Calcium in PDB 7t80: Crystal Structure of Mouse Cadherin-23 EC18-19

The structure of Crystal Structure of Mouse Cadherin-23 EC18-19, PDB code: 7t80 was solved by T.Harrison-Rawn, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.11 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.073, 76.073, 201.319, 90, 90, 120
R / Rfree (%)	20 / 23.2

The structure of Crystal Structure of Mouse Cadherin-23 EC18-19 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of Mouse Cadherin-23 EC18-19 (pdb code 7t80). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of Mouse Cadherin-23 EC18-19, PDB code: 7t80:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2101 b:41.8 occ:1.00 OD1 A:ASP1968 2.3 46.1 1.0 OE2 A:GLU1839 2.3 46.1 1.0 OD1 A:ASP1928 2.3 41.6 1.0 O A:GLU1929 2.4 46.2 1.0 OD1 A:ASP1931 2.4 40.9 1.0 OE1 A:GLU1894 2.5 39.8 1.0 OE2 A:GLU1894 2.6 40.3 1.0 CD A:GLU1894 2.9 46.1 1.0 CD A:GLU1839 3.4 45.9 1.0 CG A:ASP1968 3.5 48.4 1.0 CG A:ASP1928 3.5 45.6 1.0 CG A:ASP1931 3.5 48.5 1.0 C A:GLU1929 3.6 45.1 1.0 ND2 A:ASN1932 3.8 49.3 1.0 N A:GLU1929 3.8 47.9 1.0 OE1 A:GLU1839 3.9 39.3 1.0 CA A:CA2103 3.9 47.2 1.0 OD2 A:ASP1931 4.0 50.0 1.0 OD2 A:ASP1928 4.1 38.5 1.0 N A:ASP1931 4.1 49.4 1.0 CB A:ASP1968 4.2 49.6 1.0 CA A:ASP1968 4.3 48.8 1.0 CA A:GLU1929 4.3 49.5 1.0 CG A:GLU1894 4.3 47.3 1.0 NE A:ARG1893 4.4 46.4 1.0 OD2 A:ASP1968 4.5 45.2 1.0 CA A:ASP1928 4.6 44.3 1.0 C A:ASP1928 4.6 45.4 1.0 CB A:ASP1928 4.6 40.7 1.0 N A:ASN1930 4.7 39.8 1.0 CG A:GLU1839 4.7 47.4 1.0 CB A:ASP1931 4.7 46.5 1.0 CA A:ASP1931 4.9 49.5 1.0 CB A:ARG1893 4.9 44.6 1.0 CA A:ASN1930 4.9 49.7 1.0 CB A:GLU1929 4.9 52.7 1.0 O A:HOH2235 5.0 48.8 1.0 NH2 A:ARG1893 5.0 50.5 1.0

Calcium binding site 2 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2102 b:46.9 occ:1.00 OD2 A:ASP1966 2.3 44.3 1.0 OD2 A:ASP2022 2.3 37.8 1.0 O A:TYR1972 2.3 48.8 1.0 OD2 A:ASP1968 2.3 45.2 1.0 OD1 A:ASN1930 2.4 45.5 1.0 O A:ASN1932 2.4 41.6 1.0 OD1 A:ASP1966 2.6 44.0 1.0 CG A:ASP1966 2.8 48.5 1.0 CG A:ASP2022 3.4 42.1 1.0 CG A:ASP1968 3.4 48.4 1.0 C A:ASN1932 3.5 44.1 1.0 CG A:ASN1930 3.5 50.6 1.0 C A:TYR1972 3.5 47.3 1.0 CB A:ASP2022 3.8 41.9 1.0 CB A:ASP1968 3.9 49.6 1.0 ND2 A:ASN1930 4.1 57.3 1.0 CB A:TYR1972 4.2 53.4 1.0 CB A:ASP1966 4.3 44.9 1.0 N A:ASN1932 4.3 43.8 1.0 CA A:TYR1972 4.3 51.3 1.0 CA A:ASN1932 4.3 45.8 1.0 N A:HIS1933 4.4 46.8 1.0 OD1 A:ASP2022 4.5 41.7 1.0 N A:ALA1973 4.5 49.6 1.0 CA A:HIS1933 4.5 49.5 1.0 OD1 A:ASP1968 4.6 46.1 1.0 CB A:ASN1932 4.6 47.0 1.0 CA A:ALA1973 4.6 49.3 1.0 CA A:ASN1930 4.7 49.7 1.0 CB A:ASN1930 4.7 49.7 1.0 C A:ASN1930 4.9 48.1 1.0 N A:ASP1968 5.0 44.5 1.0

