Calcium in PDB 7usw: Structure of Expanded C. Elegans Tmc-1 Complex

The binding sites of Calcium atom in the Structure of Expanded C. Elegans Tmc-1 Complex (pdb code 7usw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of Expanded C. Elegans Tmc-1 Complex, PDB code: 7usw:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:44.9 occ:1.00 OD2 A:ASP683 3.3 37.6 1.0 OG1 A:THR687 3.4 23.3 1.0 CD2 A:LEU760 3.9 38.8 1.0 OD1 A:ASP683 4.0 33.1 1.0 CG A:ASP683 4.0 29.2 1.0 CB A:HIS731 4.0 17.0 1.0 CB A:THR687 4.3 18.6 1.0 CE A:LYS756 4.4 28.9 1.0 O A:HIS731 4.4 27.9 1.0 CG2 A:THR687 4.4 18.1 1.0 NZ A:LYS756 4.5 30.6 1.0 C A:HIS731 4.6 17.1 1.0 CG A:HIS731 4.6 24.5 1.0 CD1 A:LEU760 4.6 42.0 1.0 CA A:HIS731 4.8 9.7 1.0 CB A:ASN735 4.9 25.0 1.0 CG A:LEU760 4.9 39.9 1.0 NE2 A:HIS404 5.0 20.6 1.0 O A:ASP683 5.0 21.3 1.0

Calcium binding site 2 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:45.7 occ:1.00 OD2 A:ASP695 2.5 46.9 1.0 NH1 A:ARG764 3.4 30.7 1.0 ND2 A:ASN772 3.4 33.4 1.0 CG A:ASP695 3.6 42.2 1.0 CD1 A:PHE723 3.8 30.4 1.0 CE1 A:PHE723 3.9 17.4 1.0 OD1 A:ASP695 4.0 37.2 1.0 CB A:ALA767 4.2 12.2 1.0 CG A:ASN772 4.3 30.4 1.0 OD1 A:ASN772 4.4 25.4 1.0 CD A:ARG764 4.5 22.3 1.0 CZ A:ARG764 4.6 27.9 1.0 ND2 A:ASN728 4.8 21.0 1.0 N A:VAL768 4.8 31.0 1.0 CB A:ASP695 4.9 31.9 1.0 C A:ALA767 4.9 19.5 1.0 NE A:ARG764 5.0 21.4 1.0 CG1 A:ILE691 5.0 25.7 1.0 CG A:PHE723 5.0 22.6 1.0

Calcium binding site 3 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1302 b:44.7 occ:1.00 OD2 B:ASP683 3.3 38.0 1.0 OG1 B:THR687 3.4 21.8 1.0 CD2 B:LEU760 3.9 36.9 1.0 OD1 B:ASP683 4.0 30.9 1.0 CB B:HIS731 4.0 16.1 1.0 CG B:ASP683 4.0 28.2 1.0 CB B:THR687 4.3 18.2 1.0 O B:HIS731 4.4 27.6 1.0 CE B:LYS756 4.4 26.9 1.0 CG2 B:THR687 4.4 18.1 1.0 NZ B:LYS756 4.5 29.1 1.0 C B:HIS731 4.6 17.6 1.0 CG B:HIS731 4.6 23.7 1.0 CD1 B:LEU760 4.6 40.3 1.0 CA B:HIS731 4.8 11.3 1.0 CB B:ASN735 4.9 23.8 1.0 CG B:LEU760 4.9 37.9 1.0 NE2 B:HIS404 4.9 20.0 1.0 O B:ASP683 5.0 19.4 1.0

Calcium binding site 4 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1303 b:46.1 occ:1.00 OD2 B:ASP695 2.5 46.2 1.0 NH1 B:ARG764 3.4 28.8 1.0 ND2 B:ASN772 3.4 32.4 1.0 CG B:ASP695 3.6 41.7 1.0 CD1 B:PHE723 3.8 29.7 1.0 CE1 B:PHE723 3.9 17.5 1.0 OD1 B:ASP695 4.0 37.1 1.0 CB B:ALA767 4.2 11.5 1.0 CG B:ASN772 4.3 29.8 1.0 OD1 B:ASN772 4.4 23.7 1.0 CD B:ARG764 4.5 20.9 1.0 CZ B:ARG764 4.6 26.3 1.0 ND2 B:ASN728 4.8 22.3 1.0 N B:VAL768 4.8 30.5 1.0 CB B:ASP695 4.9 31.1 1.0 C B:ALA767 4.9 17.7 1.0 NE B:ARG764 5.0 20.2 1.0 CG1 B:ILE691 5.0 25.4 1.0

Calcium binding site 5 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:62.5 occ:1.00 O C:LEU136 2.3 43.1 1.0 OD2 C:ASP141 2.3 60.8 1.0 OD1 C:ASP134 2.4 64.4 1.0 OD1 C:ASP132 2.4 64.6 1.0 OD2 C:ASP132 2.5 67.0 1.0 CG C:ASP132 2.8 64.1 1.0 CG C:ASP134 3.4 59.5 1.0 CG C:ASP141 3.4 62.4 1.0 C C:LEU136 3.5 46.9 1.0 OD2 C:ASP134 3.7 56.5 1.0 N C:GLY138 4.0 51.2 1.0 OD1 C:ASP141 4.1 67.2 1.0 CB C:ASP132 4.3 65.8 1.0 CA C:LEU136 4.3 43.9 1.0 N C:LEU136 4.4 43.7 1.0 N C:LEU137 4.4 51.5 1.0 CB C:LEU136 4.5 51.7 1.0 CB C:ASP141 4.5 55.3 1.0 CA C:LEU137 4.5 47.6 1.0 CB C:ASP130 4.6 41.2 1.0 N C:ASP134 4.7 57.0 1.0 CB C:ASP134 4.7 55.5 1.0 C C:LEU137 4.8 46.8 1.0 N C:ASP132 4.8 70.5 1.0 CA C:GLY138 4.9 51.6 1.0 N C:GLY133 4.9 57.9 1.0

