Calcium in PDB 7usl: Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
33;
Binding sites:
The binding sites of Calcium atom in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
(pdb code 7usl). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 33 binding sites of Calcium where determined in the
Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab, PDB code: 7usl:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 1 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1201
b:49.3
occ:1.00
|
OD1
|
A:ASP584
|
2.4
|
53.2
|
1.0
|
OD1
|
A:ASP580
|
2.5
|
65.5
|
1.0
|
OD1
|
A:ASP576
|
2.6
|
57.2
|
1.0
|
O
|
A:LEU582
|
2.6
|
59.9
|
1.0
|
OD2
|
A:ASP584
|
2.9
|
53.2
|
1.0
|
CG
|
A:ASP584
|
3.0
|
53.2
|
1.0
|
OG1
|
A:THR578
|
3.3
|
60.8
|
1.0
|
CB
|
A:THR578
|
3.4
|
60.8
|
1.0
|
CG
|
A:ASP580
|
3.5
|
65.5
|
1.0
|
C
|
A:LEU582
|
3.6
|
59.9
|
1.0
|
CG
|
A:ASP576
|
3.7
|
57.2
|
1.0
|
OD2
|
A:ASP580
|
3.9
|
65.5
|
1.0
|
CB
|
A:LEU582
|
3.9
|
59.9
|
1.0
|
N
|
A:THR578
|
4.0
|
60.8
|
1.0
|
CA
|
A:LEU582
|
4.1
|
59.9
|
1.0
|
N
|
A:LEU582
|
4.1
|
59.9
|
1.0
|
CA
|
A:THR578
|
4.2
|
60.8
|
1.0
|
O
|
A:VAL583
|
4.2
|
53.6
|
1.0
|
OD2
|
A:ASP576
|
4.3
|
57.2
|
1.0
|
CB
|
A:ASP584
|
4.5
|
53.2
|
1.0
|
C
|
A:VAL583
|
4.5
|
53.6
|
1.0
|
CG2
|
A:THR578
|
4.5
|
60.8
|
1.0
|
CB
|
A:ASP576
|
4.6
|
57.2
|
1.0
|
N
|
A:VAL583
|
4.7
|
53.6
|
1.0
|
CB
|
A:ARG597
|
4.7
|
57.5
|
1.0
|
N
|
A:LEU577
|
4.7
|
55.1
|
1.0
|
C
|
A:THR578
|
4.8
|
60.8
|
1.0
|
CA
|
A:ASP576
|
4.8
|
57.2
|
1.0
|
N
|
A:ASP580
|
4.8
|
65.5
|
1.0
|
CG
|
A:ARG597
|
4.8
|
57.5
|
1.0
|
CB
|
A:ASP580
|
4.9
|
65.5
|
1.0
|
N
|
A:ASP584
|
4.9
|
53.2
|
1.0
|
N
|
A:MET579
|
5.0
|
67.8
|
1.0
|
|
Calcium binding site 2 out
of 33 in 7usl
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Calcium Binding Sites List in 7usl
Calcium binding site 2 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1202
b:54.5
occ:1.00
|
OD1
|
A:ASP517
|
2.4
|
55.2
|
1.0
|
OD1
|
A:ASP521
|
