Atomistry » Calcium » PDB 7xvv-7yq7 » 7ynz
Atomistry »
  Calcium »
    PDB 7xvv-7yq7 »
      7ynz »

Calcium in PDB 7ynz: Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry

Other elements in 7ynz:

The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry (pdb code 7ynz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry, PDB code: 7ynz:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 1 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:20.0
occ:1.00
OD2 A:ASP367 2.4 20.0 1.0
O A:SER533 2.4 20.0 1.0
OE1 A:GLU535 2.4 20.0 1.0
O A:SER600 2.5 20.0 1.0
OE2 A:GLU535 2.5 20.0 1.0
O A:ARG514 2.5 20.0 1.0
CD A:GLU535 2.8 20.0 1.0
C A:SER533 3.5 20.0 1.0
CG A:ASP367 3.6 20.0 1.0
C A:ARG514 3.7 20.0 1.0
C A:SER600 3.7 20.0 1.0
OG A:SER600 3.9 20.0 1.0
CA A:SER533 4.0 20.0 1.0
OD1 A:ASP367 4.2 20.0 1.0
CB A:SER533 4.2 20.0 1.0
CG A:GLU535 4.3 20.0 1.0
CA A:SER600 4.4 20.0 1.0
CA A:SER515 4.4 20.0 1.0
N A:SER515 4.5 20.0 1.0
N A:ARG514 4.5 20.0 1.0
N A:ASN534 4.6 20.0 1.0
CA A:ARG514 4.7 20.0 1.0
CB A:SER600 4.7 20.0 1.0
CB A:ASP367 4.7 20.0 1.0
N A:ASP601 4.7 20.0 1.0
OH A:TYR537 4.9 20.0 1.0
C A:SER515 4.9 20.0 1.0
CA A:ASP601 4.9 20.0 1.0
N A:GLU535 4.9 20.0 1.0
OG A:SER533 5.0 20.0 1.0
CA A:ASN534 5.0 20.0 1.0
N A:PHE516 5.0 20.0 1.0

Calcium binding site 2 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 2 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1103

b:20.0
occ:1.00
O A:ASP892 2.5 20.0 1.0
O A:GLN889 2.5 20.0 1.0
OD1 A:ASP895 2.5 20.0 1.0
OD1 G:ASN449 2.6 20.0 1.0
CG A:ASP895 3.2 20.0 1.0
OD2 A:ASP895 3.2 20.0 1.0
CG G:ASN449 3.4 20.0 1.0
ND2 G:ASN449 3.5 20.0 1.0
C A:GLN889 3.6 20.0 1.0
C A:ASP892 3.6 20.0 1.0
CB A:ASP897 3.9 20.0 1.0
OD2 A:ASP897 4.0 20.0 1.0
CA A:GLN889 4.1 20.0 1.0
O A:ASP895 4.1 20.0 1.0
CG A:ASP897 4.3 20.0 1.0
CA A:GLN893 4.3 20.0 1.0
N A:GLN893 4.4 20.0 1.0
CB A:GLN889 4.4 20.0 1.0
CB A:ASP895 4.5 20.0 1.0
C A:ASP895 4.6 20.0 1.0
CA A:ASP892 4.6 20.0 1.0
C A:GLN893 4.7 20.0 1.0
O A:GLN893 4.7 20.0 1.0
N A:ASP892 4.7 20.0 1.0
N A:PHE890 4.7 20.0 1.0
CA A:ASP897 4.8 20.0 1.0
N A:ASP897 4.8 20.0 1.0
CB G:ASN449 4.9 20.0 1.0
N A:ASP895 4.9 20.0 1.0
CA A:ASP895 4.9 20.0 1.0
O G:ASN449 4.9 20.0 1.0
CB A:ASP892 4.9 20.0 1.0

Calcium binding site 3 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 3 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1104

