Calcium in PDB 7wwo: Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus

The structure of Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus, PDB code: 7wwo was solved by I.Yuvaraj, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	68.63 / 2.17
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.422, 90.422, 141.707, 90, 90, 120
R / Rfree (%)	18.6 / 21.7

The binding sites of Calcium atom in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus (pdb code 7wwo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus, PDB code: 7wwo:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:26.9 occ:1.00 OD2 A:ASP40 2.2 29.8 1.0 O B:ILE24 2.3 23.5 1.0 OE2 A:GLU170 2.3 30.1 1.0 O A:THR171 2.3 30.3 1.0 OE1 A:GLU29 2.5 42.4 1.0 OG B:SER25 2.5 33.9 1.0 OE2 A:GLU29 2.6 47.7 1.0 CD A:GLU29 2.9 39.6 1.0 C B:ILE24 3.3 25.1 1.0 CG A:ASP40 3.4 33.3 1.0 CD A:GLU170 3.4 39.9 1.0 C A:THR171 3.5 30.7 1.0 CB B:SER25 3.5 33.4 1.0 CA B:SER25 3.7 29.1 1.0 N B:SER25 3.9 23.3 1.0 O A:HOH330 3.9 30.3 1.0 CB A:ASP40 4.1 32.2 1.0 CG A:GLU170 4.2 40.4 1.0 N A:THR171 4.3 33.8 1.0 N A:THR172 4.3 30.8 1.0 OE1 A:GLU170 4.3 37.7 1.0 CA A:THR172 4.3 32.8 1.0 OD1 A:ASP40 4.4 35.4 1.0 CG A:GLU29 4.4 34.9 1.0 O B:HOH309 4.5 37.2 1.0 CA A:THR171 4.5 34.3 1.0 N B:ILE24 4.5 27.0 1.0 CG2 A:THR171 4.6 43.3 1.0 CA B:ILE24 4.6 27.9 1.0 OG1 A:THR172 4.7 35.3 1.0

Calcium binding site 2 out of 4 in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:36.4 occ:1.00 O A:HOH322 2.0 35.6 1.0 O A:ALA103 2.2 36.6 1.0 OD1 A:ASP97 2.3 42.3 1.0 O A:GLY98 2.3 33.6 1.0 O A:GLY101 2.5 43.2 1.0 OD2 A:ASP95 2.6 30.1 1.0 OD1 A:ASP95 2.7 36.7 1.0 CG A:ASP95 3.0 32.7 1.0 C A:GLY98 3.4 34.7 1.0 C A:ALA103 3.4 36.3 1.0 CG A:ASP97 3.5 49.7 1.0 C A:GLY101 3.5 40.5 1.0 N A:ALA103 3.8 35.8 1.0 N A:GLY98 3.9 36.8 1.0 CA A:GLY98 4.1 33.9 1.0 CA A:ALA103 4.1 39.5 1.0 C A:PRO102 4.1 40.4 1.0 OD2 A:ASP97 4.1 53.5 1.0 C A:ASP97 4.2 38.0 1.0 N A:PRO102 4.3 43.5 1.0 CA A:PRO102 4.3 42.3 1.0 CA A:GLY101 4.4 45.0 1.0 N A:GLY101 4.4 47.0 1.0 CB A:ALA103 4.5 38.9 1.0 N A:PRO99 4.5 35.1 1.0 CB A:ASP95 4.5 29.4 1.0 N A:SER104 4.5 42.7 1.0 O A:HOH309 4.5 47.9 1.0 O A:ASP97 4.6 39.7 1.0 CB A:ASP97 4.6 42.5 1.0 CA A:PRO99 4.7 39.0 1.0 CA A:ASP97 4.7 41.1 1.0 N A:ASP97 4.7 36.9 1.0 O A:PRO102 4.8 48.4 1.0 CA A:SER104 4.9 41.8 1.0 C A:PRO99 5.0 41.8 1.0