2.4
|
47.9
|
1.0
|
OD1
|
A:ASN515
|
2.4
|
51.9
|
1.0
|
O
|
A:LEU519
|
2.4
|
52.3
|
1.0
|
OD2
|
A:ASP521
|
2.6
|
47.9
|
1.0
|
CG
|
A:ASP521
|
2.8
|
47.9
|
1.0
|
OD1
|
A:ASP513
|
3.1
|
52.3
|
1.0
|
CG
|
A:ASP517
|
3.2
|
55.2
|
1.0
|
OD2
|
A:ASP517
|
3.3
|
55.2
|
1.0
|
C
|
A:LEU519
|
3.4
|
52.3
|
1.0
|
CG
|
A:ASN515
|
3.5
|
51.9
|
1.0
|
ND2
|
A:ASN515
|
3.9
|
51.9
|
1.0
|
CB
|
A:LEU519
|
4.0
|
52.3
|
1.0
|
CA
|
A:LEU519
|
4.0
|
52.3
|
1.0
|
N
|
A:LEU519
|
4.1
|
52.3
|
1.0
|
CG
|
A:ASP513
|
4.1
|
52.3
|
1.0
|
CB
|
A:ASP521
|
4.3
|
47.9
|
1.0
|
N
|
A:GLY541
|
4.3
|
53.7
|
1.0
|
C
|
A:THR520
|
4.5
|
51.4
|
1.0
|
ND1
|
A:HIS540
|
4.5
|
49.2
|
1.0
|
N
|
A:THR520
|
4.5
|
51.4
|
1.0
|
N
|
A:VAL514
|
4.5
|
49.5
|
1.0
|
CA
|
A:ASP513
|
4.5
|
52.3
|
1.0
|
N
|
A:ASN515
|
4.5
|
51.9
|
1.0
|
CB
|
A:ASP517
|
4.6
|
55.2
|
1.0
|
O
|
A:THR520
|
4.6
|
51.4
|
1.0
|
N
|
A:ASP521
|
4.6
|
47.9
|
1.0
|
O
|
A:GLY541
|
4.7
|
53.7
|
1.0
|
N
|
A:ASP517
|
4.7
|
55.2
|
1.0
|
CB
|
A:ASN515
|
4.8
|
51.9
|
1.0
|
CB
|
A:ASP513
|
4.8
|
52.3
|
1.0
|
CA
|
A:THR520
|
4.8
|
51.4
|
1.0
|
CA
|
A:ASP521
|
4.9
|
47.9
|
1.0
|
CB
|
A:HIS540
|
4.9
|
49.2
|
1.0
|
OD2
|
A:ASP513
|
5.0
|
52.3
|
1.0
|
|
Calcium binding site 3 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 3 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1203
b:47.0
occ:1.00
|
OD1
|
A:ASN453
|
2.4
|
52.5
|
1.0
|
O
|
A:SER455
|
2.4
|
52.1
|
1.0
|
OD1
|
A:ASP451
|
2.5
|
54.9
|
1.0
|
OD1
|
A:ASP457
|
2.5
|
51.4
|
1.0
|
OD1
|
A:ASP449
|
2.6
|
52.6
|
1.0
|
OG
|
A:SER455
|
3.0
|
52.1
|
1.0
|
OD2
|
A:ASP457
|
3.0
|
51.4
|
1.0
|
CG
|
A:ASP457
|
3.1
|
51.4
|
1.0
|
CG
|
A:ASP451
|
3.2
|
54.9
|
1.0
|
OD2
|
A:ASP451
|
3.2
|
54.9
|
1.0
|
CG
|
A:ASN453
|
3.3
|
52.5
|
1.0
|
C
|
A:SER455
|
3.6
|
52.1
|
1.0
|
CG
|
A:ASP449
|
3.7
|
52.6
|
1.0
|
ND2
|
A:ASN453
|
3.8
|
52.5
|
1.0
|
N
|
A:SER455
|
4.1
|
52.1
|
1.0
|
CB
|
A:SER455
|
4.1
|
52.1
|
1.0
|
CA
|
A:SER455
|
4.1
|
52.1
|
1.0
|
OD2
|
A:ASP449
|