Calcium binding site 3 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2103 b:47.2 occ:1.00 OD2 A:ASP1931 2.1 50.0 1.0 OD1 A:ASP1892 2.3 49.3 1.0 OE2 A:GLU1894 2.3 40.3 1.0 O A:HOH2220 2.4 48.8 1.0 OE1 A:GLU1839 2.4 39.3 1.0 O A:HOH2235 2.4 48.8 1.0 CG A:ASP1931 2.9 48.5 1.0 OD1 A:ASP1931 3.1 40.9 1.0 CD A:GLU1839 3.2 45.9 1.0 CG A:ASP1892 3.4 51.3 1.0 CD A:GLU1894 3.6 46.1 1.0 OE2 A:GLU1839 3.6 46.1 1.0 CA A:CA2101 3.9 41.8 1.0 CA A:ASP1892 4.1 48.1 1.0 OD2 A:ASP1892 4.1 55.2 1.0 N A:ARG1893 4.2 41.5 1.0 CB A:ASP1892 4.2 47.1 1.0 ND2 A:ASN1932 4.3 49.3 1.0 CB A:ASP1931 4.3 46.5 1.0 CG A:GLU1894 4.4 47.3 1.0 CB A:GLU1894 4.4 47.8 1.0 OE1 A:GLU1894 4.5 39.8 1.0 CG A:GLU1839 4.5 47.4 1.0 C A:ASP1892 4.5 46.7 1.0 N A:GLU1894 4.5 43.9 1.0

Calcium binding site 4 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2101 b:46.5 occ:1.00 OD2 B:ASP1931 2.2 46.4 1.0 OE2 B:GLU1894 2.3 43.2 1.0 OE1 B:GLU1839 2.3 43.1 1.0 OD1 B:ASP1892 2.4 49.3 1.0 O B:HOH2221 2.4 47.1 1.0 O B:HOH2225 2.4 45.2 1.0 CG B:ASP1931 2.9 46.5 1.0 OD1 B:ASP1931 3.0 41.4 1.0 CD B:GLU1839 3.3 42.8 1.0 CG B:ASP1892 3.3 56.5 1.0 CD B:GLU1894 3.5 43.7 1.0 OE2 B:GLU1839 3.7 46.5 1.0 CA B:CA2102 4.0 42.9 1.0 CA B:ASP1892 4.1 52.0 1.0 OD2 B:ASP1892 4.1 53.5 1.0 O B:HOH2209 4.2 50.7 1.0 CB B:ASP1892 4.2 49.5 1.0 N B:ARG1893 4.2 41.0 1.0 OE1 B:GLU1894 4.2 40.6 1.0 ND2 B:ASN1932 4.3 43.0 1.0 CG B:GLU1839 4.4 39.3 1.0 CB B:ASP1931 4.4 42.4 1.0 N B:GLU1894 4.4 46.6 1.0 C B:ASP1892 4.5 44.9 1.0 CG B:GLU1894 4.5 41.0 1.0 CB B:GLU1894 4.5 42.0 1.0 CB B:GLU1839 5.0 40.9 1.0

