Calcium in PDB 7w72: Structure of A Human Glycosylphosphatidylinositol (Gpi) Transamidase

The binding sites of Calcium atom in the Structure of A Human Glycosylphosphatidylinositol (Gpi) Transamidase (pdb code 7w72). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of A Human Glycosylphosphatidylinositol (Gpi) Transamidase, PDB code: 7w72:

Calcium binding site 1 out of 1 in the Structure of A Human Glycosylphosphatidylinositol (Gpi) Transamidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Human Glycosylphosphatidylinositol (Gpi) Transamidase within 5.0Å range: probe atom residue distance (Å) B Occ K:Ca401 b:5.6 occ:1.00 OD1 K:ASP120 2.4 9.3 1.0 O K:ILE82 2.4 8.3 1.0 O K:ASP79 2.4 11.7 1.0 OD2 K:ASP120 2.6 9.3 1.0 CG K:ASP120 2.8 9.3 1.0 C K:ASP79 3.5 11.7 1.0 C K:ILE82 3.6 8.3 1.0 O K:SER146 3.9 10.3 1.0 CA K:SER80 4.3 11.8 1.0 CB K:ASP120 4.3 9.3 1.0 N K:SER80 4.3 11.8 1.0 N K:ILE82 4.4 8.3 1.0 C K:SER80 4.4 11.8 1.0 O K:SER80 4.5 11.8 1.0 CA K:ASP79 4.5 11.7 1.0 CA K:ILE82 4.5 8.3 1.0 N K:VAL83 4.5 7.5 1.0 CB K:SER146 4.6 10.3 1.0 CA K:VAL83 4.6 7.5 1.0 CB K:GLU118 4.7 30.0 1.0 O K:GLU118 4.7 11.0 1.0 CB K:ASP79 4.7 11.7 1.0 C K:SER146 4.8 10.3 1.0 CB K:ILE82 4.8 8.3 1.0 CA K:SER146 4.9 10.3 1.0 N K:LEU84 4.9 8.1 1.0

H.Zhang, J.Su, B.Li, Y.Gao, M.Liu, L.He, H.Xu, Y.Dong, X.C.Zhang, Y.Zhao. Structure of Human Glycosylphosphatidylinositol Transamidase. Nat.Struct.Mol.Biol. V. 29 203 2022.
ISSN: ESSN 1545-9985
PubMed: 35165458
DOI: 10.1038/S41594-022-00726-6