Atomistry » Calcium » PDB 7xvv-7yq7 » 7ynz
Atomistry »
  Calcium »
    PDB 7xvv-7yq7 »
      7ynz »

Calcium in PDB 7ynz: Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry

Other elements in 7ynz:

The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry (pdb code 7ynz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry, PDB code: 7ynz:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 1 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:20.0
occ:1.00
OD2 A:ASP367 2.4 20.0 1.0
O A:SER533 2.4 20.0 1.0
OE1 A:GLU535 2.4 20.0 1.0
O A:SER600 2.5 20.0 1.0
OE2 A:GLU535 2.5 20.0 1.0
O A:ARG514 2.5 20.0 1.0
CD A:GLU535 2.8 20.0 1.0
C A:SER533 3.5 20.0 1.0
CG A:ASP367 3.6 20.0 1.0
C A:ARG514 3.7 20.0 1.0
C A:SER600 3.7 20.0 1.0
OG A:SER600 3.9 20.0 1.0
CA A:SER533 4.0 20.0 1.0
OD1 A:ASP367 4.2 20.0 1.0
CB A:SER533 4.2 20.0 1.0
CG A:GLU535 4.3 20.0 1.0
CA A:SER600 4.4 20.0 1.0
CA A:SER515 4.4 20.0 1.0
N A:SER515 4.5 20.0 1.0
N A:ARG514 4.5 20.0 1.0
N A:ASN534 4.6 20.0 1.0
CA A:ARG514 4.7 20.0 1.0
CB A:SER600 4.7 20.0 1.0
CB A:ASP367 4.7 20.0 1.0
N A:ASP601 4.7 20.0 1.0
OH A:TYR537 4.9 20.0 1.0
C A:SER515 4.9 20.0 1.0
CA A:ASP601 4.9 20.0 1.0
N A:GLU535 4.9 20.0 1.0
OG A:SER533 5.0 20.0 1.0
CA A:ASN534 5.0 20.0 1.0
N A:PHE516 5.0 20.0 1.0

Calcium binding site 2 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 2 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1103

b:20.0
occ:1.00
O A:ASP892 2.5 20.0 1.0
O A:GLN889 2.5 20.0 1.0
OD1 A:ASP895 2.5 20.0 1.0
OD1 G:ASN449 2.6 20.0 1.0
CG A:ASP895 3.2 20.0 1.0
OD2 A:ASP895 3.2 20.0 1.0
CG G:ASN449 3.4 20.0 1.0
ND2 G:ASN449 3.5 20.0 1.0
C A:GLN889 3.6 20.0 1.0
C A:ASP892 3.6 20.0 1.0
CB A:ASP897 3.9 20.0 1.0
OD2 A:ASP897 4.0 20.0 1.0
CA A:GLN889 4.1 20.0 1.0
O A:ASP895 4.1 20.0 1.0
CG A:ASP897 4.3 20.0 1.0
CA A:GLN893 4.3 20.0 1.0
N A:GLN893 4.4 20.0 1.0
CB A:GLN889 4.4 20.0 1.0
CB A:ASP895 4.5 20.0 1.0
C A:ASP895 4.6 20.0 1.0
CA A:ASP892 4.6 20.0 1.0
C A:GLN893 4.7 20.0 1.0
O A:GLN893 4.7 20.0 1.0
N A:ASP892 4.7 20.0 1.0
N A:PHE890 4.7 20.0 1.0
CA A:ASP897 4.8 20.0 1.0
N A:ASP897 4.8 20.0 1.0
CB G:ASN449 4.9 20.0 1.0
N A:ASP895 4.9 20.0 1.0
CA A:ASP895 4.9 20.0 1.0
O G:ASN449 4.9 20.0 1.0
CB A:ASP892 4.9 20.0 1.0

Calcium binding site 3 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 3 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1104