Calcium binding site 5 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2102 b:42.9 occ:1.00 OD1 B:ASP1928 2.3 45.3 1.0 OE1 B:GLU1894 2.3 40.6 1.0 OD1 B:ASP1968 2.3 46.4 1.0 O B:GLU1929 2.3 45.1 1.0 OD1 B:ASP1931 2.4 41.4 1.0 OE2 B:GLU1839 2.4 46.5 1.0 CD B:GLU1894 2.9 43.7 1.0 OE2 B:GLU1894 3.0 43.2 1.0 CG B:ASP1928 3.3 46.6 1.0 CG B:ASP1968 3.4 47.3 1.0 CD B:GLU1839 3.4 42.8 1.0 C B:GLU1929 3.5 46.2 1.0 CG B:ASP1931 3.5 46.5 1.0 N B:GLU1929 3.7 45.8 1.0 OE1 B:GLU1839 3.8 43.1 1.0 OD2 B:ASP1928 3.8 46.4 1.0 ND2 B:ASN1932 3.9 43.0 1.0 CA B:CA2101 4.0 46.5 1.0 N B:ASP1931 4.1 42.8 1.0 CB B:ASP1968 4.1 48.2 1.0 OD2 B:ASP1931 4.2 46.4 1.0 CA B:GLU1929 4.2 48.4 1.0 OD2 B:ASP1968 4.3 47.0 1.0 CA B:ASP1968 4.3 46.6 1.0 CG B:GLU1894 4.4 41.0 1.0 C B:ASP1928 4.5 44.7 1.0 CA B:ASP1928 4.5 45.5 1.0 CB B:ASP1928 4.5 46.1 1.0 N B:ASN1930 4.6 45.1 1.0 NE B:ARG1893 4.6 51.0 1.0 CB B:ASP1931 4.6 42.4 1.0 CG B:GLU1839 4.8 39.3 1.0 CA B:ASP1931 4.8 44.0 1.0 NH2 B:ARG1893 4.8 49.0 1.0 CA B:ASN1930 4.9 42.1 1.0 CB B:GLU1929 4.9 51.0 1.0 C B:ASN1930 5.0 41.9 1.0

Calcium binding site 6 out of 6 in the Crystal Structure of Mouse Cadherin-23 EC18-19


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Mouse Cadherin-23 EC18-19 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2103 b:42.5 occ:1.00 O B:ASN1932 2.3 44.0 1.0 OD1 B:ASN1930 2.3 45.1 1.0 OD2 B:ASP2022 2.4 45.5 1.0 OD2 B:ASP1968 2.4 47.0 1.0 OD2 B:ASP1966 2.4 45.3 1.0 O B:TYR1972 2.4 44.9 1.0 OD1 B:ASP1966 2.5 43.4 1.0 CG B:ASP1966 2.8 45.2 1.0 C B:ASN1932 3.5 40.2 1.0 CG B:ASN1930 3.5 44.5 1.0 CG B:ASP2022 3.5 43.2 1.0 CG B:ASP1968 3.5 47.3 1.0 C B:TYR1972 3.7 47.5 1.0 CB B:ASP1968 3.9 48.2 1.0 CB B:ASP2022 4.0 43.6 1.0 ND2 B:ASN1930 4.1 50.5 1.0 N B:ASN1932 4.2 41.8 1.0 CA B:ASN1932 4.2 41.6 1.0 CB B:ASP1966 4.2 40.6 1.0 CB B:TYR1972 4.3 48.5 1.0 N B:HIS1933 4.4 44.4 1.0 CB B:ASN1932 4.4 42.6 1.0 CA B:TYR1972 4.5 45.1 1.0 CA B:HIS1933 4.5 46.2 1.0 OD1 B:ASP2022 4.5 47.9 1.0 OD1 B:ASP1968 4.6 46.4 1.0 N B:ALA1973 4.6 44.1 1.0 CB B:ASN1930 4.7 41.0 1.0 CA B:ASN1930 4.7 42.1 1.0 CA B:ALA1973 4.7 47.3 1.0 N B:ASP1968 5.0 41.9 1.0 C B:ASN1930 5.0 41.9 1.0

T.Harrison-Rawn, M.Sotomayor. Crystal Structure of Mouse Cadherin-23 EC18-19 To Be Published.