4.3
|
52.6
|
1.0
|
CB
|
A:ASP457
|
4.5
|
51.4
|
1.0
|
CB
|
A:ASN453
|
4.6
|
52.5
|
1.0
|
N
|
A:ASP457
|
4.6
|
51.4
|
1.0
|
N
|
A:ASN453
|
4.7
|
52.5
|
1.0
|
N
|
A:THR456
|
4.7
|
51.3
|
1.0
|
C
|
A:THR456
|
4.7
|
51.3
|
1.0
|
CB
|
A:ASP451
|
4.7
|
54.9
|
1.0
|
N
|
A:ASP451
|
4.8
|
54.9
|
1.0
|
CB
|
A:ASP449
|
4.8
|
52.6
|
1.0
|
CA
|
A:ASP449
|
4.9
|
52.6
|
1.0
|
CA
|
A:ASP457
|
4.9
|
51.4
|
1.0
|
CA
|
A:THR456
|
5.0
|
51.3
|
1.0
|
O
|
A:THR456
|
5.0
|
51.3
|
1.0
|
N
|
A:GLY454
|
5.0
|
53.2
|
1.0
|
N
|
A:VAL450
|
5.0
|
52.4
|
1.0
|
|
Calcium binding site 4 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 4 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca801
b:49.3
occ:1.00
|
O
|
B:GLU325
|
2.6
|
63.8
|
1.0
|
O
|
B:SER116
|
2.7
|
51.8
|
1.0
|
OD2
|
B:ASP120
|
3.1
|
57.5
|
1.0
|
CG
|
B:ASP120
|
3.6
|
57.5
|
1.0
|
OD1
|
B:ASP120
|
3.7
|
57.5
|
1.0
|
C
|
B:GLU325
|
3.8
|
63.8
|
1.0
|
C
|
B:SER116
|
3.9
|
51.8
|
1.0
|
OE1
|
B:GLU325
|
3.9
|
63.8
|
1.0
|
CA
|
B:MET117
|
4.4
|
52.4
|
1.0
|
CE
|
B:MET117
|
4.4
|
52.4
|
1.0
|
CA
|
B:GLU325
|
4.5
|
63.8
|
1.0
|
N
|
B:MET117
|
4.6
|
52.4
|
1.0
|
N
|
B:ASP120
|
4.8
|
57.5
|
1.0
|
N
|
B:ASP326
|
4.8
|
66.4
|
1.0
|
CB
|
B:GLU325
|
4.8
|
63.8
|
1.0
|
CB
|
B:ASP120
|
4.9
|
57.5
|
1.0
|
CA
|
B:SER116
|
4.9
|
51.8
|
1.0
|
C
|
B:MET117
|
4.9
|
52.4
|
1.0
|
CB
|
B:ASP119
|
5.0
|
56.9
|
1.0
|
CA
|
B:ASP326
|
5.0
|
66.4
|
1.0
|
|
Calcium binding site 5 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 5 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1801
b:27.6
occ:1.00
|
O
|
C:GLY913
|
2.3
|
38.2
|
1.0
|
O
|
C:ALA883
|
2.4
|
40.3
|
1.0
|
OD1
|
C:ASP918
|
2.6
|
33.9
|
1.0
|
OD2
|
C:ASP918
|
3.1
|
33.9
|
1.0
|
CG
|
C:ASP918
|
3.2
|
33.9
|
1.0
|
N
|
C:ALA883
|
3.4
|
40.3
|
1.0
|
OD2
|
C:ASP880
|
3.4
|
41.0
|
1.0
|
C
|
C:ALA883
|
3.5
|
40.3
|
1.0
|
C
|
C:GLY913
|
3.5
|
38.2
|
1.0
|
OD1
|
C:ASP915
|
3.5
|
43.7
|
1.0
|
N
|
C:ASP915
|
3.7
|
43.7
|
1.0
|
N
|
C:GLY916
|
