Calcium in PDB 7ynz: Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Other elements in 7ynz:
The structure of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
(pdb code 7ynz). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry, PDB code: 7ynz:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 1 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1102
b:20.0
occ:1.00
|
OD2
|
A:ASP367
|
2.4
|
20.0
|
1.0
|
O
|
A:SER533
|
2.4
|
20.0
|
1.0
|
OE1
|
A:GLU535
|
2.4
|
20.0
|
1.0
|
O
|
A:SER600
|
2.5
|
20.0
|
1.0
|
OE2
|
A:GLU535
|
2.5
|
20.0
|
1.0
|
O
|
A:ARG514
|
2.5
|
20.0
|
1.0
|
CD
|
A:GLU535
|
2.8
|
20.0
|
1.0
|
C
|
A:SER533
|
3.5
|
20.0
|
1.0
|
CG
|
A:ASP367
|
3.6
|
20.0
|
1.0
|
C
|
A:ARG514
|
3.7
|
20.0
|
1.0
|
C
|
A:SER600
|
3.7
|
20.0
|
1.0
|
OG
|
A:SER600
|
3.9
|
20.0
|
1.0
|
CA
|
A:SER533
|
4.0
|
20.0
|
1.0
|
OD1
|
A:ASP367
|
4.2
|
20.0
|
1.0
|
CB
|
A:SER533
|
4.2
|
20.0
|
1.0
|
CG
|
A:GLU535
|
4.3
|
20.0
|
1.0
|
CA
|
A:SER600
|
4.4
|
20.0
|
1.0
|
CA
|
A:SER515
|
4.4
|
20.0
|
1.0
|
N
|
A:SER515
|
4.5
|
20.0
|
1.0
|
N
|
A:ARG514
|
4.5
|
20.0
|
1.0
|
N
|
A:ASN534
|
4.6
|
20.0
|
1.0
|
CA
|
A:ARG514
|
4.7
|
20.0
|
1.0
|
CB
|
A:SER600
|
4.7
|
20.0
|
1.0
|
CB
|
A:ASP367
|
4.7
|
20.0
|
1.0
|
N
|
A:ASP601
|
4.7
|
20.0
|
1.0
|
OH
|
A:TYR537
|
4.9
|
20.0
|
1.0
|
C
|
A:SER515
|
4.9
|
20.0
|
1.0
|
CA
|
A:ASP601
|
4.9
|
20.0
|
1.0
|
N
|
A:GLU535
|
4.9
|
20.0
|
1.0
|
OG
|
A:SER533
|
5.0
|
20.0
|
1.0
|
CA
|
A:ASN534
|
5.0
|
20.0
|
1.0
|
N
|
A:PHE516
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 2 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1103
b:20.0
occ:1.00
|
O
|
A:ASP892
|
2.5
|
20.0
|
1.0
|
O
|
A:GLN889
|
2.5
|
20.0
|
1.0
|
OD1
|
A:ASP895
|
2.5
|
20.0
|
1.0
|
OD1
|
G:ASN449
|
2.6
|
20.0
|
1.0
|
CG
|
A:ASP895
|
3.2
|
20.0
|
1.0
|
OD2
|
A:ASP895
|
3.2
|
20.0
|
1.0
|
CG
|
G:ASN449
|
3.4
|
20.0
|
1.0
|
ND2
|
G:ASN449
|
3.5
|
20.0
|
1.0
|
C
|
A:GLN889
|
3.6
|
20.0
|
1.0
|
C
|
A:ASP892
|
3.6
|
20.0
|
1.0
|
CB
|
A:ASP897
|
3.9
|
20.0
|
1.0
|
OD2
|
A:ASP897
|
4.0
|
20.0
|
1.0
|
