Calcium in PDB 7usy: Structure of C. Elegans Tmc-1 Complex with Arrd-6

The binding sites of Calcium atom in the Structure of C. Elegans Tmc-1 Complex with Arrd-6 (pdb code 7usy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of C. Elegans Tmc-1 Complex with Arrd-6, PDB code: 7usy:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:7.3 occ:1.00 OD2 A:ASP695 2.3 2.9 1.0 OD1 A:ASP695 2.4 7.6 1.0 CG A:ASP695 2.6 0.7 1.0 ND2 A:ASN772 3.9 3.8 1.0 CB A:ASP695 4.1 1.1 1.0 OD1 A:ASN772 4.2 3.8 1.0 CG A:ASN772 4.5 9.2 1.0 CG2 A:ILE694 4.6 2.6 1.0 NH1 A:ARG764 4.7 0.4 1.0 O A:GLU722 4.8 19.4 1.0 CD1 A:PHE723 4.9 6.1 1.0 CA A:ASP695 5.0 6.7 1.0

Calcium binding site 2 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:30.0 occ:1.00 OG1 A:THR687 3.2 7.2 1.0 OD2 A:ASP683 3.5 0.2 1.0 CD2 A:LEU760 3.5 6.1 1.0 OD1 A:ASP683 4.0 5.6 1.0 CB A:HIS731 4.1 4.6 1.0 CB A:THR687 4.1 7.9 1.0 CD1 A:LEU760 4.2 5.9 1.0 CG A:ASP683 4.2 8.8 1.0 CG2 A:THR687 4.2 2.5 1.0 CG A:LEU760 4.4 1.9 1.0 CE A:LYS756 4.6 2.1 1.0 CG A:HIS731 4.6 7.4 1.0 NE2 A:HIS404 4.6 9.4 1.0 O A:HIS731 4.7 6.7 1.0 NZ A:LYS756 4.7 8.9 1.0 C A:HIS731 4.8 5.8 1.0 ND1 A:HIS731 4.9 5.0 1.0 CA A:HIS731 5.0 0.4 1.0 O A:ASP683 5.0 5.4 1.0

Calcium binding site 3 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1301 b:8.2 occ:1.00 OD2 B:ASP695 2.3 2.9 1.0 CG B:ASP695 3.1 2.1 1.0 OD1 B:ASP695 3.1 1.8 1.0 ND2 B:ASN772 3.4 2.9 1.0 NH1 B:ARG764 3.7 1.5 1.0 CD1 B:PHE723 4.1 2.4 1.0 OD1 B:ASN772 4.2 6.8 1.0 CG B:ASN772 4.2 6.9 1.0 CE1 B:PHE723 4.4 7.3 1.0 CB B:ASP695 4.5 1.7 1.0 CZ B:ARG764 5.0 2.7 1.0 CB B:ALA767 5.0 8.0 1.0

Calcium binding site 4 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1302 b:3.2 occ:1.00 OD1 B:ASP683 2.9 5.8 1.0 ND2 B:ASN734 2.9 0.2 1.0 CG B:ASP683 3.5 5.6 1.0 CB B:ASP683 3.9 1.3 1.0 CG2 B:THR403 4.0 0.4 1.0 CG B:ASN734 4.0 4.7 1.0 OD2 B:ASP683 4.3 7.8 1.0 CB B:THR403 4.4 3.9 1.0 OG1 B:THR403 4.5 3.5 1.0 OD1 B:ASN734 4.6 0.5 1.0

Calcium binding site 5 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:87.2 occ:1.00 OD1 C:ASP134 2.3 80.8 1.0 OD1 C:ASP132 2.3 76.0 1.0 O C:LEU136 2.4 79.7 1.0 OD2 C:ASP132 2.4 82.4 1.0 OD2 C:ASP141 2.5 72.9 1.0 CG C:ASP132 2.7 83.8 1.0 CG C:ASP134 3.2 84.8 1.0 C C:LEU136 3.5 86.0 1.0 OD2 C:ASP134 3.5 82.5 1.0 CG C:ASP141 3.6 72.6 1.0 N C:GLY138 3.9 110.8 1.0 OD1 C:ASP141 4.1 67.4 1.0 CB C:ASP132 4.2 85.0 1.0 N C:LEU137 4.3 87.7 1.0 CA C:LEU136 4.4 84.8 1.0 CA C:LEU137 4.4 84.9 1.0 N C:LEU136 4.4 81.2 1.0 CB C:ASP134 4.5 81.9 1.0 CB C:LEU136 4.6 77.4 1.0 N C:ASP132 4.6 85.5 1.0 C C:LEU137 4.6 80.9 1.0 CB C:ASP130 4.6 77.2 1.0 N C:ASP134 4.6 82.8 1.0 CA C:GLY138 4.7 113.5 1.0 CB C:ASP141 4.8 65.2 1.0 N C:GLY133 5.0 82.7 1.0 CA C:ASP132 5.0 78.5 1.0