3.7
|
39.3
|
1.0
|
O
|
C:GLY881
|
3.9
|
41.2
|
1.0
|
CG
|
C:ASP880
|
3.9
|
41.0
|
1.0
|
OD1
|
C:ASP880
|
3.9
|
41.0
|
1.0
|
CA
|
C:ALA883
|
4.1
|
40.3
|
1.0
|
CA
|
C:GLY914
|
4.1
|
42.0
|
1.0
|
OG1
|
C:THR885
|
4.2
|
33.1
|
1.0
|
CA
|
C:ALA882
|
4.2
|
41.5
|
1.0
|
CG2
|
C:THR885
|
4.3
|
33.1
|
1.0
|
O
|
C:GLY916
|
4.3
|
39.3
|
1.0
|
C
|
C:ALA882
|
4.3
|
41.5
|
1.0
|
N
|
C:GLY914
|
4.3
|
42.0
|
1.0
|
C
|
C:GLY914
|
4.3
|
42.0
|
1.0
|
CA
|
C:GLY916
|
4.4
|
39.3
|
1.0
|
C
|
C:GLY881
|
4.4
|
41.2
|
1.0
|
C
|
C:GLY916
|
4.5
|
39.3
|
1.0
|
CA
|
C:GLY913
|
4.5
|
38.2
|
1.0
|
N
|
C:ALA882
|
4.5
|
41.5
|
1.0
|
C
|
C:ASP915
|
4.5
|
43.7
|
1.0
|
CB
|
C:ASP918
|
4.6
|
33.9
|
1.0
|
CA
|
C:ASP915
|
4.6
|
43.7
|
1.0
|
CA
|
C:CA1802
|
4.6
|
42.0
|
1.0
|
N
|
C:ASP884
|
4.6
|
37.5
|
1.0
|
N
|
C:THR885
|
4.6
|
33.1
|
1.0
|
CG
|
C:ASP915
|
4.7
|
43.7
|
1.0
|
CB
|
C:THR885
|
4.8
|
33.1
|
1.0
|
CA
|
C:ASP884
|
5.0
|
37.5
|
1.0
|
|
Calcium binding site 6 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 6 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1802
b:42.0
occ:1.00
|
O
|
C:ALA933
|
2.3
|
37.9
|
1.0
|
OD2
|
C:ASP918
|
2.3
|
33.9
|
1.0
|
O
|
C:GLY916
|
2.4
|
39.3
|
1.0
|
O
|
C:GLY931
|
2.4
|
37.3
|
1.0
|
OD1
|
C:ASN936
|
2.7
|
35.4
|
1.0
|
CG
|
C:ASP918
|
3.1
|
33.9
|
1.0
|
CG
|
C:ASN936
|
3.5
|
35.4
|
1.0
|
C
|
C:ALA933
|
3.5
|
37.9
|
1.0
|
C
|
C:GLY931
|
3.6
|
37.3
|
1.0
|
C
|
C:GLY916
|
3.6
|
39.3
|
1.0
|
OD1
|
C:ASP918
|
3.8
|
33.9
|
1.0
|
ND2
|
C:ASN936
|
3.9
|
35.4
|
1.0
|
CB
|
C:ASP918
|
3.9
|
33.9
|
1.0
|
N
|
C:ALA933
|
4.0
|
37.9
|
1.0
|
N
|
C:ASP918
|
4.1
|
33.9
|
1.0
|
N
|
C:GLY916
|
4.1
|
39.3
|
1.0
|
C
|
C:GLY932
|
4.1
|
38.9
|
1.0
|
C
|
C:ASP915
|
4.2
|
43.7
|
1.0
|
C
|
C:GLY913
|
4.2
|
38.2
|
1.0
|
O
|
C:GLY913
|
4.3
|
38.2
|
1.0
|
O
|
C:ASP915
|
4.3
|
43.7
|
1.0
|
CA
|
C:ALA933
|
4.4
|
37.9
|
1.0
|
CA
|
C:GLY931
|
4.4
|
37.3
|
1.0
|
N
|
C:GLY934
|
4.4
|
39.7
|
1.0
|
CA
|
C:GLY913
|
4.4
|
38.2
|
1.0
|
