Calcium in PDB 7vme: Crystal Structure of A Hydrolase in Apo Form 2

The structure of Crystal Structure of A Hydrolase in Apo Form 2, PDB code: 7vme was solved by P.Wu, Y.P.Zhao, Z.S.Li, M.C.Ingrid, P.Lara, J.Gao, X.Han, Q.Li, O.Basak, W.D.Liu, R.Wei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.60 / 1.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.7, 65.954, 82.885, 90, 90, 90
R / Rfree (%)	17.2 / 21

The binding sites of Calcium atom in the Crystal Structure of A Hydrolase in Apo Form 2 (pdb code 7vme). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Hydrolase in Apo Form 2, PDB code: 7vme:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A Hydrolase in Apo Form 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Hydrolase in Apo Form 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:30.1 occ:1.00 OD1 A:ASN232 2.4 20.8 1.0 O A:HOH612 2.4 25.1 1.0 OE1 A:GLU202 2.4 20.1 1.0 OD1 A:ASN233 2.5 24.6 1.0 O A:HOH548 2.5 29.8 1.0 CD A:GLU202 3.2 23.9 1.0 OE2 A:GLU202 3.3 24.7 1.0 CG A:ASN233 3.5 28.9 1.0 CG A:ASN232 3.5 24.2 1.0 N A:ASN233 4.0 17.7 1.0 ND2 A:ASN233 4.1 26.8 1.0 ND2 A:ASN232 4.1 24.0 1.0 O A:HOH569 4.2 32.2 1.0 CA A:ASN233 4.4 21.3 1.0 O A:HOH640 4.5 31.4 1.0 CB A:ASN233 4.6 18.1 1.0 CG A:GLU202 4.7 24.3 1.0 C A:ASN232 4.7 20.2 1.0 CB A:ASN232 4.7 19.9 1.0 CA A:ASN232 4.8 18.4 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A Hydrolase in Apo Form 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Hydrolase in Apo Form 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:43.0 occ:1.00 O A:HOH449 2.2 25.5 1.0 O A:HOH426 2.2 20.9 1.0 O A:THR288 2.4 14.3 1.0 O A:PRO290 2.4 23.9 1.0 O A:HOH510 2.5 22.4 1.0 O A:HOH568 2.9 33.4 1.0 C A:THR288 3.6 16.7 1.0 C A:PRO290 3.6 21.4 1.0 N A:PRO290 3.9 20.3 1.0 O A:HOH579 4.0 28.8 1.0 OE1 A:GLU293 4.0 27.8 1.0 C A:CYS289 4.0 16.1 1.0 CB A:THR288 4.1 16.9 1.0 O A:CYS289 4.3 18.8 1.0 OD1 A:ASP225 4.3 16.7 1.0 CA A:PRO290 4.3 16.8 1.0 CD A:PRO290 4.4 20.7 1.0 CA A:THR288 4.4 17.8 1.0 OG1 A:THR288 4.5 16.8 1.0 N A:CYS289 4.5 16.3 1.0 CA A:CYS289 4.5 15.9 1.0 N A:TYR291 4.6 17.4 1.0 CD A:GLU293 4.8 30.1 1.0 CD1 A:TYR291 4.8 15.2 1.0 CA A:TYR291 4.9 21.8 1.0 O A:ASP222 5.0 21.0 1.0

P.Wu, Y.P.Zhao, Z.S.Li, M.C.Ingrid, P.Lara, J.Gao, X.Han, Q.Li, O.Basak, W.D.Liu, R.Wei. Crystal Structure of A Hydrolase in Apo Form 2 To Be Published.