Calcium in PDB 7vvh: Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G
Protein crystallography data
The structure of Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G, PDB code: 7vvh
was solved by
L.Chen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.27 /
2.30
|
Space group
|
P 21 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.775,
63.882,
79.417,
90,
90,
90
|
R / Rfree (%)
|
23.9 /
27.2
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G
(pdb code 7vvh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G, PDB code: 7vvh:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 7vvh
Go back to
Calcium Binding Sites List in 7vvh
Calcium binding site 1 out
of 2 in the Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:70.4
occ:0.73
|
O
|
C:THR26
|
2.2
|
67.1
|
1.0
|
OD1
|
C:ASP22
|
2.3
|
81.1
|
1.0
|
OD2
|
C:ASP22
|
2.4
|
78.5
|
1.0
|
OE1
|
C:GLU31
|
2.4
|
63.7
|
1.0
|
OD1
|
C:ASP24
|
2.6
|
77.0
|
1.0
|
CG
|
C:ASP22
|
2.6
|
79.0
|
1.0
|
OD1
|
C:ASP20
|
2.8
|
72.5
|
1.0
|
CD
|
C:GLU31
|
3.1
|
67.1
|
1.0
|
OE2
|
C:GLU31
|
3.1
|
70.7
|
1.0
|
C
|
C:THR26
|
3.4
|
68.0
|
1.0
|
CG
|
C:ASP24
|
3.4
|
76.0
|
1.0
|
OD2
|
C:ASP24
|
3.5
|
73.1
|
1.0
|
OG1
|
C:THR26
|
3.8
|
69.5
|
1.0
|
CG
|
C:ASP20
|
4.0
|
71.2
|
1.0
|
CB
|
C:ASP22
|
4.1
|
73.8
|
1.0
|
N
|
C:THR26
|
4.2
|
68.6
|
1.0
|
N
|
C:ILE27
|
4.2
|
64.9
|
1.0
|
CA
|
C:THR26
|
4.3
|
68.4
|
1.0
|
CA
|
C:ILE27
|
4.3
|
64.2
|
1.0
|
CG
|
C:GLU31
|
4.4
|
62.3
|
1.0
|
CA
|
C:ASP20
|
4.5
|
67.3
|
1.0
|
N
|
C:THR28
|
4.6
|
60.6
|
1.0
|
N
|
C:ASP22
|
4.6
|
73.8
|
1.0
|
N
|
C:ASP24
|
4.6
|
72.7
|
1.0
|
CB
|
C:THR26
|
4.7
|
69.5
|
1.0
|
CB
|
C:ASP24
|
4.7
|
73.4
|
1.0
|
CB
|
C:ASP20
|
4.7
|
67.4
|
1.0
|
OG1
|
C:THR28
|
4.8
|
61.5
|
1.0
|
CG2
|
C:THR28
|
4.9
|
61.4
|
1.0
|
C
|
C:ILE27
|
4.9
|
63.1
|
1.0
|
N
|
C:GLY23
|
4.9
|
74.0
|
1.0
|
CA
|
C:ASP22
|
4.9
|
75.7
|
1.0
|
C
|
C:ASP20
|
4.9
|
67.1
|
1.0
|
OD2
|
C:ASP20
|
4.9
|
70.4
|
1.0
|
|
Calcium binding site 2 out
of 2 in 7vvh
Go back to
Calcium Binding Sites List in 7vvh
Calcium binding site 2 out
of 2 in the Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the KV7.1 C-Terminal Domain in Complex with Calmodulin Disease Mutation E140G within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:77.0
occ:0.80
|
OD1
|
C:ASP56
|
2.0
|
70.6
|
1.0
|
OE2
|
C:GLU67
|
2.2
|
70.2
|
1.0
|
ND2
|
C:ASN60
|
2.2
|
76.0
|
1.0
|
O
|
C:THR62
|
2.5
|
69.2
|
1.0
|
OD2
|
C:ASP58
|
2.6
|
80.2
|
1.0
|
CD
|
C:GLU67
|
2.9
|
65.6
|
1.0
|
OE1
|
C:GLU67
|
2.9
|
64.8
|
1.0
|
OD1
|
C:ASP58
|
3.0
|
77.3
|
1.0
|
CG
|
C:ASP58
|
3.0
|
77.5
|
1.0
|
CG
|
C:ASN60
|
3.2
|
76.5
|
1.0
|
CG
|
C:ASP56
|
3.2
|
71.8
|
1.0
|
OD1
|
C:ASN60
|
3.5
|
74.4
|
1.0
|
C
|
C:THR62
|
3.6
|
67.4
|
1.0
|
OD2
|
C:ASP56
|
3.9
|
71.2
|
1.0
|
OG1
|
C:THR62
|
4.0
|
65.9
|
1.0
|
CB
|
C:ASP58
|
4.2
|
77.5
|
1.0
|
CB
|
C:ASP56
|
4.3
|
68.1
|
1.0
|
CG
|
C:GLU67
|
4.3
|
65.2
|
1.0
|
CA
|
C:ASP56
|
4.4
|
68.5
|
1.0
|
N
|
C:THR62
|
4.4
|
70.2
|
1.0
|
N
|
C:ASP58
|
4.4
|
76.6
|
1.0
|
N
|
C:ALA57
|
4.4
|
71.1
|
1.0
|
N
|
C:ILE63
|
4.4
|
64.2
|
1.0
|
CA
|
C:ILE63
|
4.5
|
64.2
|
1.0
|
CA
|
C:THR62
|
4.5
|
69.8
|
1.0
|
N
|
C:ASN60
|
4.5
|
74.8
|
1.0
|
CB
|
C:ASN60
|
4.5
|
75.8
|
1.0
|
N
|
C:GLY59
|
4.6
|
76.8
|
1.0
|
N
|
C:ASP64
|
4.6
|
62.8
|
1.0
|
C
|
C:ASP56
|
4.8
|
70.7
|
1.0
|
CA
|
C:ASP58
|
4.8
|
76.9
|
1.0
|
CB
|
C:THR62
|
4.9
|
66.1
|
1.0
|
C
|
C:ILE63
|
5.0
|
64.5
|
1.0
|
N
|
C:GLY61
|
5.0
|
74.4
|
1.0
|
|
Reference:
L.Chen,
L.Chen.
N/A N/A.
Page generated: Tue Apr 4 19:04:45 2023
|