Calcium in PDB 7yyg: Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn

Protein crystallography data

The structure of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn, PDB code: 7yyg was solved by T.Prudnikova, I.Kuta Smatanova, J.Kamanova, L.Bumba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.93 / 1.95
Space group P 42 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.859, 84.859, 102.565, 90, 90, 90
R / Rfree (%) 18 / 20.7

Other elements in 7yyg:

The structure of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn also contains other interesting chemical elements:

Sodium (Na) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn (pdb code 7yyg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn, PDB code: 7yyg:

Calcium binding site 1 out of 1 in 7yyg

Go back to Calcium Binding Sites List in 7yyg
Calcium binding site 1 out of 1 in the Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Gatekeeper of Type III Secretion System in Bordetella Bopn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:37.8
occ:1.00
OD2 A:ASP142 2.4 47.6 1.0
CG A:ASP142 3.5 60.6 1.0
O2 A:GOL404 3.9 50.9 1.0
CB A:ASP142 4.2 55.1 1.0
OD1 A:ASP142 4.5 60.5 1.0
O1 A:GOL404 4.9 49.2 1.0

Reference:

K.Navarette, T.Romero Allsop, I.Malcova, T.Prudnikova, I.Kuta Smatanova, L.Bumba, J.Kamanova. Bopn Functions As A Gatekeeper in Bordetella Type III Secretion System To Be Published.
Page generated: Tue Apr 4 19:17:59 2023

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