Calcium in PDB 7x2x: Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene

Protein crystallography data

The structure of Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene, PDB code: 7x2x was solved by J.Zhou, J.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.93 / 1.58
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.616, 78.616, 163.064, 90, 90, 90
R / Rfree (%) 16.4 / 18.9

Other elements in 7x2x:

The structure of Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene (pdb code 7x2x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene, PDB code: 7x2x:

Calcium binding site 1 out of 1 in 7x2x

Go back to Calcium Binding Sites List in 7x2x
Calcium binding site 1 out of 1 in the Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Hetero-Diels-Alderase PYCR1 in Complex with 10- Hydroxy-8E-Humulene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:19.6
occ:1.00
OE1 A:GLN158 2.3 20.3 1.0
OE1 A:GLU48 2.4 20.4 1.0
O A:HOH603 2.4 21.7 1.0
O A:HOH602 2.4 20.9 1.0
OD1 A:ASN228 2.5 19.7 1.0
O A:HOH788 2.5 21.0 1.0
OD1 A:ASP275 2.5 20.8 1.0
O A:HOH698 3.3 21.6 1.0
CD A:GLN158 3.3 19.7 1.0
CG A:ASN228 3.5 19.4 1.0
CD A:GLU48 3.5 22.5 1.0
CG A:ASP275 3.6 20.7 1.0
ND2 A:ASN228 3.8 18.6 1.0
O A:HOH511 3.9 21.2 1.0
NE2 A:GLN158 4.1 20.5 1.0
OD2 A:ASP275 4.1 21.9 1.0
OE2 A:GLU48 4.1 20.1 1.0
CG A:GLN158 4.2 18.9 1.0
O A:HOH711 4.2 27.8 1.0
O A:ASP275 4.3 20.2 1.0
CG A:GLU48 4.7 19.1 1.0
ND2 A:ASN49 4.7 20.0 1.0
O A:GLU48 4.7 20.2 1.0
C A:ASP275 4.7 21.3 1.0
O A:THR322 4.7 20.2 1.0
CB A:ASP275 4.8 20.8 1.0
CB A:ASN228 4.9 19.7 1.0
OD2 A:ASP276 5.0 22.6 1.0
CA A:ASP275 5.0 19.1 1.0

Reference:

J.Zhou, J.Lu. Calcium-Dependent Glycosylated Enzyme in the Tandem Hetero-Diels-Alder Reaction To Be Published.
Page generated: Tue Apr 11 12:40:46 2023

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