Calcium binding site 3 out of 4 in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:26.1 occ:1.00 O B:THR171 2.2 30.6 1.0 OE2 B:GLU170 2.2 30.5 1.0 O A:ILE24 2.3 23.6 1.0 OD2 B:ASP40 2.3 29.8 1.0 OE2 B:GLU29 2.4 42.2 1.0 OG A:SER25 2.6 29.1 1.0 OE1 B:GLU29 2.6 37.5 1.0 CD B:GLU29 2.9 36.5 1.0 C B:THR171 3.4 29.2 1.0 C A:ILE24 3.4 23.0 1.0 CD B:GLU170 3.4 37.6 1.0 CG B:ASP40 3.5 34.6 1.0 CB A:SER25 3.6 29.6 1.0 CA A:SER25 3.7 27.1 1.0 N A:SER25 3.9 23.2 1.0 O B:HOH316 3.9 27.4 1.0 CG B:GLU170 4.1 38.5 1.0 CB B:ASP40 4.1 32.8 1.0 N B:THR171 4.2 31.1 1.0 N B:THR172 4.2 26.1 1.0 CA B:THR172 4.3 30.8 1.0 OE1 B:GLU170 4.4 37.1 1.0 CG B:GLU29 4.4 35.1 1.0 O A:HOH306 4.4 37.7 1.0 CA B:THR171 4.4 33.4 1.0 OD1 B:ASP40 4.5 32.8 1.0 CG2 B:THR171 4.6 48.1 1.0 N A:ILE24 4.6 24.4 1.0 CA A:ILE24 4.6 23.4 1.0 OG1 B:THR172 4.7 32.8 1.0

Calcium binding site 4 out of 4 in the Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Dimer Form of Hypothetical Protein TTHA1873 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:47.6 occ:1.00 O B:HOH311 2.0 44.9 1.0 O B:GLY98 2.2 38.8 1.0 O B:ALA103 2.2 44.3 1.0 OD1 B:ASP97 2.4 61.1 1.0 OD2 B:ASP95 2.5 48.4 1.0 O B:GLY101 2.6 42.6 1.0 OD1 B:ASP95 2.7 41.6 1.0 CG B:ASP95 3.0 41.5 1.0 C B:GLY98 3.4 36.7 1.0 C B:ALA103 3.4 53.3 1.0 CG B:ASP97 3.5 57.2 1.0 C B:GLY101 3.6 53.2 1.0 N B:ALA103 3.8 51.4 1.0 N B:GLY98 3.8 36.9 1.0 CA B:GLY98 4.1 36.7 1.0 CA B:ALA103 4.1 53.6 1.0 C B:PRO102 4.1 53.9 1.0 OD2 B:ASP97 4.1 60.2 1.0 C B:ASP97 4.2 43.7 1.0 N B:GLY101 4.4 46.2 1.0 N B:PRO102 4.4 58.3 1.0 N B:PRO99 4.4 41.7 1.0 CA B:GLY101 4.4 45.9 1.0 CB B:ALA103 4.5 51.0 1.0 CB B:ASP95 4.5 38.7 1.0 CA B:PRO102 4.5 61.1 1.0 N B:SER104 4.5 52.4 1.0 O B:PRO102 4.6 51.5 1.0 O B:ASP97 4.6 41.8 1.0 CA B:PRO99 4.6 43.9 1.0 CB B:ASP97 4.7 50.2 1.0 N B:ASP97 4.7 42.2 1.0 CA B:ASP97 4.8 43.7 1.0 CA B:SER104 4.9 53.8 1.0

I.Yuvaraj, S.K.Chaudhary, J.Jeyakanthan, K.Sekar. Structure of the Hypothetical Protein TTHA1873 From Thermus Thermophilus. Acta Crystallogr.,Sect.F V. 78 338 2022.
ISSN: ESSN 2053-230X
PubMed: 36048084
DOI: 10.1107/S2053230X22008457