CA
|
C:GLY916
|
4.5
|
39.3
|
1.0
|
CA
|
C:GLY932
|
4.5
|
38.9
|
1.0
|
N
|
C:ASP915
|
4.5
|
43.7
|
1.0
|
C
|
C:GLY914
|
4.5
|
42.0
|
1.0
|
N
|
C:GLY932
|
4.5
|
38.9
|
1.0
|
CA
|
C:GLY934
|
4.5
|
39.7
|
1.0
|
O
|
C:GLY934
|
4.5
|
39.7
|
1.0
|
N
|
C:ASP917
|
4.5
|
41.2
|
1.0
|
O
|
C:GLY932
|
4.5
|
38.9
|
1.0
|
O
|
C:GLY914
|
4.6
|
42.0
|
1.0
|
N
|
C:GLY914
|
4.6
|
42.0
|
1.0
|
CA
|
C:CA1801
|
4.6
|
27.6
|
1.0
|
CA
|
C:ASP917
|
4.6
|
41.2
|
1.0
|
C
|
C:GLY934
|
4.7
|
39.7
|
1.0
|
CA
|
C:ASP918
|
4.7
|
33.9
|
1.0
|
CB
|
C:ASN936
|
4.7
|
35.4
|
1.0
|
C
|
C:ASP917
|
4.7
|
41.2
|
1.0
|
CA
|
C:ASP915
|
4.8
|
43.7
|
1.0
|
|
Calcium binding site 7 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 7 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1803
b:26.4
occ:1.00
|
O
|
C:GLY1018
|
2.4
|
28.4
|
1.0
|
O
|
C:GLY1016
|
2.4
|
29.4
|
1.0
|
OD1
|
C:ASP1038
|
2.4
|
30.0
|
1.0
|
O
|
C:GLY1033
|
2.4
|
26.1
|
1.0
|
OD2
|
C:ASP1020
|
2.5
|
27.2
|
1.0
|
O
|
C:SER1035
|
2.6
|
31.0
|
1.0
|
OD2
|
C:ASP1038
|
3.0
|
30.0
|
1.0
|
CG
|
C:ASP1038
|
3.1
|
30.0
|
1.0
|
CG
|
C:ASP1020
|
3.4
|
27.2
|
1.0
|
C
|
C:GLY1016
|
3.4
|
29.4
|
1.0
|
C
|
C:GLY1018
|
3.5
|
28.4
|
1.0
|
C
|
C:GLY1033
|
3.6
|
26.1
|
1.0
|
N
|
C:GLY1018
|
3.7
|
28.4
|
1.0
|
C
|
C:SER1035
|
3.7
|
31.0
|
1.0
|
C
|
C:ALA1017
|
3.9
|
28.7
|
1.0
|
OD1
|
C:ASP1020
|
4.0
|
27.2
|
1.0
|
N
|
C:GLY1016
|
4.1
|
29.4
|
1.0
|
C
|
C:GLY1034
|
4.1
|
31.2
|
1.0
|
N
|
C:ALA1017
|
4.2
|
28.7
|
1.0
|
CA
|
C:GLY1018
|
4.2
|
28.4
|
1.0
|
CA
|
C:ALA1017
|
4.2
|
28.7
|
1.0
|
N
|
C:SER1035
|
4.3
|
31.0
|
1.0
|
N
|
C:ASP1020
|
4.3
|
27.2
|
1.0
|
CB
|
C:ASP1020
|
4.3
|
27.2
|
1.0
|
CA
|
C:GLY1016
|
4.3
|
29.4
|
1.0
|
O
|
C:GLY1034
|
4.3
|
31.2
|
1.0
|
CA
|
C:GLY1036
|
4.4
|
29.6
|
1.0
|
N
|
C:GLY1036
|
4.5
|
29.6
|
1.0
|
CA
|
C:GLY1034
|
4.5
|
31.2
|
1.0
|
CA
|
C:GLY1033
|
4.5
|
26.1
|
1.0
|
C
|
C:GLY1015
|
4.5
|
24.1
|
1.0
|
N
|
C:ASN1019
|
4.5
|
29.2
|
1.0
|
N
|
C:GLY1034
|
4.5
|
31.2
|
