ASN341 2.4 64.2 1.0 OD1 B:ASP371 2.5 50.3 1.0 OD2 B:ASP371 2.6 50.7 1.0 OD2 B:ASP373 2.7 55.9 1.0 OD2 B:ASP441 2.8 54.1 1.0 CG B:ASP371 2.8 50.6 1.0 CG B:ASN339 3.3 67.1 1.0 C B:ASN377 3.3 51.4 1.0 CG B:ASP441 3.5 53.4 1.0 C B:ASN341 3.6 65.5 1.0 CG B:ASP373 3.6 56.0 1.0 ND2 B:ASN339 3.7 67.2 1.0 CB B:ASP441 3.9 52.2 1.0 CB B:ASP373 4.0 55.1 1.0 CA B:ASN377 4.0 53.2 1.0 CB B:ASN377 4.1 54.7 1.0 N B:ASN341 4.3 66.3 1.0 CB B:ASP371 4.3 50.7 1.0 OD1 B:ASP441 4.4 54.1 1.0 N B:ALA378 4.4 51.1 1.0 CA B:ASN341 4.4 66.4 1.0 CB B:ASN339 4.6 67.8 1.0 CD B:PRO343 4.6 59.7 1.0 CA B:ALA378 4.6 51.9 1.0 N B:GLU342 4.7 64.8 1.0 OD1 B:ASP373 4.7 58.9 1.0 CB B:ASN341 4.8 66.3 1.0 CA B:ASN339 4.9 68.3 1.0 CA B:GLU342 4.9 64.2 1.0 N B:ASP340 5.0 66.9 1.0 N B:PRO343 5.0 60.5 1.0 CG B:PRO343 5.0 58.5 1.0

Calcium binding site 10 out of 16 in the Crystal Structure of Human CELSR1 EC4-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Human CELSR1 EC4-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:43.5 occ:1.00 OD1 B:ASP495 2.2 49.3 1.0 O B:VAL460 2.3 40.5 1.0 OE1 B:GLU428 2.3 50.3 1.0 OD1 B:ASP459 2.4 49.1 1.0 OD1 B:ASP462 2.5 41.7 1.0 OE1 B:GLU356 2.6 49.6 1.0 OE2 B:GLU428 2.7 50.6 1.0 CD B:GLU428 2.8 52.1 1.0 CG B:ASP495 3.2 48.9 1.0 C B:VAL460 3.5 41.9 1.0 CD B:GLU356 3.5 48.0 1.0 CG B:ASP459 3.6 51.2 1.0 CG B:ASP462 3.6 42.1 1.0 N B:VAL460 3.7 44.8 1.0 OE2 B:GLU356 3.9 48.2 1.0 CB B:ASP495 3.9 49.8 1.0 OD2 B:ASP459 4.1 52.8 1.0 CA B:VAL460 4.1 43.6 1.0 CA B:CA803 4.1 59.1 1.0 CA B:ASP495 4.1 51.5 1.0 CG B:GLU428 4.2 54.9 1.0 ND2 B:ASN463 4.2 47.4 1.0 OD2 B:ASP495 4.2 46.7 1.0 OD2 B:ASP462 4.2 41.8 1.0 N B:ASP462 4.3 41.6 1.0 NE B:ARG427 4.4 55.5 1.0 N B:ASN461 4.6 41.3 1.0 CB B:VAL460 4.6 44.1 1.0 NH2 B:ARG427 4.7 58.4 1.0 CA B:ASP459 4.7 48.1 1.0 C B:ASP459 4.7 47.0 1.0 CB B:ASP459 4.7 50.3 1.0 CG B:GLU356 4.8 46.7 1.0 CB B:ASP462 4.8 42.2 1.0 CA B:ASN461 4.9 41.3 1.0 N B:ASP495 4.9 50.4 1.0 CB B:ARG427 5.0 50.9 1.0 CG1 B:VAL460 5.0 44.3 1.0

E.Tamilselvan, M.Sotomayor. Crystal Structure of Human CELSR1 EC4-7 To Be Published.