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Calcium in PDB 7ti7: Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp

Enzymatic activity of Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp

All present enzymatic activity of Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp:
6.3.2.9;

Protein crystallography data

The structure of Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp, PDB code: 7ti7 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.91 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.49, 91.82, 106.36, 90, 90, 90
R / Rfree (%) 15 / 17.3

Other elements in 7ti7:

The structure of Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp (pdb code 7ti7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp, PDB code: 7ti7:

Calcium binding site 1 out of 1 in 7ti7

Go back to Calcium Binding Sites List in 7ti7
Calcium binding site 1 out of 1 in the Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca506

b:34.3
occ:0.85
 O A:HOH609 2.1 40.8 1.0
OG A:SER117 2.3 15.7 0.3
OE2 A:GLU158 2.4 27.3 1.0
O3B A:ADP500 2.4 15.9 1.0
O A:HOH840 2.8 35.0 0.4
CD A:GLU158 3.4 24.0 1.0
PB A:ADP500 3.6 14.5 1.0
CB A:SER117 3.6 15.6 0.3
CB A:SER117 3.6 15.2 0.7
O1B A:ADP500 3.7 17.6 1.0
OE1 A:GLU158 3.8 26.4 1.0
OG A:SER117 3.8 15.3 0.7
O A:HOH723 3.9 34.7 1.0
NZ A:LYS323 4.0 18.1 0.5
N A:SER117 4.1 14.3 1.0
O A:HOH925 4.2 46.7 1.0
O A:HOH840 4.3 17.3 0.6
O A:HOH903 4.3 48.4 1.0
O A:HOH1087 4.3 28.0 1.0
CA A:SER117 4.4 15.1 0.3
CA A:SER117 4.4 14.6 0.7
O2B A:ADP500 4.4 13.9 1.0
CE A:LYS116 4.4 17.1 1.0
NZ A:LYS323 4.6 14.4 0.5
CB A:LYS116 4.6 15.7 1.0
CG A:GLU158 4.7 19.8 1.0
O A:HOH942 4.8 44.4 1.0
O3A A:ADP500 4.8 15.2 1.0
NZ A:LYS116 4.9 17.1 1.0
O1A A:ADP500 4.9 16.5 1.0

Reference:

J.Abendroth, N.D.Debouver, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of Udp-N-Acetylmuramoylalanine-D-Glutamate Ligase From Acinetobacter Baumannii AB5075-Uw in Complex with Adp To Be Published.
Page generated: Fri Jul 19 04:33:51 2024

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