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Calcium in PDB 7urp: Second Cohesin Module From SCA5 of Ruminococcus Bromii

Protein crystallography data

The structure of Second Cohesin Module From SCA5 of Ruminococcus Bromii, PDB code: 7urp was solved by F.Cerqueira, N.Koropatkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.07 / 1.03
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 120.57, 30.05, 49.94, 90, 94.53, 90
R / Rfree (%) 14.3 / 16.5

Other elements in 7urp:

The structure of Second Cohesin Module From SCA5 of Ruminococcus Bromii also contains other interesting chemical elements:

Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Second Cohesin Module From SCA5 of Ruminococcus Bromii (pdb code 7urp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Second Cohesin Module From SCA5 of Ruminococcus Bromii, PDB code: 7urp:

Calcium binding site 1 out of 1 in 7urp

Go back to Calcium Binding Sites List in 7urp
Calcium binding site 1 out of 1 in the Second Cohesin Module From SCA5 of Ruminococcus Bromii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Second Cohesin Module From SCA5 of Ruminococcus Bromii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca902

b:14.2
occ:1.00
OD1 A:ASN757 2.3 14.6 1.0
O A:VAL736 2.3 18.2 1.0
OD1 A:ASN738 2.3 14.5 1.0
O A:HOH1184 2.4 15.8 1.0
O A:HOH1022 2.5 16.3 1.0
C A:VAL736 3.3 19.0 1.0
CG A:ASN757 3.4 14.6 1.0
CG A:ASN738 3.4 14.0 1.0
CA A:VAL736 3.9 20.9 1.0
ND2 A:ASN738 3.9 14.9 1.0
CB A:ASN757 4.0 14.8 1.0
O A:ASP737 4.1 18.0 1.0
CA A:ASN757 4.1 14.5 1.0
O A:HOH1159 4.3 29.6 1.0
CG1 A:VAL736 4.3 27.3 1.0
C A:ASP737 4.3 18.0 1.0
N A:ASP737 4.4 20.6 1.0
ND2 A:ASN757 4.5 17.0 1.0
O A:ALA735 4.6 26.0 1.0
CB A:VAL736 4.7 24.6 1.0
CB A:ASN738 4.7 14.3 1.0
CA A:ASP737 4.7 22.2 1.0
N A:ASN738 4.8 16.6 1.0
CA A:ASN738 4.9 14.6 1.0
N A:ASN757 5.0 13.8 1.0

Reference:

F.Cerqueira, N.Koropatkin. Structures of Cohesin Modules From SCA5 of Ruminococcus Bromii To Be Published.
Page generated: Wed Jul 26 12:31:47 2023

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