CA
|
A:GLN889
|
4.1
|
20.0
|
1.0
|
O
|
A:ASP895
|
4.1
|
20.0
|
1.0
|
CG
|
A:ASP897
|
4.3
|
20.0
|
1.0
|
CA
|
A:GLN893
|
4.3
|
20.0
|
1.0
|
N
|
A:GLN893
|
4.4
|
20.0
|
1.0
|
CB
|
A:GLN889
|
4.4
|
20.0
|
1.0
|
CB
|
A:ASP895
|
4.5
|
20.0
|
1.0
|
C
|
A:ASP895
|
4.6
|
20.0
|
1.0
|
CA
|
A:ASP892
|
4.6
|
20.0
|
1.0
|
C
|
A:GLN893
|
4.7
|
20.0
|
1.0
|
O
|
A:GLN893
|
4.7
|
20.0
|
1.0
|
N
|
A:ASP892
|
4.7
|
20.0
|
1.0
|
N
|
A:PHE890
|
4.7
|
20.0
|
1.0
|
CA
|
A:ASP897
|
4.8
|
20.0
|
1.0
|
N
|
A:ASP897
|
4.8
|
20.0
|
1.0
|
CB
|
G:ASN449
|
4.9
|
20.0
|
1.0
|
N
|
A:ASP895
|
4.9
|
20.0
|
1.0
|
CA
|
A:ASP895
|
4.9
|
20.0
|
1.0
|
O
|
G:ASN449
|
4.9
|
20.0
|
1.0
|
CB
|
A:ASP892
|
4.9
|
20.0
|
1.0
|
|
Calcium binding site 3 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 3 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1104
b:20.0
occ:1.00
|
O
|
C:GLN889
|
2.4
|
20.0
|
1.0
|
O
|
C:ASP892
|
2.4
|
20.0
|
1.0
|
OD1
|
A:ASN449
|
2.5
|
20.0
|
1.0
|
OD1
|
C:ASP895
|
2.8
|
20.0
|
1.0
|
ND2
|
A:ASN449
|
3.1
|
20.0
|
1.0
|
CG
|
A:ASN449
|
3.2
|
20.0
|
1.0
|
C
|
C:GLN889
|
3.5
|
20.0
|
1.0
|
CG
|
C:ASP895
|
3.5
|
20.0
|
1.0
|
C
|
C:ASP892
|
3.6
|
20.0
|
1.0
|
OD2
|
C:ASP895
|
3.7
|
20.0
|
1.0
|
CA
|
C:GLN889
|
4.0
|
20.0
|
1.0
|
O
|
C:ASP895
|
4.1
|
20.0
|
1.0
|
CB
|
C:ASP897
|
4.1
|
20.0
|
1.0
|
CB
|
C:GLN889
|
4.4
|
20.0
|
1.0
|
N
|
C:GLN893
|
4.4
|
20.0
|
1.0
|
CA
|
C:GLN893
|
4.4
|
20.0
|
1.0
|
CA
|
C:ASP892
|
4.5
|
20.0
|
1.0
|
N
|
C:ASP892
|
4.5
|
20.0
|
1.0
|
CB
|
A:ASN449
|
4.6
|
20.0
|
1.0
|
CG
|
C:ASP897
|
4.6
|
20.0
|
1.0
|
N
|
C:PHE890
|
4.7
|
20.0
|
1.0
|
C
|
C:ASP895
|
4.7
|
20.0
|
1.0
|
OD2
|
C:ASP897
|
4.8
|
20.0
|
1.0
|
CB
|
C:ASP892
|
4.8
|
20.0
|
1.0
|
CA
|
C:ASP897
|
4.8
|
20.0
|
1.0
|
N
|
C:ASP897
|
4.8
|
20.0
|
1.0
|
CB
|
C:ASP895
|
4.9
|
20.0
|
1.0
|
C
|
C:GLN893
|
5.0
|
20.0
|
1.0
|
O
|
A:ASN449
|
5.0
|
20.0
|
1.0
|
CA
|
C:PHE890
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 4 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 4 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1102
