Calcium in PDB 7t4s: Cryoem Structure of the Hcmv Pentamer Gh/Gl/UL128/UL130/UL131A in Complex with NRP2 and Neutralizing Fabs 8I21 and 13H11

The binding sites of Calcium atom in the Cryoem Structure of the Hcmv Pentamer Gh/Gl/UL128/UL130/UL131A in Complex with NRP2 and Neutralizing Fabs 8I21 and 13H11 (pdb code 7t4s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryoem Structure of the Hcmv Pentamer Gh/Gl/UL128/UL130/UL131A in Complex with NRP2 and Neutralizing Fabs 8I21 and 13H11, PDB code: 7t4s:

Calcium binding site 1 out of 1 in the Cryoem Structure of the Hcmv Pentamer Gh/Gl/UL128/UL130/UL131A in Complex with NRP2 and Neutralizing Fabs 8I21 and 13H11


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of the Hcmv Pentamer Gh/Gl/UL128/UL130/UL131A in Complex with NRP2 and Neutralizing Fabs 8I21 and 13H11 within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca903 b:48.2 occ:1.00 OE2 F:GLU197 2.2 49.8 1.0 O F:VAL255 2.3 51.4 1.0 OD2 F:ASP211 2.4 48.7 1.0 OD1 F:ASP211 2.6 48.7 1.0 CG F:ASP211 2.8 48.7 1.0 N F:ASP252 3.0 51.5 1.0 CB F:ASP252 3.1 51.5 1.0 CA F:ASP252 3.4 51.5 1.0 C F:VAL255 3.5 51.4 1.0 CG2 F:THR251 3.5 49.4 1.0 CD F:GLU197 3.5 49.8 1.0 C F:ASP252 3.7 51.5 1.0 N F:VAL255 3.7 51.4 1.0 O F:ASP252 3.8 51.5 1.0 C F:THR251 4.1 49.4 1.0 CD2 F:HIS171 4.1 50.2 1.0 CA F:VAL255 4.1 51.4 1.0 OE1 F:GLU197 4.3 49.8 1.0 CG F:GLU197 4.3 49.8 1.0 CE1 F:TYR169 4.3 48.3 1.0 CB F:ASP211 4.3 48.7 1.0 CG F:ASP252 4.4 51.5 1.0 N F:ALA254 4.4 53.7 1.0 CA F:THR251 4.5 49.4 1.0 N F:MET253 4.5 54.5 1.0 N F:ALA256 4.5 49.4 1.0 OH F:TYR169 4.6 48.3 1.0 CB F:THR251 4.6 49.4 1.0 C F:ALA254 4.6 53.7 1.0 NZ C:LYS47 4.6 56.0 1.0 OD2 F:ASP252 4.6 51.5 1.0 CB F:VAL255 4.7 51.4 1.0 CA F:ALA256 4.8 49.4 1.0 C F:MET253 4.9 54.5 1.0 O F:TYR210 5.0 50.7 1.0 CZ F:TYR169 5.0 48.3 1.0 NE2 F:HIS171 5.0 50.2 1.0

M.Kschonsak, M.C.Johnson, R.Schelling, E.M.Green, L.Rouge, H.Ho, N.Patel, C.Kilic, E.Kraft, C.P.Arthur, A.L.Rohou, L.Comps-Agrar, N.Martinez-Martin, L.Perez, J.Payandeh, C.Ciferri. Structural Basis For Hcmv Pentamer Receptor Recognition and Antibody Neutralization. Sci Adv V. 8 M2536 2022.
ISSN: ESSN 2375-2548
PubMed: 35275719
DOI: 10.1126/SCIADV.ABM2536