Calcium in PDB 7usm: Integrin Alpham/BETA2 Ectodomain

The binding sites of Calcium atom in the Integrin Alpham/BETA2 Ectodomain (pdb code 7usm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Integrin Alpham/BETA2 Ectodomain, PDB code: 7usm:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Integrin Alpham/BETA2 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Integrin Alpham/BETA2 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1201 b:51.6 occ:1.00 OD1 A:ASP584 2.4 46.8 1.0 OD1 A:ASP580 2.4 57.3 1.0 OD1 A:ASP576 2.5 50.2 1.0 OD2 A:ASP584 2.6 46.8 1.0 OD2 A:ASP580 2.8 57.3 1.0 CG A:ASP584 2.8 46.8 1.0 O A:LEU582 2.9 51.5 1.0 CG A:ASP580 2.9 57.3 1.0 CB A:THR578 3.0 52.7 1.0 CG A:ASP576 3.5 50.2 1.0 OG1 A:THR578 3.6 52.7 1.0 N A:THR578 3.6 52.7 1.0 CA A:THR578 3.8 52.7 1.0 CG2 A:THR578 3.8 52.7 1.0 C A:LEU582 3.9 51.5 1.0 OD2 A:ASP576 4.1 50.2 1.0 N A:LEU582 4.2 51.5 1.0 CB A:LEU582 4.2 51.5 1.0 C A:THR578 4.3 52.7 1.0 CB A:ASP580 4.3 57.3 1.0 CA A:LEU582 4.3 51.5 1.0 CB A:ASP584 4.3 46.8 1.0 N A:ASP580 4.4 57.3 1.0 N A:MET579 4.4 56.8 1.0 N A:LEU577 4.5 48.5 1.0 CB A:ASP576 4.7 50.2 1.0 CA A:ASP576 4.8 50.2 1.0 CB A:ARG597 4.8 47.6 1.0 C A:LEU577 4.8 48.5 1.0 O A:VAL583 4.8 46.6 1.0 C A:VAL583 4.8 46.6 1.0 CA A:ASP580 4.9 57.3 1.0 CG A:ARG597 4.9 47.6 1.0 N A:ASP584 4.9 46.8 1.0 N A:VAL583 5.0 46.6 1.0

Calcium binding site 2 out of 4 in the Integrin Alpham/BETA2 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Integrin Alpham/BETA2 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1202 b:43.3 occ:1.00 OD1 A:ASP517 2.3 48.9 1.0 OD1 A:ASP521 2.3 43.3 1.0 OD1 A:ASN515 2.4 47.5 1.0 O A:LEU519 2.4 48.1 1.0 OD2 A:ASP521 2.6 43.3 1.0 CG A:ASP521 2.8 43.3 1.0 OD1 A:ASP513 3.2 47.0 1.0 CG A:ASP517 3.3 48.9 1.0 C A:LEU519 3.5 48.1 1.0 CG A:ASN515 3.5 47.5 1.0 OD2 A:ASP517 3.7 48.9 1.0 CB A:LEU519 4.0 48.1 1.0 ND2 A:ASN515 4.1 47.5 1.0 CA A:LEU519 4.1 48.1 1.0 N A:LEU519 4.1 48.1 1.0 CG A:ASP513 4.2 47.0 1.0 CB A:ASP521 4.3 43.3 1.0 N A:VAL514 4.4 45.4 1.0 CA A:ASP513 4.4 47.0 1.0 N A:ASN515 4.5 47.5 1.0 ND1 A:HIS540 4.6 43.7 1.0 N A:THR520 4.6 46.2 1.0 C A:THR520 4.6 46.2 1.0 CB A:ASP517 4.6 48.9 1.0 N A:ASP521 4.6 43.3 1.0 O A:GLY541 4.7 49.1 1.0 N A:ASP517 4.7 48.9 1.0 CB A:ASP513 4.7 47.0 1.0 CB A:ASN515 4.8 47.5 1.0 N A:GLY541 4.8 49.1 1.0 O A:THR520 4.9 46.2 1.0 C A:ASP513 4.9 47.0 1.0 CA A:ASP521 4.9 43.3 1.0 CB A:HIS540 4.9 43.7 1.0 CA A:THR520 5.0 46.2 1.0

Calcium binding site 3 out of 4 in the Integrin Alpham/BETA2 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Integrin Alpham/BETA2 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1203 b:58.4 occ:1.00 OD1 A:ASN453 2.4 54.9 1.0 OD1 A:ASP457 2.5 51.9 1.0 OD1 A:ASP451 2.5 54.4 1.0 O A:SER455 2.5 54.2 1.0 ND2 A:ASN453 2.8 54.9 1.0 OD2 A:ASP451 2.8 54.4 1.0 CG A:ASN453 2.9 54.9 1.0 CG A:ASP451 3.0 54.4 1.0 OD2 A:ASP457 3.0 51.9 1.0 CG A:ASP457 3.1 51.9 1.0 C A:SER455 3.5 54.2 1.0 OD1 A:ASP449 3.5 51.0 1.0 CB A:SER455 3.9 54.2 1.0 CA A:SER455 4.0 54.2 1.0 N A:SER455 4.1 54.2 1.0 O A:THR456 4.2 53.1 1.0 CB A:ASN453 4.3 54.9 1.0 C A:THR456 4.4 53.1 1.0 CB A:ASP457 4.5 51.9 1.0 CG A:ASP449 4.5 51.0 1.0 N A:THR456 4.5 53.1 1.0 CB A:ASP451 4.5 54.4 1.0 N A:ASP457 4.7 51.9 1.0 N A:ASN453 4.7 54.9 1.0 CA A:THR456 4.9 53.1 1.0 CA A:ASP457 4.9 51.9 1.0 OD2 A:ASP449 4.9 51.0 1.0 N A:ASP451 4.9 54.4 1.0 CA A:ASN453 5.0 54.9 1.0

Calcium binding site 4 out of 4 in the Integrin Alpham/BETA2 Ectodomain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Integrin Alpham/BETA2 Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:45.6 occ:1.00 O B:GLU325 2.6 49.5 1.0 OD1 B:ASP119 2.7 50.9 1.0 O B:SER116 2.7 50.7 1.0 OD1 B:ASP120 2.8 49.7 1.0 OD2 B:ASP119 3.2 50.9 1.0 CG B:ASP119 3.3 50.9 1.0 C B:GLU325 3.8 49.5 1.0 C B:SER116 3.9 50.7 1.0 CG B:ASP120 3.9 49.7 1.0 OE1 B:GLU325 4.4 49.5 1.0 OD2 B:ASP120 4.4 49.7 1.0 CA B:GLU325 4.6 49.5 1.0 CA B:MET117 4.7 49.5 1.0 N B:MET117 4.7 49.5 1.0 CB B:GLU325 4.8 49.5 1.0 CB B:ASP119 4.8 50.9 1.0 OD2 B:ASP242 4.8 44.3 1.0 N B:ASP326 4.8 49.5 1.0 N B:ASP120 4.8 49.7 1.0 CA B:SER116 4.9 50.7 1.0 CA B:ASP326 4.9 49.5 1.0

J.A.Goldsmith, A.M.Divenere, J.A.Maynard, J.S.Mclellan. Structural Basis For Non-Canonical Integrin Engagement By Bordetella Adenylate Cyclase Toxin. Cell Rep V. 40 11196 2022.
ISSN: ESSN 2211-1247
PubMed: 35977491
DOI: 10.1016/J.CELREP.2022.111196