1.0
|
CB
|
C:ASP1038
|
4.5
|
30.0
|
1.0
|
O
|
C:ALA1017
|
4.6
|
28.7
|
1.0
|
CA
|
C:SER1035
|
4.6
|
31.0
|
1.0
|
CA
|
C:ASN1019
|
4.8
|
29.2
|
1.0
|
C
|
C:GLY1036
|
4.9
|
29.6
|
1.0
|
O
|
C:GLY1015
|
4.9
|
24.1
|
1.0
|
CA
|
C:GLY1015
|
4.9
|
24.1
|
1.0
|
CA
|
C:ASP1020
|
5.0
|
27.2
|
1.0
|
C
|
C:ASN1019
|
5.0
|
29.2
|
1.0
|
CA
|
C:CA1805
|
5.0
|
39.6
|
1.0
|
|
Calcium binding site 8 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 8 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1804
b:33.3
occ:1.00
|
OD1
|
C:ASN1029
|
2.3
|
34.4
|
1.0
|
OD1
|
C:ASP1047
|
2.3
|
37.6
|
1.0
|
O
|
C:ALA1044
|
2.4
|
32.3
|
1.0
|
O
|
C:GLY1042
|
2.4
|
32.0
|
1.0
|
O
|
C:ASN1025
|
2.4
|
35.2
|
1.0
|
O
|
C:HIS1027
|
2.8
|
41.1
|
1.0
|
CG
|
C:ASP1047
|
2.8
|
37.6
|
1.0
|
OD2
|
C:ASP1047
|
2.8
|
37.6
|
1.0
|
C
|
C:GLY1042
|
3.4
|
32.0
|
1.0
|
CG
|
C:ASN1029
|
3.5
|
34.4
|
1.0
|
C
|
C:ALA1044
|
3.6
|
32.3
|
1.0
|
C
|
C:ASN1025
|
3.7
|
35.2
|
1.0
|
C
|
C:GLY1043
|
3.9
|
31.3
|
1.0
|
C
|
C:HIS1027
|
4.0
|
41.1
|
1.0
|
N
|
C:ASN1025
|
4.0
|
35.2
|
1.0
|
N
|
C:ALA1044
|
4.0
|
32.3
|
1.0
|
O
|
C:GLY1043
|
4.1
|
31.3
|
1.0
|
CB
|
C:ASP1047
|
4.1
|
37.6
|
1.0
|
CA
|
C:GLY1042
|
4.2
|
32.0
|
1.0
|
CA
|
C:GLY1043
|
4.3
|
31.3
|
1.0
|
N
|
C:GLY1043
|
4.3
|
31.3
|
1.0
|
ND2
|
C:ASN1029
|
4.4
|
34.4
|
1.0
|
N
|
C:HIS1027
|
4.4
|
41.1
|
1.0
|
CB
|
C:ASN1029
|
4.4
|
34.4
|
1.0
|
N
|
C:ASN1029
|
4.5
|
34.4
|
1.0
|
CA
|
C:ALA1044
|
4.5
|
32.3
|
1.0
|
C
|
C:ALA1026
|
4.5
|
34.5
|
1.0
|
N
|
C:GLY1045
|
4.5
|
40.5
|
1.0
|
CA
|
C:ASN1025
|
4.5
|
35.2
|
1.0
|
CA
|
C:GLY1045
|
4.6
|
40.5
|
1.0
|
N
|
C:ALA1026
|
4.6
|
34.5
|
1.0
|
O
|
C:GLY1045
|
4.6
|
40.5
|
1.0
|
CA
|
C:ALA1026
|
4.7
|
34.5
|
1.0
|
C
|
C:GLY1045
|
4.7
|
40.5
|
1.0
|
CA
|
C:CA1806
|
4.7
|
33.7
|
1.0
|
C
|
C:GLY1024
|
4.8
|
29.6
|
1.0
|
CA
|
C:ASP1028
|
4.8
|
39.2
|
1.0
|
N
|
C:ASP1028
|
4.9
|
39.2
|
1.0
|
CA
|
C:HIS1027
|
4.9
|
41.1
|
1.0
|
O
|
C:ALA1026
|
4.9
|
34.5
|
1.0
|
CA
|