Calcium binding site 6 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:81.5 occ:1.00 OD1 C:ASP171 1.4 103.8 1.0 OE2 C:GLU182 2.0 64.5 1.0 OE1 C:GLU182 2.1 59.8 1.0 CD C:GLU182 2.3 65.2 1.0 CG C:ASP171 2.5 103.2 1.0 O C:SER177 2.6 97.0 1.0 OD2 C:ASP171 3.2 105.0 1.0 CB C:ASP171 3.5 100.7 1.0 CA C:ASP171 3.6 99.4 1.0 CG C:GLU182 3.8 61.1 1.0 C C:SER177 3.8 98.9 1.0 N C:LEU172 4.0 78.3 1.0 CA C:ILE178 4.2 72.1 1.0 C C:ASP171 4.3 99.9 1.0 O C:ALA170 4.4 120.1 1.0 N C:ASP173 4.4 90.0 1.0 CB C:GLU182 4.5 66.3 1.0 N C:ILE178 4.5 65.9 1.0 CB C:ASP173 4.7 88.8 1.0 N C:ASN179 4.8 64.6 1.0 N C:ASP171 4.8 96.1 1.0 N C:SER177 4.8 95.4 1.0 CA C:SER177 4.9 100.1 1.0 CG1 C:ILE178 5.0 71.9 1.0

Calcium binding site 7 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca301 b:11.9 occ:1.00 O E:LEU136 2.3 78.3 1.0 OD1 E:ASP132 2.3 59.3 1.0 OD1 E:ASP134 2.3 71.7 1.0 CB E:ASP130 3.1 24.5 1.0 N E:LEU136 3.3 77.7 1.0 C E:LEU136 3.3 77.3 1.0 N E:ASP134 3.3 68.5 1.0 OD2 E:ASP141 3.3 63.8 1.0 CG E:ASP132 3.4 53.2 1.0 CG E:ASP134 3.6 68.7 1.0 N E:GLY133 3.7 47.5 1.0 N E:GLU135 3.7 79.5 1.0 OD2 E:ASP130 3.8 31.2 1.0 OD2 E:ASP132 3.8 54.3 1.0 CG E:ASP130 3.8 26.2 1.0 CA E:LEU136 3.8 71.1 1.0 C E:ASP134 4.1 69.2 1.0 CA E:ASP134 4.1 70.8 1.0 CA E:GLY133 4.1 49.7 1.0 C E:GLY133 4.1 53.1 1.0 CA E:ASP130 4.3 32.8 1.0 C E:GLU135 4.3 80.2 1.0 N E:LEU137 4.3 41.2 1.0 CB E:ASP134 4.4 75.3 1.0 CA E:GLU135 4.4 82.2 1.0 OD2 E:ASP134 4.4 73.3 1.0 CG E:ASP141 4.5 64.4 1.0 N E:TYR131 4.5 44.2 1.0 N E:ASP132 4.5 59.5 1.0 CB E:LEU136 4.6 73.6 1.0 CB E:ASP132 4.6 54.5 1.0 C E:ASP132 4.7 54.4 1.0 CA E:LEU137 4.7 44.6 1.0 C E:ASP130 4.8 28.0 1.0 CA E:ASP132 4.8 50.9 1.0 OD1 E:ASP130 4.8 28.7 1.0 O E:ASP134 4.9 68.3 1.0

Calcium binding site 8 out of 8 in the Structure of C. Elegans Tmc-1 Complex with Arrd-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of C. Elegans Tmc-1 Complex with Arrd-6 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca302 b:171.4 occ:1.00 O E:SER177 2.7 99.8 1.0 OD1 E:ASP171 3.2 111.1 1.0 C E:SER177 3.8 95.3 1.0 N E:ASN179 4.1 67.8 1.0 CA E:ILE178 4.2 78.2 1.0 CG E:ASP171 4.3 113.5 1.0 N E:ILE178 4.4 81.4 1.0 CG E:GLU182 4.6 75.4 1.0 CB E:ASP175 4.6 178.1 1.0 CB E:GLU182 4.6 83.8 1.0 C E:ILE178 4.6 84.4 1.0 CB E:ASP173 4.6 163.8 1.0 OG E:SER177 4.6 98.9 1.0 CG E:ASP175 4.7 183.7 1.0 N E:ASP173 4.7 163.6 1.0 CB E:ASN179 4.8 64.0 1.0 CG E:ASP173 4.8 164.4 1.0 OD2 E:ASP175 4.8 186.5 1.0 OD2 E:ASP173 4.8 165.9 1.0 N E:LEU172 4.9 131.3 1.0 CG E:ASN179 4.9 72.3 1.0 CA E:SER177 4.9 97.9 1.0 N E:SER177 5.0 99.0 1.0 OD2 E:ASP171 5.0 111.4 1.0

H.Jeong, S.Clark, A.Goehring, S.Dehghani-Ghahnaviyeh, A.Rasouli, E.Tajkhorshid, E.Gouaux. Structures of the Tmc-1 Complex Illuminate Mechanosensory Transduction. Nature V. 610 796 2022.
ISSN: ESSN 1476-4687
PubMed: 36224384
DOI: 10.1038/S41586-022-05314-8