Calcium in PDB 7wld: Cryo-Em Structure of the Human Glycosylphosphatidylinositol Transamidase Complex at 2.53 Angstrom Resolution

The binding sites of Calcium atom in the Cryo-Em Structure of the Human Glycosylphosphatidylinositol Transamidase Complex at 2.53 Angstrom Resolution (pdb code 7wld). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of the Human Glycosylphosphatidylinositol Transamidase Complex at 2.53 Angstrom Resolution, PDB code: 7wld:

Calcium binding site 1 out of 1 in the Cryo-Em Structure of the Human Glycosylphosphatidylinositol Transamidase Complex at 2.53 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Human Glycosylphosphatidylinositol Transamidase Complex at 2.53 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ K:Ca701 b:22.0 occ:1.00 O K:ILE82 2.4 24.6 1.0 OD2 K:ASP120 2.7 24.6 1.0 O K:ASP79 2.8 28.8 1.0 OD1 K:ASP120 2.8 24.6 1.0 CG K:ASP120 3.1 24.6 1.0 C K:ILE82 3.7 24.6 1.0 C K:ASP79 4.0 28.8 1.0 OD1 K:ASP79 4.1 28.8 1.0 O K:SER146 4.4 28.1 1.0 N K:ILE82 4.6 24.6 1.0 N K:VAL83 4.6 21.8 1.0 CA K:ILE82 4.6 24.6 1.0 CA K:VAL83 4.6 21.8 1.0 CB K:ASP120 4.6 24.6 1.0 CA K:SER80 4.6 27.2 1.0 O K:GLU118 4.8 29.8 1.0 N K:SER80 4.8 27.2 1.0 CB K:ILE82 4.8 24.6 1.0 C K:SER80 4.9 27.2 1.0 CG K:ASP79 4.9 28.8 1.0 N K:LEU84 4.9 23.5 1.0 CA K:ASP79 5.0 28.8 1.0

Y.Xu, G.Jia, T.Li, Z.Zhou, Y.Luo, Y.Chao, J.Bao, Z.Su, Q.Qu, D.Li. Molecular Insights Into Biogenesis of Glycosylphosphatidylinositol Anchor Proteins. Nat Commun V. 13 2617 2022.
ISSN: ESSN 2041-1723
PubMed: 35551457
DOI: 10.1038/S41467-022-30250-6