Calcium in PDB 7xli: Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh)

The structure of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh), PDB code: 7xli was solved by J.M.M.Caaveiro, S.Valenciano-Bellido, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.321, 48.58, 140.7, 90, 90, 90
R / Rfree (%)	20.9 / 23.7

The structure of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) (pdb code 7xli). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh), PDB code: 7xli:

Calcium binding site 1 out of 1 in the Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Isdb Linker-NEAT2 Bound to A Nanobody (Vhh) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:29.3 occ:1.00 O B:GLY111 2.3 29.2 1.0 OD1 B:ASP102 2.3 24.8 1.0 O B:HOH372 2.4 35.1 1.0 O B:HOH341 2.4 29.1 1.0 OD1 B:ASP113 2.4 32.0 1.0 O A:HOH604 2.6 35.2 1.0 O B:HOH306 2.6 32.6 1.0 CG B:ASP102 3.3 25.3 1.0 CG B:ASP113 3.3 31.8 1.0 C B:GLY111 3.4 27.2 1.0 OD2 B:ASP113 3.7 31.0 1.0 OD2 B:ASP102 3.7 25.2 1.0 CA B:GLY111 4.0 28.8 1.0 CB B:GLU104 4.1 29.0 1.0 OE1 A:GLU354 4.4 38.9 1.0 OE1 B:GLU104 4.4 31.5 1.0 O B:HOH355 4.4 37.1 1.0 CB B:ASP102 4.5 24.1 1.0 N B:ASP113 4.5 27.1 1.0 N B:MET112 4.5 27.1 1.0 C B:MET112 4.5 27.8 1.0 N B:GLU104 4.6 29.2 1.0 CB B:ASP113 4.7 30.2 1.0 CA B:ASP102 4.7 25.1 1.0 CA B:MET112 4.8 26.8 1.0 N B:ARG103 4.8 28.0 1.0 O B:MET112 4.8 26.6 1.0 CA B:ASP113 4.9 30.1 1.0

S.Valenciano-Bellido, J.M.M.Caaveiro, M.Nakakido, D.Kuroda, I.Nakagawa, K.Tsumoto. Generation of A Specific Antibody Against the Linker-NEAT3 Region of the Isdh Protein of S. Aureus Inhibiting Bacterial Growth Under Iron Limiting Conditions To Be Published.