Calcium in PDB 7usx: Structure of Contracted C. Elegans Tmc-1 Complex

The binding sites of Calcium atom in the Structure of Contracted C. Elegans Tmc-1 Complex (pdb code 7usx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of Contracted C. Elegans Tmc-1 Complex, PDB code: 7usx:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:17.9 occ:1.00 OD2 A:ASP683 3.4 22.8 1.0 OG1 A:THR687 3.4 13.5 1.0 CD2 A:LEU760 3.8 30.1 1.0 OD1 A:ASP683 3.9 22.1 1.0 CG A:ASP683 4.0 16.8 1.0 CB A:HIS731 4.1 11.8 1.0 CB A:THR687 4.3 5.2 1.0 CG2 A:THR687 4.3 8.9 1.0 CE A:LYS756 4.3 18.6 1.0 CD1 A:LEU760 4.3 30.8 1.0 NZ A:LYS756 4.4 23.7 1.0 O A:HIS731 4.5 15.5 1.0 C A:HIS731 4.6 6.0 1.0 CG A:LEU760 4.7 26.9 1.0 CG A:HIS731 4.7 15.9 1.0 CB A:ASN735 4.9 21.4 1.0 CA A:HIS731 4.9 3.4 1.0 O A:ASP683 4.9 8.7 1.0 NE2 A:HIS404 5.0 7.1 1.0

Calcium binding site 2 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:27.1 occ:1.00 OD2 A:ASP695 3.1 23.3 1.0 CE1 A:PHE723 3.4 19.3 1.0 CD1 A:PHE723 3.5 29.8 1.0 ND2 A:ASN772 3.5 23.9 1.0 NH1 A:ARG764 3.6 26.3 1.0 CB A:ALA767 4.0 20.4 1.0 CG A:ASP695 4.1 23.6 1.0 CD A:ARG764 4.1 22.0 1.0 N A:VAL768 4.4 17.1 1.0 O A:ARG764 4.5 26.7 1.0 CG A:ASN772 4.6 22.9 1.0 OD1 A:ASP695 4.6 22.3 1.0 CZ A:ARG764 4.6 28.4 1.0 CZ A:PHE723 4.7 20.9 1.0 C A:ALA767 4.7 12.0 1.0 CB A:VAL768 4.7 6.8 1.0 CA A:VAL768 4.7 5.4 1.0 CG A:PHE723 4.8 25.5 1.0 ND2 A:ASN728 4.8 14.9 1.0 NE A:ARG764 4.8 23.8 1.0 OD1 A:ASN772 4.9 22.6 1.0 CA A:ALA767 5.0 10.5 1.0

Calcium binding site 3 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1301 b:18.7 occ:1.00 OD2 B:ASP683 3.4 22.1 1.0 OG1 B:THR687 3.4 11.2 1.0 CD2 B:LEU760 3.8 30.5 1.0 OD1 B:ASP683 3.9 21.9 1.0 CG B:ASP683 4.0 16.3 1.0 CB B:HIS731 4.1 13.6 1.0 CB B:THR687 4.3 5.2 1.0 CG2 B:THR687 4.3 9.4 1.0 CE B:LYS756 4.3 18.6 1.0 CD1 B:LEU760 4.3 30.5 1.0 NZ B:LYS756 4.4 23.2 1.0 O B:HIS731 4.5 17.8 1.0 C B:HIS731 4.6 7.9 1.0 CG B:LEU760 4.7 26.6 1.0 CG B:HIS731 4.8 17.4 1.0 CB B:ASN735 4.9 22.2 1.0 O B:ASP683 4.9 7.9 1.0 CA B:HIS731 4.9 5.4 1.0 NE2 B:HIS404 5.0 6.2 1.0

Calcium binding site 4 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1302 b:27.8 occ:1.00 OD2 B:ASP695 3.0 24.2 1.0 CE1 B:PHE723 3.4 19.3 1.0 CD1 B:PHE723 3.5 29.8 1.0 ND2 B:ASN772 3.5 23.9 1.0 NH1 B:ARG764 3.6 26.9 1.0 CB B:ALA767 4.0 20.9 1.0 CG B:ASP695 4.1 24.1 1.0 CD B:ARG764 4.1 22.7 1.0 N B:VAL768 4.4 16.6 1.0 O B:ARG764 4.5 27.5 1.0 CG B:ASN772 4.6 22.6 1.0 OD1 B:ASP695 4.6 22.8 1.0 CZ B:ARG764 4.6 29.4 1.0 CZ B:PHE723 4.7 20.9 1.0 C B:ALA767 4.7 12.0 1.0 CB B:VAL768 4.7 6.5 1.0 CA B:VAL768 4.7 5.5 1.0 CG B:PHE723 4.8 25.1 1.0 ND2 B:ASN728 4.8 15.1 1.0 NE B:ARG764 4.8 24.8 1.0 OD1 B:ASN772 4.9 22.1 1.0 CA B:ALA767 5.0 11.3 1.0

