Calcium in PDB 7zmk: Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
Protein crystallography data
The structure of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody, PDB code: 7zmk
was solved by
N.S.Laursen,
G.R.Andersen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.85 /
3.40
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
317.32,
126.6,
187.55,
90,
98.86,
90
|
|
R / Rfree (%)
|
23.9 /
27.7
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
(pdb code 7zmk). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody, PDB code: 7zmk:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 1 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:82.8
occ:1.00
|
OD1
|
A:ASP172
|
2.3
|
102.0
|
1.0
|
|
O
|
A:PHE174
|
2.3
|
92.2
|
1.0
|
|
OD2
|
A:ASP170
|
2.4
|
98.6
|
1.0
|
|
OD1
|
A:ASP170
|
2.4
|
100.4
|
1.0
|
|
O
|
A:GLN176
|
2.5
|
113.6
|
1.0
|
|
O
|
A:HOH502
|
2.7
|
84.3
|
1.0
|
|
CG
|
A:ASP170
|
2.7
|
99.3
|
1.0
|
|
O
|
A:HOH503
|
2.7
|
86.8
|
1.0
|
|
CG
|
A:ASP172
|
3.4
|
99.1
|
1.0
|
|
HA
|
A:ASN177
|
3.5
|
133.7
|
1.0
|
|
C
|
A:PHE174
|
3.5
|
94.7
|
1.0
|
|
C
|
A:GLN176
|
3.5
|
112.2
|
1.0
|
|
O
|
A:VAL175
|
3.8
|
104.3
|
1.0
|
|
OD2
|
A:ASP172
|
3.8
|
101.6
|
1.0
|
|
O
|
A:ASP172
|
3.8
|
90.2
|
1.0
|
|
H
|
A:PHE174
|
3.9
|
128.2
|
1.0
|
|
C
|
A:VAL175
|
3.9
|
103.9
|
1.0
|
|
HB3
|
A:PHE174
|
4.1
|
108.6
|
1.0
|
|
HA
|
A:VAL175
|
4.2
|
121.3
|
1.0
|
|
CB
|
A:ASP170
|
4.2
|
100.7
|
1.0
|
|
CA
|
A:ASN177
|
4.3
|
111.2
|
1.0
|
|
N
|
A:PHE174
|
4.3
|
106.7
|
1.0
|
|
N
|
A:ASN177
|
4.3
|
112.0
|
1.0
|
|
N
|
A:GLN176
|
4.3
|
107.2
|
1.0
|
|
H
|
A:CYS178
|
4.4
|
145.0
|
1.0
|
|
CA
|
A:PHE174
|
4.4
|
97.7
|
1.0
|
|
N
|
A:VAL175
|
4.4
|
98.4
|
1.0
|
|
CA
|
A:VAL175
|
4.4
|
100.9
|
1.0
|
|
H
|
A:ASP172
|
4.5
|
122.2
|
1.0
|
|
C
|
A:ASP172
|
4.5
|
94.6
|
1.0
|
|
HB3
|
A:ASP170
|
4.5
|
121.0
|
1.0
|
|
CA
|
A:GLN176
|
4.5
|
110.9
|
1.0
|
|
HB2
|
A:ASP170
|
4.6
|
121.0
|
1.0
|
|
CB
|
A:ASP172
|
4.7
|
96.8
|
1.0
|
|
HZ2
|
O:LYS163
|
4.7
|
118.9
|
1.0
|
|
N
|
A:ASP172
|
4.8
|
101.7
|
1.0
|
|
CB
|
A:PHE174
|
4.8
|
90.3
|
1.0
|
|
H
|
A:GLN176
|
4.8
|
128.8
|
1.0
|
|
HA
|
A:GLN176
|
4.9
|
133.3
|
1.0
|
|
CA
|
A:ASP172
|
4.9
|
97.5
|
1.0
|
|
HB2
|
A:ASN177
|
4.9
|
133.2
|
1.0
|
|
O
|
O:GLN171
|
5.0
|
104.4
|
1.0
|
|
Calcium binding site 2 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 2 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:95.3
occ:1.00
|
OD1
|
D:ASP172
|
2.2
|
86.8
|
1.0
|
|
O
|
D:PHE174
|
2.3
|
102.8
|
1.0
|
|
OD2
|
D:ASP170
|
2.4
|
121.5
|
1.0
|
|
OD1
|
D:ASP170
|
2.4
|
123.8
|
1.0
|
|
O
|
D:GLN176
|
2.5
|
103.2
|
1.0
|
|
O
|
D:HOH502
|
2.7
|
90.3
|
1.0
|
|
O
|
D:HOH503
|
2.7
|
136.8
|
1.0
|
|
CG
|
D:ASP170
|
2.7
|
121.1
|
1.0
|
|
CG
|
D:ASP172
|
3.3
|
92.4
|
1.0
|
|
HA
|
D:ASN177
|
3.5
|
131.0
|
1.0
|
|
C
|
D:PHE174
|
3.5
|
103.0
|
1.0
|
|
C
|
D:GLN176
|
3.6
|
105.6
|
1.0
|
|
O
|
D:VAL175
|
3.7
|
117.3
|
1.0
|
|
OD2
|
D:ASP172
|
3.8
|
94.8
|
1.0
|
|
H
|
D:PHE174
|
3.8
|
127.2
|
1.0
|
|
O
|
D:ASP172
|
3.8
|
89.2
|
1.0
|
|
C
|
D:VAL175
|
3.9
|
114.5
|
1.0
|
|
HB3
|
D:PHE174
|
4.0
|
111.1
|
1.0
|
|
HA
|
D:VAL175
|
4.2
|
139.8
|
1.0
|
|
CB
|
D:ASP170
|
4.2
|
117.0
|
1.0
|
|
N
|
D:PHE174
|
4.3
|
105.9
|
1.0
|
|
CA
|
D:ASN177
|
4.3
|
109.0
|
1.0
|
|
N
|
D:ASN177
|
4.3
|
105.2
|
1.0
|
|
CA
|
D:PHE174
|
4.4
|
101.0
|
1.0
|
|
N
|
D:GLN176
|
4.4
|
112.2
|
1.0
|
|
H
|
D:CYS178
|
4.4
|
137.4
|
1.0
|
|
N
|
D:VAL175
|
4.4
|
112.0
|
1.0
|
|
C
|
D:ASP172
|
4.4
|
89.0
|
1.0
|
|
CA
|
D:VAL175
|
4.4
|
116.3
|
1.0
|
|
H
|
D:ASP172
|
4.5
|
119.5
|
1.0
|
|
HB3
|
D:ASP170
|
4.5
|
140.6
|
1.0
|
|
CA
|
D:GLN176
|
4.6
|
111.3
|
1.0
|
|
HB2
|
D:ASP170
|
4.6
|
140.6
|
1.0
|
|
CB
|
D:ASP172
|
4.6
|
89.6
|
1.0
|
|
HZ2
|
U:LYS163
|
4.7
|
115.5
|
1.0
|
|
CB
|
D:PHE174
|
4.7
|
92.5
|
1.0
|
|
N
|
D:ASP172
|
4.7
|
99.4
|
1.0
|
|
H
|
D:GLN176
|
4.8
|
134.8
|
1.0
|
|
CA
|
D:ASP172
|
4.8
|
92.2
|
1.0
|
|
O
|
U:GLN171
|
4.9
|
124.2
|
1.0
|
|
HA
|
D:GLN176
|
4.9
|
133.8
|
1.0
|
|
HB2
|
D:ASN177
|
4.9
|
136.4
|
1.0
|
|
Calcium binding site 3 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 3 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca501
b:129.5
occ:1.00
|
O
|
I:PHE174
|
2.3
|
125.0
|
1.0
|
|
OD2
|
I:ASP170
|
2.3
|
136.9
|
1.0
|
|
OD1
|
I:ASP172
|
2.3
|
135.9
|
1.0
|
|
OD1
|
I:ASP170
|
2.4
|
136.6
|
1.0
|
|
O
|
I:GLN176
|
2.5
|
156.0
|
1.0
|
|
CG
|
I:ASP170
|
2.7
|
135.1
|
1.0
|
|
O
|
I:HOH503
|
2.7
|
103.8
|
1.0
|
|
O
|
I:HOH502
|
2.7
|
132.3
|
1.0
|
|
C
|
I:PHE174
|
3.5
|
129.0
|
1.0
|
|
CG
|
I:ASP172
|
3.5
|
134.4
|
1.0
|
|
C
|
I:GLN176
|
3.6
|
154.9
|
1.0
|
|
HA
|
I:ASN177
|
3.6
|
183.8
|
1.0
|
|
O
|
I:VAL175
|
3.7
|
140.4
|
1.0
|
|
O
|
I:ASP172
|
3.9
|
127.2
|
1.0
|
|
C
|
I:VAL175
|
3.9
|
137.5
|
1.0
|
|
H
|
I:PHE174
|
3.9
|
152.9
|
1.0
|
|
OD2
|
I:ASP172
|
4.0
|
135.5
|
1.0
|
|
HB3
|
I:PHE174
|
4.1
|
158.8
|
1.0
|
|
HA
|
I:VAL175
|
4.1
|
159.3
|
1.0
|
|
CB
|
I:ASP170
|
4.2
|
129.5
|
1.0
|
|
N
|
I:PHE174
|
4.3
|
127.2
|
1.0
|
|
N
|
I:GLN176
|
4.3
|
141.6
|
1.0
|
|
N
|
I:VAL175
|
4.4
|
131.7
|
1.0
|
|
CA
|
I:VAL175
|
4.4
|
132.7
|
1.0
|
|
HB3
|
I:ASP170
|
4.4
|
155.5
|
1.0
|
|
CA
|
I:PHE174
|
4.4
|
129.2
|
1.0
|
|
N
|
I:ASN177
|
4.4
|
152.2
|
1.0
|
|
CA
|
I:ASN177
|
4.4
|
153.0
|
1.0
|
|
H
|
I:CYS178
|
4.4
|
179.2
|
1.0
|
|
HB2
|
I:ASP170
|
4.5
|
155.5
|
1.0
|
|
C
|
I:ASP172
|
4.5
|
124.4
|
1.0
|
|
H
|
I:ASP172
|
4.5
|
143.2
|
1.0
|
|
CA
|
I:GLN176
|
4.6
|
153.7
|
1.0
|
|
CB
|
I:ASP172
|
4.8
|
129.3
|
1.0
|
|
CB
|
I:PHE174
|
4.8
|
132.2
|
1.0
|
|
H
|
I:GLN176
|
4.8
|
170.1
|
1.0
|
|
N
|
I:ASP172
|
4.8
|
119.2
|
1.0
|
|
HA
|
I:GLN176
|
4.9
|
184.6
|
1.0
|
|
CA
|
I:ASP172
|
4.9
|
123.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 4 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Ca501
b:83.6
occ:1.00
|
OD1
|
L:ASP172
|
2.2
|
84.8
|
1.0
|
|
O
|
L:PHE174
|
2.2
|
99.5
|
1.0
|
|
OD1
|
L:ASP170
|
2.3
|
92.8
|
1.0
|
|
OD2
|
L:ASP170
|
2.3
|
91.5
|
1.0
|
|
O
|
L:GLN176
|
2.6
|
107.6
|
1.0
|
|
CG
|
L:ASP170
|
2.6
|
92.2
|
1.0
|
|
O
|
L:HOH502
|
2.7
|
173.8
|
1.0
|
|
O
|
L:HOH503
|
2.7
|
88.6
|
1.0
|
|
CG
|