C:GLY1024
|
4.9
|
29.6
|
1.0
|
|
Calcium binding site 9 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 9 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1805
b:39.6
occ:1.00
|
O
|
C:GLY1034
|
2.3
|
31.2
|
1.0
|
OD1
|
C:ASN1056
|
2.4
|
49.3
|
1.0
|
OD2
|
C:ASP1038
|
2.4
|
30.0
|
1.0
|
O
|
C:GLU1053
|
2.4
|
36.5
|
1.0
|
O
|
C:GLY1036
|
2.5
|
29.6
|
1.0
|
O
|
C:GLY1051
|
2.5
|
31.3
|
1.0
|
CG
|
C:ASN1056
|
3.4
|
49.3
|
1.0
|
CG
|
C:ASP1038
|
3.4
|
30.0
|
1.0
|
C
|
C:GLY1034
|
3.5
|
31.2
|
1.0
|
C
|
C:GLY1036
|
3.6
|
29.6
|
1.0
|
C
|
C:GLU1053
|
3.6
|
36.5
|
1.0
|
C
|
C:GLY1051
|
3.7
|
31.3
|
1.0
|
ND2
|
C:ASN1056
|
3.8
|
49.3
|
1.0
|
N
|
C:GLY1036
|
3.9
|
29.6
|
1.0
|
N
|
C:GLU1053
|
3.9
|
36.5
|
1.0
|
C
|
C:GLY1052
|
3.9
|
33.4
|
1.0
|
CB
|
C:ASP1038
|
4.0
|
30.0
|
1.0
|
N
|
C:ASP1038
|
4.0
|
30.0
|
1.0
|
C
|
C:SER1035
|
4.0
|
31.0
|
1.0
|
CA
|
C:GLY1052
|
4.2
|
33.4
|
1.0
|
C
|
C:GLY1033
|
4.2
|
26.1
|
1.0
|
N
|
C:GLY1034
|
4.3
|
31.2
|
1.0
|
CA
|
C:GLY1036
|
4.3
|
29.6
|
1.0
|
CA
|
C:SER1035
|
4.3
|
31.0
|
1.0
|
O
|
C:GLY1052
|
4.3
|
33.4
|
1.0
|
CA
|
C:GLU1053
|
4.4
|
36.5
|
1.0
|
N
|
C:SER1035
|
4.4
|
31.0
|
1.0
|
N
|
C:GLY1052
|
4.4
|
33.4
|
1.0
|
O
|
C:GLY1033
|
4.4
|
26.1
|
1.0
|
OD1
|
C:ASP1038
|
4.5
|
30.0
|
1.0
|
CA
|
C:GLY1034
|
4.5
|
31.2
|
1.0
|
O
|
C:SER1035
|
4.5
|
31.0
|
1.0
|
N
|
C:GLY1054
|
4.6
|
32.1
|
1.0
|
N
|
C:ASP1037
|
4.6
|
32.2
|
1.0
|
CA
|
C:GLY1033
|
4.6
|
26.1
|
1.0
|
CA
|
C:ASP1038
|
4.6
|
30.0
|
1.0
|
CB
|
C:ASN1056
|
4.7
|
49.3
|
1.0
|
CA
|
C:GLY1054
|
4.7
|
32.1
|
1.0
|
CA
|
C:GLY1051
|
4.8
|
31.3
|
1.0
|
CA
|
C:ASP1037
|
4.9
|
32.2
|
1.0
|
C
|
C:ASP1037
|
5.0
|
32.2
|
1.0
|
CA
|
C:CA1803
|
5.0
|
26.4
|
1.0
|
|
Calcium binding site 10 out
of 33 in 7usl
Go back to
Calcium Binding Sites List in 7usl
Calcium binding site 10 out
of 33 in the Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Integrin Alpham/BETA2 Ectodomain in Complex with Adenylate Cyclase Toxin RTX751 and M1F5 Fab within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1806