b:20.0
occ:1.00
|
OD2
|
C:ASP367
|
2.3
|
20.0
|
1.0
|
O
|
C:SER533
|
2.3
|
20.0
|
1.0
|
O
|
C:ARG514
|
2.4
|
20.0
|
1.0
|
OE2
|
C:GLU535
|
2.5
|
20.0
|
1.0
|
OE1
|
C:GLU535
|
2.6
|
20.0
|
1.0
|
O
|
C:SER600
|
2.6
|
20.0
|
1.0
|
CD
|
C:GLU535
|
2.9
|
20.0
|
1.0
|
C
|
C:SER533
|
3.4
|
20.0
|
1.0
|
CG
|
C:ASP367
|
3.4
|
20.0
|
1.0
|
C
|
C:ARG514
|
3.6
|
20.0
|
1.0
|
C
|
C:SER600
|
3.8
|
20.0
|
1.0
|
OD1
|
C:ASP367
|
3.9
|
20.0
|
1.0
|
CA
|
C:SER533
|
3.9
|
20.0
|
1.0
|
CB
|
C:SER533
|
4.1
|
20.0
|
1.0
|
CA
|
C:SER515
|
4.2
|
20.0
|
1.0
|
OG
|
C:SER600
|
4.2
|
20.0
|
1.0
|
N
|
C:SER515
|
4.3
|
20.0
|
1.0
|
CG
|
C:GLU535
|
4.4
|
20.0
|
1.0
|
N
|
C:ARG514
|
4.5
|
20.0
|
1.0
|
C
|
C:SER515
|
4.5
|
20.0
|
1.0
|
N
|
C:ASN534
|
4.6
|
20.0
|
1.0
|
CA
|
C:SER600
|
4.6
|
20.0
|
1.0
|
N
|
C:PHE516
|
4.6
|
20.0
|
1.0
|
CA
|
C:ARG514
|
4.6
|
20.0
|
1.0
|
CB
|
C:ASP367
|
4.7
|
20.0
|
1.0
|
N
|
C:ASP601
|
4.8
|
20.0
|
1.0
|
OG
|
C:SER533
|
4.9
|
20.0
|
1.0
|
CA
|
C:ASN534
|
4.9
|
20.0
|
1.0
|
CA
|
C:ASP601
|
5.0
|
20.0
|
1.0
|
N
|
C:GLU535
|
5.0
|
20.0
|
1.0
|
CB
|
C:SER600
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 5 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 5 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1102
b:20.0
occ:1.00
|
O
|
E:SER533
|
2.4
|
20.0
|
1.0
|
OD2
|
E:ASP367
|
2.4
|
20.0
|
1.0
|
O
|
E:ARG514
|
2.5
|
20.0
|
1.0
|
O
|
E:SER600
|
2.5
|
20.0
|
1.0
|
OE2
|
E:GLU535
|
3.2
|
20.0
|
1.0
|
CD
|
E:GLU535
|
3.4
|
20.0
|
1.0
|
C
|
E:SER533
|
3.5
|
20.0
|
1.0
|
CG
|
E:ASP367
|
3.5
|
20.0
|
1.0
|
C
|
E:SER600
|
3.6
|
20.0
|
1.0
|
C
|
E:ARG514
|
3.7
|
20.0
|
1.0
|
OE1
|
E:GLU535
|
3.9
|
20.0
|
1.0
|
CG
|
E:GLU535
|
3.9
|
20.0
|
1.0
|
CA
|
E:SER533
|
4.1
|
20.0
|
1.0
|
CA
|
E:SER600
|
4.2
|
20.0
|
1.0
|
CB
|
E:ASP367
|
4.3
|
20.0
|
1.0
|
CA
|
E:SER515
|
4.3
|
20.0
|
1.0
|
OD1
|
E:ASP367
|
4.4
|
20.0
|
1.0
|
N
|
E:SER515
|
4.5
|
20.0
|
1.0
|
CB
|
E:SER533
|
4.5
|
20.0
|
1.0
|
N
|
E:ARG514
|
4.6
|
20.0
|
1.0
|
N
|
E:ASN534
|
4.6
|
20.0
|
1.0
|
CB
|
E:SER600
|
4.6
|
20.0
|