b:20.0
occ:1.00
O C:GLN889 2.4 20.0 1.0
O C:ASP892 2.4 20.0 1.0
OD1 A:ASN449 2.5 20.0 1.0
OD1 C:ASP895 2.8 20.0 1.0
ND2 A:ASN449 3.1 20.0 1.0
CG A:ASN449 3.2 20.0 1.0
C C:GLN889 3.5 20.0 1.0
CG C:ASP895 3.5 20.0 1.0
C C:ASP892 3.6 20.0 1.0
OD2 C:ASP895 3.7 20.0 1.0
CA C:GLN889 4.0 20.0 1.0
O C:ASP895 4.1 20.0 1.0
CB C:ASP897 4.1 20.0 1.0
CB C:GLN889 4.4 20.0 1.0
N C:GLN893 4.4 20.0 1.0
CA C:GLN893 4.4 20.0 1.0
CA C:ASP892 4.5 20.0 1.0
N C:ASP892 4.5 20.0 1.0
CB A:ASN449 4.6 20.0 1.0
CG C:ASP897 4.6 20.0 1.0
N C:PHE890 4.7 20.0 1.0
C C:ASP895 4.7 20.0 1.0
OD2 C:ASP897 4.8 20.0 1.0
CB C:ASP892 4.8 20.0 1.0
CA C:ASP897 4.8 20.0 1.0
N C:ASP897 4.8 20.0 1.0
CB C:ASP895 4.9 20.0 1.0
C C:GLN893 5.0 20.0 1.0
O A:ASN449 5.0 20.0 1.0
CA C:PHE890 5.0 20.0 1.0

Calcium binding site 4 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 4 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1102

b:20.0
occ:1.00
OD2 C:ASP367 2.3 20.0 1.0
O C:SER533 2.3 20.0 1.0
O C:ARG514 2.4 20.0 1.0
OE2 C:GLU535 2.5 20.0 1.0
OE1 C:GLU535 2.6 20.0 1.0
O C:SER600 2.6 20.0 1.0
CD C:GLU535 2.9 20.0 1.0
C C:SER533 3.4 20.0 1.0
CG C:ASP367 3.4 20.0 1.0
C C:ARG514 3.6 20.0 1.0
C C:SER600 3.8 20.0 1.0
OD1 C:ASP367 3.9 20.0 1.0
CA C:SER533 3.9 20.0 1.0
CB C:SER533 4.1 20.0 1.0
CA C:SER515 4.2 20.0 1.0
OG C:SER600 4.2 20.0 1.0
N C:SER515 4.3 20.0 1.0
CG C:GLU535 4.4 20.0 1.0
N C:ARG514 4.5 20.0 1.0
C C:SER515 4.5 20.0 1.0
N C:ASN534 4.6 20.0 1.0
CA C:SER600 4.6 20.0 1.0
N C:PHE516 4.6 20.0 1.0
CA C:ARG514 4.6 20.0 1.0
CB C:ASP367 4.7 20.0 1.0
N C:ASP601 4.8 20.0 1.0
OG C:SER533 4.9 20.0 1.0
CA C:ASN534 4.9 20.0 1.0
CA C:ASP601 5.0 20.0 1.0
N C:GLU535 5.0 20.0 1.0
CB C:SER600 5.0 20.0 1.0

Calcium binding site 5 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 5 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1102

b:20.0
occ:1.00
O E:SER533 2.4 20.0 1.0
OD2 E:ASP367 2.4 20.0 1.0
O E:ARG514 2.5 20.0 1.0
O E:SER600 2.5 20.0 1.0
OE2 E:GLU535 3.2 20.0 1.0
CD E:GLU535 3.4 20.0 1.0
C E:SER533 3.5 20.0 1.0
CG E:ASP367 3.5 20.0 1.0
C E:SER600 3.6 20.0 1.0
C E:ARG514 3.7 20.0 1.0
OE1 E:GLU535 3.9 20.0 1.0
CG E:GLU535 3.9 20.0 1.0
CA E:SER533 4.1 20.0 1.0
CA E:SER600 4.2 20.0 1.0
CB E:ASP367 4.3 20.0 1.0
CA E:SER515 4.3 20.0 1.0
OD1 E:ASP367 4.4 20.0 1.0
N E:SER515 4.5 20.0 1.0
CB E:SER533 4.5 20.0 1.0
N E:ARG514 4.6 20.0 1.0
N E:ASN534 4.6 20.0 1.0
CB E:SER600 4.6 20.0 1.0
N E:ASP601 4.7 20.0 1.0
CA E:ARG514 4.7 20.0 1.0
CB E:GLU535 4.8 20.0 1.0
CA E:ASN534 4.8 20.0 1.0
C E:SER515 4.9 20.0 1.0
CA E:ASP601 4.9 20.0 1.0
OH E:TYR537 4.9 20.0 1.0
N E:PHE516 5.0 20.0 1.0