b:33.7
occ:1.00
|
O
|
C:ALA1062
|
2.3
|
49.3
|
1.0
|
OD2
|
C:ASP1047
|
2.4
|
37.6
|
1.0
|
OD1
|
C:ASP1065
|
2.4
|
49.3
|
1.0
|
O
|
C:GLY1043
|
2.5
|
31.3
|
1.0
|
O
|
C:GLY1060
|
2.5
|
49.3
|
1.0
|
O
|
C:GLY1045
|
2.6
|
40.5
|
1.0
|
CG
|
C:ASP1065
|
3.3
|
49.3
|
1.0
|
CG
|
C:ASP1047
|
3.5
|
37.6
|
1.0
|
OD2
|
C:ASP1065
|
3.5
|
49.3
|
1.0
|
C
|
C:ALA1062
|
3.5
|
49.3
|
1.0
|
C
|
C:GLY1060
|
3.5
|
49.3
|
1.0
|
C
|
C:GLY1043
|
3.7
|
31.3
|
1.0
|
C
|
C:GLY1061
|
3.7
|
49.3
|
1.0
|
C
|
C:GLY1045
|
3.8
|
40.5
|
1.0
|
O
|
C:GLY1061
|
3.8
|
49.3
|
1.0
|
C
|
C:ALA1044
|
3.8
|
32.3
|
1.0
|
N
|
C:ALA1062
|
3.9
|
49.3
|
1.0
|
O
|
C:ALA1044
|
4.0
|
32.3
|
1.0
|
CA
|
C:GLY1061
|
4.1
|
49.3
|
1.0
|
N
|
C:GLY1045
|
4.1
|
40.5
|
1.0
|
CA
|
C:ALA1044
|
4.1
|
32.3
|
1.0
|
CB
|
C:ASP1047
|
4.2
|
37.6
|
1.0
|
N
|
C:GLY1061
|
4.2
|
49.3
|
1.0
|
OD1
|
C:ASP1047
|
4.3
|
37.6
|
1.0
|
CA
|
C:ALA1062
|
4.4
|
49.3
|
1.0
|
N
|
C:ALA1044
|
4.4
|
32.3
|
1.0
|
N
|
C:ASP1047
|
4.4
|
37.6
|
1.0
|
N
|
C:GLY1063
|
4.5
|
49.3
|
1.0
|
CA
|
C:GLY1045
|
4.5
|
40.5
|
1.0
|
CA
|
C:GLY1060
|
4.6
|
49.3
|
1.0
|
CA
|
C:GLY1063
|
4.6
|
49.3
|
1.0
|
N
|
C:GLY1043
|
4.6
|
31.3
|
1.0
|
C
|
C:GLY1042
|
4.6
|
32.0
|
1.0
|
CB
|
C:ASP1065
|
4.7
|
49.3
|
1.0
|
CA
|
C:CA1804
|
4.7
|
33.3
|
1.0
|
CA
|
C:GLY1043
|
4.8
|
31.3
|
1.0
|
N
|
C:ASN1046
|
4.8
|
40.8
|
1.0
|
C
|
C:GLY1063
|
4.9
|
49.3
|
1.0
|
O
|
C:GLY1042
|
4.9
|
32.0
|
1.0
|
CA
|
C:CA1807
|
4.9
|
41.4
|
1.0
|
CA
|
C:GLY1042
|
5.0
|
32.0
|
1.0
|
CA
|
C:ASP1047
|
5.0
|
37.6
|
1.0
|
|
Reference:
J.A.Goldsmith,
A.M.Divenere,
J.A.Maynard,
J.S.Mclellan.
Structural Basis For Non-Canonical Integrin Engagement By Bordetella Adenylate Cyclase Toxin. Cell Rep V. 40 11196 2022.
ISSN: ESSN 2211-1247
PubMed: 35977491
DOI: 10.1016/J.CELREP.2022.111196
Page generated: Fri Jul 19 05:05:21 2024
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