Calcium binding site 5 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:85.0 occ:1.00 O C:LEU136 2.4 72.0 1.0 OD2 C:ASP132 2.5 72.9 1.0 OD2 C:ASP141 2.6 63.0 1.0 N C:GLY138 3.0 70.6 1.0 OD1 C:ASP132 3.2 75.0 1.0 CG C:ASP132 3.2 73.5 1.0 OD1 C:ASP134 3.3 73.4 1.0 CG C:ASP141 3.4 63.7 1.0 C C:LEU136 3.5 72.0 1.0 CA C:GLY138 3.8 71.4 1.0 C C:LEU137 4.0 65.4 1.0 CA C:LEU137 4.1 65.0 1.0 CB C:ASP141 4.1 62.6 1.0 CG C:ASP134 4.1 75.3 1.0 OD1 C:ASP141 4.1 64.0 1.0 N C:LEU137 4.2 65.7 1.0 OD2 C:ASP134 4.2 74.6 1.0 OD2 C:ASP130 4.4 55.0 1.0 CA C:LEU136 4.6 73.9 1.0 CB C:ASP132 4.7 72.4 1.0 C C:GLY138 4.8 70.1 1.0 CB C:LEU136 4.8 74.1 1.0 CG C:ASP130 4.8 56.4 1.0 N C:LEU136 4.9 71.5 1.0 CB C:ASP130 5.0 54.8 1.0

Calcium binding site 6 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:69.3 occ:1.00 OE2 C:GLU182 2.6 75.1 1.0 O C:SER177 3.0 85.8 1.0 OD1 C:ASN179 3.7 72.9 1.0 CG C:ASN179 3.7 73.7 1.0 OD1 C:ASP171 3.8 87.6 1.0 CD C:GLU182 3.8 76.8 1.0 CB C:ASN179 3.9 73.5 1.0 N C:ASN179 4.0 73.7 1.0 CB C:ASP175 4.1 94.2 1.0 C C:SER177 4.2 85.0 1.0 OD2 C:ASP173 4.2 83.9 1.0 ND2 C:ASN179 4.2 72.0 1.0 OD2 C:ASP175 4.4 96.1 1.0 C C:ILE178 4.4 74.0 1.0 CB C:ASP173 4.4 81.9 1.0 CA C:ILE178 4.5 75.5 1.0 CD1 C:LEU136 4.6 72.4 1.0 OE1 C:GLU182 4.6 78.1 1.0 CA C:ASN179 4.6 72.7 1.0 CG C:ASP175 4.7 95.9 1.0 CG C:ASP173 4.8 82.9 1.0 CG C:GLU182 4.8 76.7 1.0 CG C:ASP171 4.8 89.5 1.0 N C:ILE178 4.9 76.3 1.0

Calcium binding site 7 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca301 b:85.2 occ:1.00 O E:LEU136 2.4 73.7 1.0 OD2 E:ASP132 2.4 74.6 1.0 OD2 E:ASP141 2.6 60.4 1.0 N E:GLY138 3.2 67.8 1.0 CG E:ASP132 3.2 75.4 1.0 OD1 E:ASP134 3.3 76.2 1.0 OD1 E:ASP132 3.3 76.7 1.0 CG E:ASP141 3.4 61.0 1.0 C E:LEU136 3.5 73.8 1.0 CA E:GLY138 3.9 67.8 1.0 CB E:ASP141 4.1 59.3 1.0 CG E:ASP134 4.1 77.4 1.0 CA E:LEU137 4.1 65.6 1.0 OD1 E:ASP141 4.1 61.3 1.0 C E:LEU137 4.1 65.9 1.0 N E:LEU137 4.2 65.7 1.0 OD2 E:ASP134 4.3 76.7 1.0 OD2 E:ASP130 4.3 54.2 1.0 CA E:LEU136 4.6 76.1 1.0 CB E:ASP132 4.6 73.7 1.0 CG E:ASP130 4.8 55.4 1.0 CB E:LEU136 4.8 76.2 1.0 N E:LEU136 4.8 73.7 1.0 C E:GLY138 4.9 66.1 1.0 CB E:ASP130 4.9 54.1 1.0

Calcium binding site 8 out of 8 in the Structure of Contracted C. Elegans Tmc-1 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Contracted C. Elegans Tmc-1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca302 b:71.0 occ:1.00 OE2 E:GLU182 2.6 75.8 1.0 O E:SER177 3.1 88.6 1.0 OD1 E:ASN179 3.6 77.3 1.0 CG E:ASN179 3.6 78.4 1.0 OD1 E:ASP171 3.8 88.9 1.0 CB E:ASN179 3.8 78.4 1.0 CD E:GLU182 3.9 78.0 1.0 N E:ASN179 4.0 78.1 1.0 ND2 E:ASN179 4.1 76.8 1.0 OD2 E:ASP173 4.1 86.2 1.0 CB E:ASP175 4.2 96.8 1.0 C E:SER177 4.3 87.7 1.0 C E:ILE178 4.4 77.3 1.0 CB E:ASP173 4.4 84.3 1.0 CA E:ILE178 4.6 78.3 1.0 CA E:ASN179 4.6 77.2 1.0 OD2 E:ASP175 4.6 98.7 1.0 CD1 E:LEU136 4.7 74.7 1.0 CG E:ASP173 4.7 85.1 1.0 OE1 E:GLU182 4.7 79.6 1.0 CG E:GLU182 4.7 78.0 1.0 CG E:ASP171 4.8 90.5 1.0 N E:ILE178 4.9 79.2 1.0 CG E:ASP175 4.9 98.3 1.0

H.Jeong, S.Clark, A.Goehring, S.Dehghani-Ghahnaviyeh, A.Rasouli, E.Tajkhorshid, E.Gouaux. Structures of the Tmc-1 Complex Illuminate Mechanosensory Transduction. Nature V. 610 796 2022.
ISSN: ESSN 1476-4687
PubMed: 36224384
DOI: 10.1038/S41586-022-05314-8