Calcium in PDB 7v3k: Crystal Structure of MAJ1

The structure of Crystal Structure of MAJ1, PDB code: 7v3k was solved by Y.H.Wang, R.G.Cui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.89 / 2.49
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	114.864, 114.864, 264.506, 90, 90, 90
R / Rfree (%)	18.7 / 24

The binding sites of Calcium atom in the Crystal Structure of MAJ1 (pdb code 7v3k). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of MAJ1, PDB code: 7v3k:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of MAJ1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of MAJ1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca406 b:116.0 occ:1.00 O A:HOH505 2.4 36.4 1.0 OG A:SER130 2.4 35.0 1.0 NE2 A:HIS262 2.7 38.5 1.0 CB A:SER130 3.0 33.4 1.0 CD2 A:HIS262 3.3 33.5 1.0 CE1 A:HIS262 3.8 36.2 1.0 C14 A:OLA403 4.1 59.6 1.0 N A:THR54 4.3 32.8 1.0 CG1 A:VAL229 4.4 35.5 1.0 OG1 A:THR54 4.5 27.5 1.0 CB A:THR54 4.5 30.2 1.0 CA A:SER130 4.5 31.2 1.0 CZ2 A:TRP129 4.5 33.0 1.0 CG A:HIS262 4.6 35.3 1.0 CE2 A:TRP129 4.7 34.8 1.0 O1 A:OLA401 4.7 57.3 1.0 O A:THR54 4.8 32.5 1.0 ND1 A:HIS262 4.8 31.5 1.0 N A:GLN131 4.8 31.9 1.0 NE1 A:TRP129 4.9 33.6 1.0 CA A:THR54 5.0 31.4 1.0 CH2 A:TRP129 5.0 32.5 1.0 C15 A:OLA403 5.0 57.7 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of MAJ1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of MAJ1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca403 b:79.7 occ:1.00 O C:GLY90 2.2 36.0 1.0 O C:HOH546 2.5 36.0 1.0 OD1 C:ASP83 2.5 36.1 1.0 O C:GLU84 2.7 41.5 1.0 O C:HOH522 2.8 38.5 1.0 C C:GLY90 3.3 34.9 1.0 C C:GLU84 3.6 37.0 1.0 O C:LEU95 3.7 37.1 1.0 CG C:ASP83 3.7 36.2 1.0 N C:GLU84 3.8 32.8 1.0 CA C:GLY90 3.8 34.1 1.0 CA C:GLU84 4.4 35.1 1.0 N C:GLN91 4.4 37.7 1.0 OD2 C:ASP83 4.4 42.3 1.0 N C:ASN85 4.6 41.1 1.0 CD1 C:TYR96 4.6 34.4 1.0 C C:ASP83 4.6 35.2 1.0 CA C:ASP83 4.6 36.4 1.0 CA C:ASN85 4.6 40.5 1.0 O C:HOH514 4.6 40.3 1.0 OG1 C:THR98 4.7 33.8 1.0 CE1 C:TYR96 4.7 28.3 1.0 CB C:ASP83 4.7 33.9 1.0 CA C:GLN91 4.7 33.1 1.0 O C:LEU92 4.9 36.8 1.0 C C:LEU95 4.9 31.8 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of MAJ1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of MAJ1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca405 b:52.8 occ:1.00 O B:GLU84 2.2 43.0 1.0 O B:HOH579 2.4 35.4 1.0 OD1 B:ASP83 2.4 34.7 1.0 O B:GLY90 2.5 32.9 1.0 O B:HOH517 2.8 30.9 1.0 C B:GLU84 3.2 37.8 1.0 N B:GLU84 3.3 39.3 1.0 C B:GLY90 3.5 32.5 1.0 CG B:ASP83 3.6 31.5 1.0 O B:LEU95 3.9 39.6 1.0 CA B:GLU84 3.9 38.5 1.0 CA B:GLY90 3.9 32.3 1.0 N B:ASN85 4.2 45.0 1.0 C B:ASP83 4.2 36.2 1.0 OD2 B:ASP83 4.3 35.9 1.0 CA B:ASP83 4.4 30.8 1.0 CA B:ASN85 4.4 40.7 1.0 CD1 B:TYR96 4.5 32.6 1.0 OD1 B:ASN85 4.5 54.5 1.0 CB B:ASP83 4.5 30.8 1.0 N B:GLN91 4.6 35.7 1.0 CE1 B:TYR96 4.8 35.0 1.0 OG1 B:THR98 4.8 33.0 1.0

Y.H.Wang, R.G.Cui. Crystal Structure of MAJ1 To Be Published.