1.0
|
N
|
E:ASP601
|
4.7
|
20.0
|
1.0
|
CA
|
E:ARG514
|
4.7
|
20.0
|
1.0
|
CB
|
E:GLU535
|
4.8
|
20.0
|
1.0
|
CA
|
E:ASN534
|
4.8
|
20.0
|
1.0
|
C
|
E:SER515
|
4.9
|
20.0
|
1.0
|
CA
|
E:ASP601
|
4.9
|
20.0
|
1.0
|
OH
|
E:TYR537
|
4.9
|
20.0
|
1.0
|
N
|
E:PHE516
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 6 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1103
b:20.0
occ:1.00
|
O
|
E:GLN889
|
2.4
|
20.0
|
1.0
|
O
|
E:ASP892
|
2.4
|
20.0
|
1.0
|
OD1
|
E:ASP895
|
2.4
|
20.0
|
1.0
|
OD1
|
C:ASN449
|
2.6
|
20.0
|
1.0
|
CG
|
E:ASP895
|
3.1
|
20.0
|
1.0
|
OD2
|
E:ASP895
|
3.2
|
20.0
|
1.0
|
CG
|
C:ASN449
|
3.4
|
20.0
|
1.0
|
C
|
E:GLN889
|
3.5
|
20.0
|
1.0
|
C
|
E:ASP892
|
3.6
|
20.0
|
1.0
|
ND2
|
C:ASN449
|
3.7
|
20.0
|
1.0
|
OD2
|
E:ASP897
|
3.9
|
20.0
|
1.0
|
CA
|
E:GLN889
|
4.0
|
20.0
|
1.0
|
CB
|
E:ASP897
|
4.0
|
20.0
|
1.0
|
O
|
E:ASP895
|
4.1
|
20.0
|
1.0
|
CA
|
E:GLN893
|
4.3
|
20.0
|
1.0
|
N
|
E:GLN893
|
4.4
|
20.0
|
1.0
|
CB
|
E:GLN889
|
4.4
|
20.0
|
1.0
|
CG
|
E:ASP897
|
4.5
|
20.0
|
1.0
|
CA
|
E:ASP892
|
4.6
|
20.0
|
1.0
|
CB
|
E:ASP895
|
4.6
|
20.0
|
1.0
|
N
|
E:ASP892
|
4.6
|
20.0
|
1.0
|
O
|
E:GLN893
|
4.6
|
20.0
|
1.0
|
N
|
E:PHE890
|
4.6
|
20.0
|
1.0
|
C
|
E:GLN893
|
4.6
|
20.0
|
1.0
|
CB
|
C:ASN449
|
4.7
|
20.0
|
1.0
|
C
|
E:ASP895
|
4.7
|
20.0
|
1.0
|
N
|
E:ASP895
|
4.9
|
20.0
|
1.0
|
CB
|
E:ASP892
|
4.9
|
20.0
|
1.0
|
CA
|
E:PHE890
|
4.9
|
20.0
|
1.0
|
CA
|
E:ASP897
|
4.9
|
20.0
|
1.0
|
CA
|
E:ASP895
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 7 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 7 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1104
b:20.0
occ:1.00
|
O
|
G:GLN889
|
2.5
|
20.0
|
1.0
|
OD1
|
E:ASN449
|
2.5
|
20.0
|
1.0
|
O
|
G:ASP892
|
2.5
|
20.0
|
1.0
|
ND2
|
E:ASN449
|
3.2
|
20.0
|
1.0
|
CG
|
E:ASN449
|
3.2
|
20.0
|
1.0
|
O
|
G:ASP895
|
3.3
|
20.0
|
1.0
|
C
|
G:GLN889
|
3.7
|
20.0
|
1.0
|
CB
|
G:ASP895
|
3.7
|
20.0
|
1.0
|
C
|
G:ASP892
|
3.8
|
20.0
|
1.0
|
C
|
G:ASP895
|
4.0
|
20.0
|
1.0
|
CA
|
G:ASP895
|
4.2
|
20.0
|
1.0
|
N
|
G:ASP895