b:20.0
occ:1.00
O C:GLN889 2.4 20.0 1.0
O C:ASP892 2.4 20.0 1.0
OD1 A:ASN449 2.5 20.0 1.0
OD1 C:ASP895 2.8 20.0 1.0
ND2 A:ASN449 3.1 20.0 1.0
CG A:ASN449 3.2 20.0 1.0
C C:GLN889 3.5 20.0 1.0
CG C:ASP895 3.5 20.0 1.0
C C:ASP892 3.6 20.0 1.0
OD2 C:ASP895 3.7 20.0 1.0
CA C:GLN889 4.0 20.0 1.0
O C:ASP895 4.1 20.0 1.0
CB C:ASP897 4.1 20.0 1.0
CB C:GLN889 4.4 20.0 1.0
N C:GLN893 4.4 20.0 1.0
CA C:GLN893 4.4 20.0 1.0
CA C:ASP892 4.5 20.0 1.0
N C:ASP892 4.5 20.0 1.0
CB A:ASN449 4.6 20.0 1.0
CG C:ASP897 4.6 20.0 1.0
N C:PHE890 4.7 20.0 1.0
C C:ASP895 4.7 20.0 1.0
OD2 C:ASP897 4.8 20.0 1.0
CB C:ASP892 4.8 20.0 1.0
CA C:ASP897 4.8 20.0 1.0
N C:ASP897 4.8 20.0 1.0
CB C:ASP895 4.9 20.0 1.0
C C:GLN893 5.0 20.0 1.0
O A:ASN449 5.0 20.0 1.0
CA C:PHE890 5.0 20.0 1.0

Calcium binding site 4 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 4 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1102

b:20.0
occ:1.00
OD2 C:ASP367 2.3 20.0 1.0
O C:SER533 2.3 20.0 1.0
O C:ARG514 2.4 20.0 1.0
OE2 C:GLU535 2.5 20.0 1.0
OE1 C:GLU535 2.6 20.0 1.0
O C:SER600 2.6 20.0 1.0
CD C:GLU535 2.9 20.0 1.0
C C:SER533 3.4 20.0 1.0
CG C:ASP367 3.4 20.0 1.0
C C:ARG514 3.6 20.0 1.0
C C:SER600 3.8 20.0 1.0
OD1 C:ASP367 3.9 20.0 1.0
CA C:SER533 3.9 20.0 1.0
CB C:SER533 4.1 20.0 1.0
CA C:SER515 4.2 20.0 1.0
OG C:SER600 4.2 20.0 1.0
N C:SER515 4.3 20.0 1.0
CG C:GLU535 4.4 20.0 1.0
N C:ARG514 4.5 20.0 1.0
C C:SER515 4.5 20.0 1.0
N C:ASN534 4.6 20.0 1.0
CA C:SER600 4.6 20.0 1.0
N C:PHE516 4.6 20.0 1.0
CA C:ARG514 4.6 20.0 1.0
CB C:ASP367 4.7 20.0 1.0
N C:ASP601 4.8 20.0 1.0
OG C:SER533 4.9 20.0 1.0
CA C:ASN534 4.9 20.0 1.0
CA C:ASP601 5.0 20.0 1.0
N C:GLU535 5.0 20.0 1.0
CB C:SER600 5.0 20.0 1.0

Calcium binding site 5 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 5 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1102

b:20.0
occ:1.00
O E:SER533 2.4 20.0 1.0
OD2 E:ASP367 2.4 20.0 1.0
O E:ARG514 2.5 20.0 1.0
O E:SER600 2.5 20.0 1.0
OE2 E:GLU535 3.2 20.0 1.0
CD E:GLU535 3.4 20.0 1.0
C E:SER533 3.5 20.0 1.0
CG E:ASP367 3.5 20.0 1.0
C E:SER600 3.6 20.0 1.0
C E:ARG514 3.7 20.0 1.0
OE1 E:GLU535 3.9 20.0 1.0
CG E:GLU535 3.9 20.0 1.0
CA E:SER533 4.1 20.0 1.0
CA E:SER600 4.2 20.0 1.0
CB E:ASP367 4.3 20.0 1.0
CA E:SER515 4.3 20.0 1.0
OD1 E:ASP367 4.4 20.0 1.0
N E:SER515 4.5 20.0 1.0
CB E:SER533 4.5 20.0 1.0
N E:ARG514 4.6 20.0 1.0
N E:ASN534 4.6 20.0 1.0
CB E:SER600 4.6 20.0 1.0
N E:ASP601 4.7 20.0 1.0
CA E:ARG514 4.7 20.0 1.0
CB E:GLU535 4.8 20.0 1.0
CA E:ASN534 4.8 20.0 1.0
C E:SER515 4.9 20.0 1.0
CA E:ASP601 4.9 20.0 1.0
OH E:TYR537 4.9 20.0 1.0
N E:PHE516 5.0 20.0 1.0

