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Calcium in PDB 7uii: Cryo-Em of Self-Assembled Cannula Cana

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em of Self-Assembled Cannula Cana (pdb code 7uii). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em of Self-Assembled Cannula Cana, PDB code: 7uii:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7uii

Go back to Calcium Binding Sites List in 7uii
Calcium binding site 1 out of 2 in the Cryo-Em of Self-Assembled Cannula Cana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em of Self-Assembled Cannula Cana within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca201

b:30.5
occ:1.00
OE2 a:GLU161 2.7 34.3 1.0
OE1 a:GLU164 2.7 35.6 1.0
O a:GLY37 2.8 34.5 1.0
CD a:GLU164 3.6 35.6 1.0
CG a:GLU164 3.8 35.6 1.0
C a:GLY37 3.8 34.5 1.0
CD a:GLU161 3.9 34.3 1.0
CA a:GLY37 4.1 34.5 1.0
O a:ALA162 4.3 34.0 1.0
CG a:GLU161 4.6 34.3 1.0
OE2 a:GLU164 4.7 35.6 1.0
OE1 a:GLU161 4.8 34.3 1.0
O a:HOH301 4.9 33.2 1.0
N a:ALA38 5.0 34.4 1.0

Calcium binding site 2 out of 2 in 7uii

Go back to Calcium Binding Sites List in 7uii
Calcium binding site 2 out of 2 in the Cryo-Em of Self-Assembled Cannula Cana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em of Self-Assembled Cannula Cana within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Ca202

b:36.5
occ:1.00
O a:GLN39 2.4 35.8 1.0
O a:HOH302 3.4 37.2 1.0
C a:GLN39 3.5 35.8 1.0
N a:GLN39 3.9 35.8 1.0
CA a:GLN39 4.1 35.8 1.0
CB a:GLN39 4.4 35.8 1.0
N a:GLY40 4.7 34.9 1.0
CA a:GLY40 4.9 34.9 1.0
CB a:ALA38 4.9 34.4 1.0

Reference:

F.Wang, J.G.Miller, E.H.Egelman, V.P.Conticello. Cryo-Em of Self-Assembled Cannula Cana To Be Published.
Page generated: Tue Apr 25 18:40:53 2023

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