|
4.3
|
20.0
|
1.0
|
O
|
G:GLN893
|
4.3
|
20.0
|
1.0
|
CA
|
G:GLN889
|
4.3
|
20.0
|
1.0
|
CB
|
G:ASP897
|
4.5
|
20.0
|
1.0
|
C
|
G:GLN893
|
4.5
|
20.0
|
1.0
|
OD2
|
G:ASP897
|
4.5
|
20.0
|
1.0
|
CG
|
G:ASP895
|
4.5
|
20.0
|
1.0
|
CA
|
G:GLN893
|
4.6
|
20.0
|
1.0
|
CB
|
G:GLN889
|
4.6
|
20.0
|
1.0
|
N
|
G:GLN893
|
4.6
|
20.0
|
1.0
|
CB
|
E:ASN449
|
4.7
|
20.0
|
1.0
|
CG
|
G:ASP897
|
4.7
|
20.0
|
1.0
|
N
|
G:ASP892
|
4.7
|
20.0
|
1.0
|
CA
|
G:ASP892
|
4.7
|
20.0
|
1.0
|
N
|
G:PHE890
|
4.7
|
20.0
|
1.0
|
OD2
|
G:ASP895
|
4.8
|
20.0
|
1.0
|
CA
|
G:PHE890
|
4.9
|
20.0
|
1.0
|
O
|
E:ASN449
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 8 out
of 8 in 7ynz
Go back to
Calcium Binding Sites List in 7ynz
Calcium binding site 8 out
of 8 in the Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Cryo-Em Structure of Human SLO1-LRRC26 Complex with C1 Symmetry within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca1102
b:20.0
occ:1.00
|
OE2
|
G:GLU535
|
2.5
|
20.0
|
1.0
|
OD2
|
G:ASP367
|
2.5
|
20.0
|
1.0
|
O
|
G:SER600
|
2.5
|
20.0
|
1.0
|
O
|
G:SER533
|
2.6
|
20.0
|
1.0
|
CD
|
G:GLU535
|
2.8
|
20.0
|
1.0
|
OE1
|
G:GLU535
|
2.9
|
20.0
|
1.0
|
O
|
G:ARG514
|
3.2
|
20.0
|
1.0
|
C
|
G:SER600
|
3.2
|
20.0
|
1.0
|
OG
|
G:SER600
|
3.3
|
20.0
|
1.0
|
CG
|
G:ASP367
|
3.4
|
20.0
|
1.0
|
CA
|
G:SER600
|
3.8
|
20.0
|
1.0
|
C
|
G:SER533
|
3.8
|
20.0
|
1.0
|
CB
|
G:ASP367
|
3.9
|
20.0
|
1.0
|
CG
|
G:GLU535
|
4.0
|
20.0
|
1.0
|
N
|
G:ASP601
|
4.1
|
20.0
|
1.0
|
CB
|
G:SER600
|
4.1
|
20.0
|
1.0
|
CA
|
G:ASP601
|
4.3
|
20.0
|
1.0
|
C
|
G:ARG514
|
4.4
|
20.0
|
1.0
|
OD1
|
G:ASP367
|
4.4
|
20.0
|
1.0
|
OH
|
G:TYR537
|
4.5
|
20.0
|
1.0
|
CA
|
G:SER533
|
4.6
|
20.0
|
1.0
|
CB
|
G:GLU535
|
4.7
|
20.0
|
1.0
|
CB
|
G:ASP601
|
4.8
|
20.0
|
1.0
|
N
|
G:ASN534
|
4.8
|
20.0
|
1.0
|
CA
|
G:ASN534
|
4.8
|
20.0
|
1.0
|
CB
|
G:SER533
|
4.9
|
20.0
|
1.0
|
N
|
G:GLU535
|
4.9
|
20.0
|
1.0
|
C
|
G:ASN534
|
5.0
|
20.0
|
1.0
|
|
Reference:
D.Yamanouchi,
D.Yamanouchi,
O.Nureki.
N/A N/A.
Page generated: Fri Jul 19 06:16:45 2024
|