Calcium binding site 6 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 6 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1103

b:20.0
occ:1.00
O E:GLN889 2.4 20.0 1.0
O E:ASP892 2.4 20.0 1.0
OD1 E:ASP895 2.4 20.0 1.0
OD1 C:ASN449 2.6 20.0 1.0
CG E:ASP895 3.1 20.0 1.0
OD2 E:ASP895 3.2 20.0 1.0
CG C:ASN449 3.4 20.0 1.0
C E:GLN889 3.5 20.0 1.0
C E:ASP892 3.6 20.0 1.0
ND2 C:ASN449 3.7 20.0 1.0
OD2 E:ASP897 3.9 20.0 1.0
CA E:GLN889 4.0 20.0 1.0
CB E:ASP897 4.0 20.0 1.0
O E:ASP895 4.1 20.0 1.0
CA E:GLN893 4.3 20.0 1.0
N E:GLN893 4.4 20.0 1.0
CB E:GLN889 4.4 20.0 1.0
CG E:ASP897 4.5 20.0 1.0
CA E:ASP892 4.6 20.0 1.0
CB E:ASP895 4.6 20.0 1.0
N E:ASP892 4.6 20.0 1.0
O E:GLN893 4.6 20.0 1.0
N E:PHE890 4.6 20.0 1.0
C E:GLN893 4.6 20.0 1.0
CB C:ASN449 4.7 20.0 1.0
C E:ASP895 4.7 20.0 1.0
N E:ASP895 4.9 20.0 1.0
CB E:ASP892 4.9 20.0 1.0
CA E:PHE890 4.9 20.0 1.0
CA E:ASP897 4.9 20.0 1.0
CA E:ASP895 5.0 20.0 1.0

Calcium binding site 7 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 7 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1104

b:20.0
occ:1.00
O G:GLN889 2.5 20.0 1.0
OD1 E:ASN449 2.5 20.0 1.0
O G:ASP892 2.5 20.0 1.0
ND2 E:ASN449 3.2 20.0 1.0
CG E:ASN449 3.2 20.0 1.0
O G:ASP895 3.3 20.0 1.0
C G:GLN889 3.7 20.0 1.0
CB G:ASP895 3.7 20.0 1.0
C G:ASP892 3.8 20.0 1.0
C G:ASP895 4.0 20.0 1.0
CA G:ASP895 4.2 20.0 1.0
N G:ASP895 4.3 20.0 1.0
O G:GLN893 4.3 20.0 1.0
CA G:GLN889 4.3 20.0 1.0
CB G:ASP897 4.5 20.0 1.0
C G:GLN893 4.5 20.0 1.0
OD2 G:ASP897 4.5 20.0 1.0
CG G:ASP895 4.5 20.0 1.0
CA G:GLN893 4.6 20.0 1.0
CB G:GLN889 4.6 20.0 1.0
N G:GLN893 4.6 20.0 1.0
CB E:ASN449 4.7 20.0 1.0
CG G:ASP897 4.7 20.0 1.0
N G:ASP892 4.7 20.0 1.0
CA G:ASP892 4.7 20.0 1.0
N G:PHE890 4.7 20.0 1.0
OD2 G:ASP895 4.8 20.0 1.0
CA G:PHE890 4.9 20.0 1.0
O E:ASN449 5.0 20.0 1.0

Calcium binding site 8 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 8 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1102

b:20.0
occ:1.00
OE2 G:GLU535 2.5 20.0 1.0
OD2 G:ASP367 2.5 20.0 1.0
O G:SER600 2.5 20.0 1.0
O G:SER533 2.6 20.0 1.0
CD G:GLU535 2.8 20.0 1.0
OE1 G:GLU535 2.9 20.0 1.0
O G:ARG514 3.2 20.0 1.0
C G:SER600 3.2 20.0 1.0
OG G:SER600 3.3 20.0 1.0
CG G:ASP367 3.4 20.0 1.0
CA G:SER600 3.8 20.0 1.0
C G:SER533 3.8 20.0 1.0
CB G:ASP367 3.9 20.0 1.0
CG G:GLU535 4.0 20.0 1.0
N G:ASP601 4.1 20.0 1.0
CB G:SER600 4.1 20.0 1.0
CA G:ASP601 4.3 20.0 1.0
C G:ARG514 4.4 20.0 1.0
OD1 G:ASP367 4.4 20.0 1.0
OH G:TYR537 4.5 20.0 1.0
CA G:SER533 4.6 20.0 1.0
CB G:GLU535 4.7 20.0 1.0
CB G:ASP601 4.8 20.0 1.0
N G:ASN534 4.8 20.0 1.0
CA G:ASN534 4.8 20.0 1.0
CB G:SER533 4.9 20.0 1.0
N G:GLU535 4.9 20.0 1.0
C G:ASN534 5.0 20.0 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Fri Jul 19 06:16:45 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy