Calcium in PDB 7x7h: Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae

Protein crystallography data

The structure of Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae, PDB code: 7x7h was solved by M.-K.Kim, J.Zhang, C.-K.Yoon, Y.-J.Seok, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.13 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.94, 62.355, 312.669, 90, 90, 90
R / Rfree (%) 17.9 / 22.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae (pdb code 7x7h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae, PDB code: 7x7h:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 7x7h

Go back to Calcium Binding Sites List in 7x7h
Calcium binding site 1 out of 2 in the Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca400

b:13.7
occ:1.00
O A:HOH597 2.3 14.9 1.0
OD1 A:ASN86 2.4 13.8 1.0
OE1 A:GLN89 2.4 12.7 1.0
HE22 A:GLN89 3.3 18.6 1.0
CG A:ASN86 3.3 16.0 1.0
CD A:GLN89 3.4 16.8 1.0
HA A:ASN86 3.4 17.7 1.0
NE2 A:GLN89 3.7 15.5 1.0
O A:HOH615 3.9 34.6 1.0
HD21 A:ASN86 4.0 18.8 1.0
ND2 A:ASN86 4.1 15.6 1.0
CA A:ASN86 4.1 14.7 1.0
HB3 A:GLN85 4.1 22.1 1.0
CB A:ASN86 4.3 12.4 1.0
OD1 A:ASP297 4.3 19.4 1.0
N A:ASN86 4.5 13.2 1.0
HB2 A:GLN89 4.5 19.2 1.0
HE21 A:GLN89 4.6 18.6 1.0
HB3 A:ASN86 4.6 14.9 1.0
H A:ASN86 4.7 15.9 1.0
CG A:GLN89 4.7 15.7 1.0
C A:GLN85 4.8 16.0 1.0
HD22 A:ASN86 4.9 18.8 1.0
O A:HOH670 5.0 42.2 1.0
O A:GLN85 5.0 12.0 1.0
OE2 A:GLU293 5.0 57.3 1.0

Calcium binding site 2 out of 2 in 7x7h

Go back to Calcium Binding Sites List in 7x7h
Calcium binding site 2 out of 2 in the Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca400

b:19.0
occ:1.00
OE1 C:GLN104 2.2 16.7 1.0
O C:HOH623 2.4 18.8 1.0
OD2 C:ASP102 2.5 21.1 1.0
OD1 C:ASP102 2.5 14.5 1.0
O C:HOH617 2.7 20.3 1.0
CG C:ASP102 2.8 16.8 1.0
HB2 C:GLN104 3.4 19.9 1.0
CD C:GLN104 3.4 19.4 1.0
H C:GLN104 3.8 21.9 1.0
HD2 C:PRO103 4.1 22.2 1.0
HE22 C:GLN104 4.2 23.1 1.0
CB C:GLN104 4.2 16.6 1.0
CB C:ASP102 4.3 19.8 1.0
NE2 C:GLN104 4.3 19.2 1.0
CG C:GLN104 4.3 16.2 1.0
HG13 C:ILE105 4.4 24.6 1.0
H C:ILE105 4.5 21.1 1.0
HG2 C:GLN104 4.6 19.2 1.0
N C:GLN104 4.6 18.2 1.0
HA C:ASP102 4.6 20.5 1.0
HB2 C:ASP102 4.6 23.8 1.0
HB3 C:ASP102 4.8 23.8 1.0
O C:HOH665 4.9 42.0 1.0
CA C:ASP102 4.9 17.0 1.0
HB3 C:GLN104 4.9 19.9 1.0
CD C:PRO103 4.9 18.4 1.0
O C:HOH570 4.9 35.0 1.0

Reference:

M.-K.Kim, J.Zhang, C.-K.Yoon, Y.-J.Seok. Crystal Structure of Fructose Regulator/Histidine Phosphocarrier Protein Complex From Vibrio Cholerae To Be Published.
Page generated: Tue Apr 4 19:13:03 2023

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