Calcium binding site 6 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 6 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1103

b:20.0
occ:1.00
O E:GLN889 2.4 20.0 1.0
O E:ASP892 2.4 20.0 1.0
OD1 E:ASP895 2.4 20.0 1.0
OD1 C:ASN449 2.6 20.0 1.0
CG E:ASP895 3.1 20.0 1.0
OD2 E:ASP895 3.2 20.0 1.0
CG C:ASN449 3.4 20.0 1.0
C E:GLN889 3.5 20.0 1.0
C E:ASP892 3.6 20.0 1.0
ND2 C:ASN449 3.7 20.0 1.0
OD2 E:ASP897 3.9 20.0 1.0
CA E:GLN889 4.0 20.0 1.0
CB E:ASP897 4.0 20.0 1.0
O E:ASP895 4.1 20.0 1.0
CA E:GLN893 4.3 20.0 1.0
N E:GLN893 4.4 20.0 1.0
CB E:GLN889 4.4 20.0 1.0
CG E:ASP897 4.5 20.0 1.0
CA E:ASP892 4.6 20.0 1.0
CB E:ASP895 4.6 20.0 1.0
N E:ASP892 4.6 20.0 1.0
O E:GLN893 4.6 20.0 1.0
N E:PHE890 4.6 20.0 1.0
C E:GLN893 4.6 20.0 1.0
CB C:ASN449 4.7 20.0 1.0
C E:ASP895 4.7 20.0 1.0
N E:ASP895 4.9 20.0 1.0
CB E:ASP892 4.9 20.0 1.0
CA E:PHE890 4.9 20.0 1.0
CA E:ASP897 4.9 20.0 1.0
CA E:ASP895 5.0 20.0 1.0

Calcium binding site 7 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 7 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca1104

b:20.0
occ:1.00
O G:GLN889 2.5 20.0 1.0
OD1 E:ASN449 2.5 20.0 1.0
O G:ASP892 2.5 20.0 1.0
ND2 E:ASN449 3.2 20.0 1.0
CG E:ASN449 3.2 20.0 1.0
O G:ASP895 3.3 20.0 1.0
C G:GLN889 3.7 20.0 1.0
CB G:ASP895 3.7 20.0 1.0
C G:ASP892 3.8 20.0 1.0
C G:ASP895 4.0 20.0 1.0
CA G:ASP895 4.2 20.0 1.0
N G:ASP895 4.3 20.0 1.0
O G:GLN893 4.3 20.0 1.0
CA G:GLN889 4.3 20.0 1.0
CB G:ASP897 4.5 20.0 1.0
C G:GLN893 4.5 20.0 1.0
OD2 G:ASP897 4.5 20.0 1.0
CG G:ASP895 4.5 20.0 1.0
CA G:GLN893 4.6 20.0 1.0
CB G:GLN889 4.6 20.0 1.0
N G:GLN893 4.6 20.0 1.0
CB E:ASN449 4.7 20.0 1.0
CG G:ASP897 4.7 20.0 1.0
N G:ASP892 4.7 20.0 1.0
CA G:ASP892 4.7 20.0 1.0
N G:PHE890 4.7 20.0 1.0
OD2 G:ASP895 4.8 20.0 1.0
CA G:PHE890 4.9 20.0 1.0
O E:ASN449 5.0 20.0 1.0

Calcium binding site 8 out of 8 in 7ynz

Go back to Calcium Binding Sites List in 7ynz
Calcium binding site 8 out of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca1102

b:20.0
occ:1.00
OE2 G:GLU535 2.5 20.0 1.0
OD2 G:ASP367 2.5 20.0 1.0
O G:SER600 2.5 20.0 1.0
O G:SER533 2.6 20.0 1.0
CD G:GLU535 2.8 20.0 1.0
OE1 G:GLU535 2.9 20.0 1.0
O G:ARG514 3.2 20.0 1.0
C G:SER600 3.2 20.0 1.0
OG G:SER600 3.3 20.0 1.0
CG G:ASP367 3.4 20.0 1.0
CA G:SER600 3.8 20.0 1.0
C G:SER533 3.8 20.0 1.0
CB G:ASP367 3.9 20.0 1.0
CG G:GLU535 4.0 20.0 1.0
N G:ASP601 4.1 20.0 1.0
CB G:SER600 4.1 20.0 1.0
CA G:ASP601 4.3 20.0 1.0
C G:ARG514 4.4 20.0 1.0
OD1 G:ASP367 4.4 20.0 1.0
OH G:TYR537 4.5 20.0 1.0
CA G:SER533 4.6 20.0 1.0
CB G:GLU535 4.7 20.0 1.0
CB G:ASP601 4.8 20.0 1.0
N G:ASN534 4.8 20.0 1.0
CA G:ASN534 4.8 20.0 1.0
CB G:SER533 4.9 20.0 1.0
N G:GLU535 4.9 20.0 1.0
C G:ASN534 5.0 20.0 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Fri Jul 19 06:16:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy