Calcium in PDB 7z1i: Plant Myrosinase TGG1 From Arabidopsis Thaliana

All present enzymatic activity of Plant Myrosinase TGG1 From Arabidopsis Thaliana:
3.2.1.147; 3.2.1.21;

The structure of Plant Myrosinase TGG1 From Arabidopsis Thaliana, PDB code: 7z1i was solved by Y.Gao, E.Farmer, P.Jimenez-Sandoval, J.Santiago, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.52 / 3.09
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	70.989, 88.989, 120.982, 108.79, 92.87, 102.97
R / Rfree (%)	31.7 / 34.1

The binding sites of Calcium atom in the Plant Myrosinase TGG1 From Arabidopsis Thaliana (pdb code 7z1i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Plant Myrosinase TGG1 From Arabidopsis Thaliana, PDB code: 7z1i:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Plant Myrosinase TGG1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Plant Myrosinase TGG1 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca608 b:35.2 occ:1.00 OD2 A:ASP88 2.1 76.2 1.0 OD2 B:ASP88 2.1 87.7 1.0 NE2 B:HIS74 2.2 98.5 1.0 NE2 A:HIS74 2.2 90.5 1.0 CG A:ASP88 3.1 75.6 1.0 CE1 B:HIS74 3.1 101.0 1.0 CG B:ASP88 3.1 88.8 1.0 CE1 A:HIS74 3.2 98.1 1.0 CD2 A:HIS74 3.2 93.6 1.0 CD2 B:HIS74 3.3 95.9 1.0 OD1 A:ASP88 3.4 72.2 1.0 OD1 B:ASP88 3.5 88.9 1.0 ND2 A:ASN86 3.6 80.5 1.0 ND2 B:ASN86 3.9 92.0 1.0 ND1 B:HIS74 4.3 97.8 1.0 ND1 A:HIS74 4.3 102.3 1.0 CG A:HIS74 4.3 93.2 1.0 CB A:ASP88 4.4 76.7 1.0 CG B:HIS74 4.4 95.5 1.0 CB B:ASP88 4.4 90.1 1.0 CG A:ASN86 4.8 75.6 1.0

Calcium binding site 2 out of 2 in the Plant Myrosinase TGG1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Plant Myrosinase TGG1 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca606 b:124.2 occ:1.00 OD2 D:ASP88 2.2 127.7 1.0 NE2 D:HIS74 2.4 125.9 1.0 ND2 D:ASN86 2.9 145.1 1.0 CD2 D:HIS74 3.1 135.9 1.0 CG D:ASP88 3.4 136.9 1.0 CE1 D:HIS74 3.5 132.5 1.0 CG D:ASN86 4.1 145.1 1.0 OD1 D:ASP88 4.1 134.6 1.0 CG D:HIS74 4.3 141.5 1.0 CB D:ASP88 4.4 139.8 1.0 ND1 D:HIS74 4.5 140.2 1.0 OD1 D:ASN86 4.5 147.2 1.0

Y.Gao, E.Farmer, P.Jimenez-Sandoval, J.Santiago. Plant Myrosinase TGG1 From Arabidopsis Thaliana To Be Published.