Calcium in PDB 7zgv: Serratia Nucc Bound to CA3

The structure of Serratia Nucc Bound to CA3, PDB code: 7zgv was solved by C.Garcia-Doval, D.Mayo-Munoz, L.M.Smith, P.C.Fineran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.85 / 1.48
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	114.265, 114.265, 96.069, 90, 90, 120
R / Rfree (%)	15.8 / 18.1

The binding sites of Calcium atom in the Serratia Nucc Bound to CA3 (pdb code 7zgv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Serratia Nucc Bound to CA3, PDB code: 7zgv:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Serratia Nucc Bound to CA3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Serratia Nucc Bound to CA3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:12.6 occ:1.00 O A:VAL115 2.3 12.9 1.0 OD2 A:ASP83 2.4 12.2 1.0 O A:HOH417 2.4 17.6 1.0 OE2 A:GLU46 2.5 20.8 1.0 O A:ACT304 2.5 18.6 1.0 OXT A:ACT304 2.5 19.8 1.0 OE2 A:GLU114 2.6 21.9 1.0 C A:ACT304 2.7 25.8 1.0 CG A:ASP83 3.3 16.7 1.0 HG2 A:GLU46 3.4 31.6 1.0 OD1 A:ASP83 3.5 20.2 1.0 C A:VAL115 3.5 13.9 1.0 H A:VAL115 3.5 13.4 1.0 CD A:GLU46 3.5 38.4 1.0 CD A:GLU114 3.6 24.0 1.0 HB A:VAL115 3.6 16.3 1.0 HZ2 A:LYS116 3.8 30.9 1.0 HD3 A:LYS116 3.8 31.1 1.0 CG A:GLU46 4.0 26.4 1.0 N A:VAL115 4.1 11.2 1.0 HB3 A:GLU46 4.1 29.5 1.0 OE1 A:GLU114 4.2 22.4 1.0 CA A:VAL115 4.2 13.4 1.0 HA A:LYS116 4.2 16.7 1.0 HG3 A:GLU114 4.2 26.9 1.0 CH3 A:ACT304 4.3 30.4 1.0 HB A:VAL47 4.3 19.1 1.0 CB A:VAL115 4.3 13.6 1.0 H A:VAL47 4.4 19.2 1.0 HE2 A:LYS116 4.5 28.5 1.0 HG2 A:LYS116 4.5 28.9 1.0 HG12 A:VAL115 4.5 19.8 1.0 CG A:GLU114 4.6 22.4 1.0 N A:LYS116 4.6 12.2 1.0 NZ A:LYS116 4.6 25.8 1.0 CB A:GLU46 4.6 24.6 1.0 CD A:LYS116 4.6 26.0 1.0 H3 A:ACT304 4.6 36.5 1.0 O A:HOH588 4.7 31.7 1.0 CB A:ASP83 4.7 13.7 1.0 H2 A:ACT304 4.7 36.5 1.0 O A:VAL47 4.7 14.2 1.0 OE1 A:GLU46 4.7 21.4 1.0 H1 A:ACT304 4.7 36.5 1.0 HG3 A:GLU46 4.8 31.6 1.0 CE A:LYS116 4.8 23.8 1.0 HB3 A:ASP83 4.8 16.4 1.0 HZ3 A:LYS130 4.9 35.8 1.0 CA A:LYS116 4.9 13.9 1.0 HB2 A:ASP83 4.9 16.4 1.0 N A:VAL47 4.9 16.0 1.0 HZ3 A:LYS116 5.0 30.9 1.0

Calcium binding site 2 out of 2 in the Serratia Nucc Bound to CA3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Serratia Nucc Bound to CA3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:14.7 occ:1.00 O A:VAL244 2.3 16.4 1.0 O A:SER74 2.3 16.0 1.0 O A:HOH576 2.3 18.0 1.0 OD1 A:ASP247 2.4 17.6 1.0 O A:HOH458 2.4 16.9 1.0 OXT A:ACT303 2.4 16.2 1.0 O A:ACT303 2.5 15.4 1.0 C A:ACT303 2.7 17.9 1.0 CG A:ASP247 3.4 22.1 1.0 HB2 A:SER74 3.4 17.7 1.0 C A:SER74 3.5 13.7 1.0 C A:VAL244 3.5 18.4 1.0 H A:SER248 3.8 22.0 1.0 H A:ASP247 3.8 20.3 1.0 HA A:TYR245 3.8 18.6 1.0 OD2 A:ASP247 3.8 22.3 1.0 HB3 A:SER248 3.8 23.1 1.0 O A:HOH597 4.0 26.2 1.0 HA A:SER74 4.1 16.1 1.0 HB A:VAL244 4.1 24.2 1.0 HG A:SER248 4.1 24.2 1.0 O A:HOH575 4.1 26.8 1.0 CA A:SER74 4.2 13.5 1.0 HA A:GLU75 4.2 19.7 1.0 HA A:VAL244 4.2 22.1 1.0 CB A:SER74 4.2 14.8 1.0 CH3 A:ACT303 4.3 20.4 1.0 N A:SER248 4.4 18.3 1.0 CA A:VAL244 4.4 18.4 1.0 N A:TYR245 4.4 14.8 1.0 CA A:TYR245 4.4 15.6 1.0 N A:ASP247 4.4 17.0 1.0 OG A:SER248 4.5 20.2 1.0 O A:HOH442 4.5 16.3 1.0 CB A:SER248 4.6 19.3 1.0 N A:GLU75 4.6 13.9 1.0 H1 A:ACT303 4.6 24.5 1.0 C A:TYR245 4.6 17.3 1.0 H3 A:ACT303 4.6 24.5 1.0 O A:HOH500 4.7 25.1 1.0 HG A:SER74 4.7 19.0 1.0 CB A:ASP247 4.7 19.7 1.0 CB A:VAL244 4.8 20.2 1.0 H2 A:ACT303 4.8 24.5 1.0 CA A:GLU75 4.8 16.4 1.0 N A:ILE246 4.9 16.1 1.0 HB3 A:SER74 4.9 17.7 1.0 H A:ILE246 4.9 19.2 1.0 CA A:ASP247 4.9 17.5 1.0

C.Garcia-Doval, D.Mayo-Munoz, L.M.Smith, P.C.Fineran. Serratia Nucc Bound to CA3 To Be Published.