Calcium in PDB 7yo1: Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex

The structure of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex (pdb code 7yo1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex, PDB code: 7yo1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1102 b:62.7 occ:1.00 O A:SER600 2.6 52.3 1.0 O A:SER533 2.6 42.8 1.0 O A:ARG514 2.9 52.9 1.0 C A:SER600 3.5 52.3 1.0 C A:SER533 3.7 42.8 1.0 CG A:GLU535 3.8 39.1 1.0 CA A:SER600 3.9 52.3 1.0 C A:ARG514 4.1 52.9 1.0 CA A:SER533 4.2 42.8 1.0 OE2 A:GLU535 4.3 39.1 1.0 CB A:SER600 4.3 52.3 1.0 CB A:SER533 4.4 42.8 1.0 CD A:GLU535 4.6 39.1 1.0 CA A:SER515 4.6 64.4 1.0 N A:ASP601 4.7 59.1 1.0 N A:SER515 4.8 64.4 1.0 N A:ASN534 4.8 39.1 1.0 OG A:SER600 4.8 52.3 1.0 OH A:TYR537 4.9 39.4 1.0 C A:SER515 4.9 64.4 1.0 CB A:GLU535 4.9 39.1 1.0

Calcium binding site 2 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1103 b:42.6 occ:1.00 O A:ASP892 2.4 39.0 1.0 OD2 A:ASP897 2.4 54.2 1.0 OD1 A:ASP897 2.4 54.2 1.0 OD1 G:ASN449 2.5 30.0 1.0 OD1 A:ASP895 2.5 52.8 1.0 O A:GLN889 2.5 37.4 1.0 CG A:ASP897 2.7 54.2 1.0 ND2 G:ASN449 3.1 30.0 1.0 CG G:ASN449 3.2 30.0 1.0 CG A:ASP895 3.4 52.8 1.0 C A:ASP892 3.5 39.0 1.0 O A:ASP895 3.7 52.8 1.0 OD2 A:ASP895 3.7 52.8 1.0 C A:GLN889 3.7 37.4 1.0 CA A:GLN893 4.2 48.0 1.0 CB A:ASP897 4.3 54.2 1.0 N A:GLN893 4.3 48.0 1.0 CA A:GLN889 4.4 37.4 1.0 C A:ASP895 4.5 52.8 1.0 CA A:ASP892 4.6 39.0 1.0 N A:ASP895 4.6 52.8 1.0 C A:GLN893 4.6 48.0 1.0 N A:ASP892 4.6 39.0 1.0 CB G:ASN449 4.7 30.0 1.0 CB A:ASP895 4.7 52.8 1.0 N A:PHE890 4.8 33.0 1.0 CB A:GLN889 4.8 37.4 1.0 N A:ASP897 4.9 54.2 1.0 CA A:ASP895 4.9 52.8 1.0 O G:ASN449 4.9 30.0 1.0 CB A:ASP892 5.0 39.0 1.0 CA A:PHE890 5.0 33.0 1.0 N A:ASP894 5.0 55.4 1.0

Calcium binding site 3 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1102 b:51.5 occ:1.00 O C:SER600 2.5 50.0 1.0 OE2 C:GLU535 2.6 44.5 1.0 O C:SER533 2.6 46.0 1.0 CD C:GLU535 2.8 44.5 1.0 OE1 C:GLU535 2.8 44.5 1.0 O C:ARG514 3.4 59.0 1.0 C C:SER600 3.7 50.0 1.0 C C:SER533 3.8 46.0 1.0 CG C:GLU535 3.9 44.5 1.0 C C:ARG514 4.2 59.0 1.0 CA C:SER600 4.3 50.0 1.0 OG C:SER533 4.3 46.0 1.0 CB C:GLU535 4.3 44.5 1.0 OH C:TYR537 4.5 42.0 1.0 CA C:SER533 4.6 46.0 1.0 C C:ASN534 4.6 41.9 1.0 N C:ARG514 4.7 59.0 1.0 OD1 C:ASP601 4.7 55.7 1.0 N C:ASP601 4.7 55.7 1.0 N C:ASN534 4.8 41.9 1.0 CA C:ASN534 4.8 41.9 1.0 N C:GLU535 4.8 44.5 1.0 O C:ASN534 4.9 41.9 1.0 O C:ALA599 4.9 40.2 1.0 N C:SER515 5.0 71.0 1.0 CB C:SER600 5.0 50.0 1.0