Calcium binding site 6 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:77.4 occ:1.00 OD1 C:ASP171 2.4 79.9 1.0 O C:SER177 2.4 62.7 1.0 CG C:ASP171 3.4 75.7 1.0 OD1 C:ASN179 3.6 57.6 1.0 C C:SER177 3.6 58.1 1.0 OD2 C:ASP171 4.0 75.3 1.0 CB C:ASP175 4.0 75.3 1.0 CA C:ILE178 4.2 52.9 1.0 N C:ASP173 4.3 74.7 1.0 CB C:ASP173 4.3 79.1 1.0 N C:ILE178 4.3 51.3 1.0 N C:ASN179 4.3 58.5 1.0 N C:LEU172 4.4 74.8 1.0 N C:ASP175 4.4 72.8 1.0 CB C:ASP171 4.5 69.4 1.0 CG C:ASN179 4.5 57.5 1.0 CA C:ASP171 4.5 72.3 1.0 N C:SER177 4.6 62.6 1.0 CG C:ASP173 4.6 78.1 1.0 CA C:SER177 4.7 59.5 1.0 C C:ILE178 4.7 50.4 1.0 CA C:ASP173 4.7 77.5 1.0 CA C:ASP175 4.8 74.9 1.0 OD2 C:ASP173 4.8 75.3 1.0 N C:GLY174 4.9 65.7 1.0 C C:ASP171 5.0 74.5 1.0

Calcium binding site 7 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca301 b:60.2 occ:1.00 O E:LEU136 2.3 43.6 1.0 OD2 E:ASP141 2.3 61.9 1.0 OD1 E:ASP134 2.4 63.8 1.0 OD1 E:ASP132 2.5 64.2 1.0 OD2 E:ASP132 2.5 65.2 1.0 CG E:ASP132 2.8 63.0 1.0 CG E:ASP134 3.4 59.5 1.0 CG E:ASP141 3.4 63.4 1.0 C E:LEU136 3.5 47.4 1.0 OD2 E:ASP134 3.7 55.6 1.0 N E:GLY138 4.0 51.5 1.0 OD1 E:ASP141 4.1 68.0 1.0 CB E:ASP132 4.3 64.6 1.0 CA E:LEU136 4.3 43.9 1.0 N E:LEU136 4.4 43.8 1.0 N E:LEU137 4.4 52.0 1.0 CB E:LEU136 4.5 51.7 1.0 CB E:ASP141 4.5 55.5 1.0 CA E:LEU137 4.5 48.3 1.0 CB E:ASP130 4.6 40.1 1.0 N E:ASP134 4.7 56.5 1.0 CB E:ASP134 4.7 55.1 1.0 C E:LEU137 4.8 47.2 1.0 N E:ASP132 4.8 69.5 1.0 CA E:GLY138 4.8 52.5 1.0 N E:GLY133 4.9 57.8 1.0

Calcium binding site 8 out of 8 in the Structure of Expanded C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Expanded C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca302 b:77.8 occ:1.00 OD1 E:ASP171 2.4 81.0 1.0 O E:SER177 2.4 63.7 1.0 CG E:ASP171 3.4 76.8 1.0 OD1 E:ASN179 3.6 58.7 1.0 C E:SER177 3.6 59.5 1.0 OD2 E:ASP171 4.0 76.5 1.0 CB E:ASP175 4.0 73.5 1.0 CA E:ILE178 4.2 54.4 1.0 N E:ASP173 4.2 72.8 1.0 CB E:ASP173 4.3 77.1 1.0 N E:ILE178 4.3 53.0 1.0 N E:ASN179 4.3 59.6 1.0 N E:LEU172 4.4 73.9 1.0 N E:ASP175 4.4 72.3 1.0 CB E:ASP171 4.5 70.2 1.0 CG E:ASN179 4.5 58.4 1.0 CA E:ASP171 4.5 73.3 1.0 N E:SER177 4.6 63.7 1.0 CG E:ASP173 4.6 76.4 1.0 CA E:SER177 4.7 60.7 1.0 C E:ILE178 4.7 52.0 1.0 CA E:ASP173 4.7 76.1 1.0 CA E:ASP175 4.8 73.7 1.0 OD2 E:ASP173 4.8 73.5 1.0 N E:GLY174 4.9 63.9 1.0 C E:ASP171 5.0 75.5 1.0

H.Jeong, S.Clark, A.Goehring, S.Dehghani-Ghahnaviyeh, A.Rasouli, E.Tajkhorshid, E.Gouaux. Structures of the Tmc-1 Complex Illuminate Mechanosensory Transduction. Nature V. 610 796 2022.
ISSN: ESSN 1476-4687
PubMed: 36224384
DOI: 10.1038/S41586-022-05314-8