Calcium binding site 4 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1103 b:52.7 occ:1.00 O C:ASP892 2.3 42.6 1.0 OD2 C:ASP897 2.4 60.7 1.0 OD1 C:ASP897 2.4 60.7 1.0 OD1 C:ASP895 2.4 54.9 1.0 OD1 A:ASN449 2.4 31.5 1.0 O C:GLN889 2.4 37.4 1.0 CG C:ASP897 2.7 60.7 1.0 CG A:ASN449 3.1 31.5 1.0 ND2 A:ASN449 3.2 31.5 1.0 CG C:ASP895 3.4 54.9 1.0 C C:ASP892 3.5 42.6 1.0 C C:GLN889 3.6 37.4 1.0 OD2 C:ASP895 3.7 54.9 1.0 CA C:GLN893 4.2 50.9 1.0 CB C:ASP897 4.2 60.7 1.0 O C:ASP895 4.3 54.9 1.0 N C:GLN893 4.3 50.9 1.0 CA C:GLN889 4.4 37.4 1.0 N C:ASP895 4.5 54.9 1.0 C C:GLN893 4.5 50.9 1.0 CB A:ASN449 4.6 31.5 1.0 CA C:ASP892 4.6 42.6 1.0 N C:ASP892 4.7 42.6 1.0 N C:PHE890 4.7 33.3 1.0 CB C:GLN889 4.7 37.4 1.0 CB C:ASP895 4.7 54.9 1.0 C C:ASP895 4.8 54.9 1.0 N C:ASP894 4.8 51.0 1.0 CA C:PHE890 4.8 33.3 1.0 O A:ASN449 4.9 31.5 1.0 CA C:ASP895 4.9 54.9 1.0 N C:ASP897 5.0 60.7 1.0

Calcium binding site 5 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1102 b:58.6 occ:1.00 O E:SER600 2.5 52.4 1.0 O E:SER533 2.7 45.1 1.0 OE2 E:GLU535 2.7 43.1 1.0 CD E:GLU535 3.0 43.1 1.0 O E:ARG514 3.4 64.9 1.0 OE1 E:GLU535 3.5 43.1 1.0 C E:SER600 3.6 52.4 1.0 CG E:GLU535 3.7 43.1 1.0 C E:SER533 3.8 45.1 1.0 C E:ARG514 4.0 64.9 1.0 CA E:SER515 4.1 76.1 1.0 OD1 E:ASP601 4.1 60.0 1.0 CA E:SER600 4.1 52.4 1.0 N E:SER515 4.3 76.1 1.0 C E:SER515 4.4 76.1 1.0 CA E:SER533 4.4 45.1 1.0 O E:SER515 4.6 76.1 1.0 CB E:SER600 4.7 52.4 1.0 CB E:GLU535 4.7 43.1 1.0 N E:ASP601 4.7 60.0 1.0 CB E:SER533 4.8 45.1 1.0 N E:ASN534 4.9 42.7 1.0 C E:ASN534 5.0 42.7 1.0 OH E:TYR537 5.0 41.2 1.0 N E:ARG514 5.0 64.9 1.0 N E:PHE516 5.0 84.7 1.0

Calcium binding site 6 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1103 b:39.4 occ:1.00 O E:ASP892 2.4 38.2 1.0 OD2 E:ASP897 2.4 52.7 1.0 OD1 E:ASP897 2.4 52.7 1.0 OD1 C:ASN449 2.5 26.6 1.0 O E:GLN889 2.6 34.8 1.0 OD1 E:ASP895 2.7 54.2 1.0 CG E:ASP897 2.8 52.7 1.0 O E:ASP895 3.3 54.2 1.0 CG C:ASN449 3.3 26.6 1.0 ND2 C:ASN449 3.4 26.6 1.0 C E:ASP892 3.5 38.2 1.0 CG E:ASP895 3.7 54.2 1.0 C E:GLN889 3.7 34.8 1.0 CA E:GLN893 4.0 50.7 1.0 OD2 E:ASP895 4.2 54.2 1.0 N E:GLN893 4.2 50.7 1.0 C E:ASP895 4.3 54.2 1.0 CB E:ASP897 4.3 52.7 1.0 CA E:GLN889 4.3 34.8 1.0 C E:GLN893 4.3 50.7 1.0 N E:ASP895 4.5 54.2 1.0 CB E:GLN889 4.6 34.8 1.0 N E:ASP894 4.7 57.5 1.0 CA E:ASP892 4.7 38.2 1.0 CB C:ASN449 4.7 26.6 1.0 CA E:ASP895 4.8 54.2 1.0 N E:PHE890 4.8 30.6 1.0 O E:GLN893 4.8 50.7 1.0 CB E:ASP895 4.9 54.2 1.0 N E:ASP892 4.9 38.2 1.0 N E:ASP897 4.9 52.7 1.0 O C:ASN449 4.9 26.6 1.0 CA E:ASP897 5.0 52.7 1.0

Calcium binding site 7 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1104 b:48.4 occ:1.00 O G:GLN889 2.5 37.7 1.0 OD1 G:ASP895 2.5 53.9 1.0 O G:ASP892 2.5 40.1 1.0 OD1 E:ASN449 2.7 31.9 1.0 ND2 E:ASN449 3.2 31.9 1.0 CG E:ASN449 3.3 31.9 1.0 CG G:ASP895 3.5 53.9 1.0 C G:GLN889 3.7 37.7 1.0 C G:ASP892 3.8 40.1 1.0 CB G:ASP897 3.8 62.3 1.0 O G:ASP895 3.8 53.9 1.0 OD2 G:ASP895 3.9 53.9 1.0 CA G:GLN889 4.3 37.7 1.0 N G:ASP897 4.4 62.3 1.0 CG G:ASP897 4.4 62.3 1.0 CA G:GLN893 4.5 44.7 1.0 C G:ASP895 4.5 53.9 1.0 CA G:ASP897 4.5 62.3 1.0 OD2 G:ASP897 4.5 62.3 1.0 CB G:GLN889 4.6 37.7 1.0 N G:GLN893 4.6 44.7 1.0 N G:ASP895 4.7 53.9 1.0 N G:PHE890 4.7 33.7 1.0 CB G:ASP895 4.8 53.9 1.0 CA G:ASP892 4.8 40.1 1.0 C G:GLN893 4.8 44.7 1.0 N G:ASP892 4.8 40.1 1.0 CB E:ASN449 4.8 31.9 1.0 CA G:ASP895 4.9 53.9 1.0 O E:ASN449 5.0 31.9 1.0

Calcium binding site 8 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of RCK1 Mutated Human SLO1-LRRC26 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca1102 b:45.4 occ:1.00 O G:SER512 2.5 34.4 1.0 O G:ASN509 2.5 27.5 1.0 O G:VAL532 2.8 40.9 1.0 O G:ASN534 3.4 42.4 1.0 C G:SER512 3.8 34.4 1.0 C G:ASN509 3.8 27.5 1.0 CG G:GLU535 3.8 41.9 1.0 CB G:ARG514 3.9 51.0 1.0 C G:ASN534 4.0 42.4 1.0 C G:VAL532 4.0 40.9 1.0 N G:ARG514 4.0 51.0 1.0 CD G:GLU535 4.3 41.9 1.0 N G:ASN534 4.3 42.4 1.0 OE1 G:GLU535 4.4 41.9 1.0 CG2 G:VAL532 4.5 40.9 1.0 O G:LEU510 4.5 29.6 1.0 N G:GLU535 4.5 41.9 1.0 CA G:ARG514 4.5 51.0 1.0 C G:MET513 4.6 52.5 1.0 CA G:ASN509 4.6 27.5 1.0 N G:SER512 4.6 34.4 1.0 C G:SER533 4.6 46.2 1.0 CA G:SER512 4.6 34.4 1.0 CA G:GLU535 4.6 41.9 1.0 N G:LEU510 4.7 29.6 1.0 CA G:LEU510 4.7 29.6 1.0 N G:MET513 4.7 52.5 1.0 C G:LEU510 4.7 29.6 1.0 CA G:MET513 4.7 52.5 1.0 CA G:SER533 4.8 46.2 1.0 CB G:GLU535 4.8 41.9 1.0 CA G:ASN534 4.8 42.4 1.0 CB G:SER512 4.9 34.4 1.0 N G:SER533 4.9 46.2 1.0 NE G:ARG514 4.9 51.0 1.0 CB G:ASN509 4.9 27.5 1.0 CA G:VAL532 4.9 40.9 1.0 OE2 G:GLU535 5.0 41.9 1.0

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.