L:ASP172
|
3.3
|
87.5
|
1.0
|
|
C
|
L:PHE174
|
3.4
|
102.5
|
1.0
|
|
HA
|
L:ASN177
|
3.6
|
119.0
|
1.0
|
|
C
|
L:GLN176
|
3.7
|
105.6
|
1.0
|
|
H
|
L:PHE174
|
3.8
|
116.8
|
1.0
|
|
OD2
|
L:ASP172
|
3.8
|
85.2
|
1.0
|
|
O
|
L:ASP172
|
3.9
|
80.6
|
1.0
|
|
O
|
L:VAL175
|
4.0
|
108.1
|
1.0
|
|
HB3
|
L:PHE174
|
4.0
|
120.2
|
1.0
|
|
C
|
L:VAL175
|
4.1
|
107.7
|
1.0
|
|
CB
|
L:ASP170
|
4.2
|
91.5
|
1.0
|
|
N
|
L:PHE174
|
4.2
|
97.2
|
1.0
|
|
HA
|
L:VAL175
|
4.2
|
129.9
|
1.0
|
|
CA
|
L:PHE174
|
4.3
|
100.7
|
1.0
|
|
H
|
L:CYS178
|
4.3
|
124.7
|
1.0
|
|
N
|
L:VAL175
|
4.4
|
106.7
|
1.0
|
|
HB3
|
L:ASP170
|
4.4
|
109.9
|
1.0
|
|
C
|
L:ASP172
|
4.4
|
81.0
|
1.0
|
|
CA
|
L:ASN177
|
4.4
|
99.0
|
1.0
|
|
N
|
L:GLN176
|
4.4
|
109.8
|
1.0
|
|
H
|
L:ASP172
|
4.5
|
96.5
|
1.0
|
|
N
|
L:ASN177
|
4.5
|
104.8
|
1.0
|
|
CA
|
L:VAL175
|
4.5
|
108.1
|
1.0
|
|
HB2
|
L:ASP170
|
4.6
|
109.9
|
1.0
|
|
CB
|
L:ASP172
|
4.6
|
88.8
|
1.0
|
|
CB
|
L:PHE174
|
4.7
|
100.0
|
1.0
|
|
CA
|
L:GLN176
|
4.7
|
112.7
|
1.0
|
|
N
|
L:ASP172
|
4.7
|
80.3
|
1.0
|
|
CA
|
L:ASP172
|
4.8
|
82.0
|
1.0
|
|
H
|
L:GLN176
|
4.9
|
132.0
|
1.0
|
|
HB2
|
L:ASP172
|
5.0
|
106.7
|
1.0
|
|
Calcium binding site 5 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 5 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca501
b:97.8
occ:1.00
|
O
|
O:PHE174
|
2.2
|
108.8
|
1.0
|
|
OD1
|
O:ASP172
|
2.3
|
114.8
|
1.0
|
|
OD2
|
O:ASP170
|
2.4
|
119.6
|
1.0
|
|
OD1
|
O:ASP170
|
2.4
|
119.8
|
1.0
|
|
O
|
O:GLN176
|
2.5
|
131.3
|
1.0
|
|
O
|
O:HOH503
|
2.7
|
136.0
|
1.0
|
|
O
|
O:HOH502
|
2.7
|
117.2
|
1.0
|
|
CG
|
O:ASP170
|
2.7
|
120.0
|
1.0
|
|
CG
|
O:ASP172
|
3.4
|
113.3
|
1.0
|
|
C
|
O:PHE174
|
3.4
|
109.7
|
1.0
|
|
C
|
O:GLN176
|
3.5
|
130.5
|
1.0
|
|
O
|
O:VAL175
|
3.6
|
130.0
|
1.0
|
|
HA
|
O:ASN177
|
3.6
|
147.8
|
1.0
|
|
C
|
O:VAL175
|
3.8
|
128.3
|
1.0
|
|
O
|
O:ASP172
|
3.9
|
98.6
|
1.0
|
|
OD2
|
O:ASP172
|
3.9
|
114.9
|
1.0
|
|
H
|
O:PHE174
|
3.9
|
126.6
|
1.0
|
|
HB3
|
O:PHE174
|
4.0
|
121.7
|
1.0
|
|
HA
|
O:VAL175
|
4.1
|
148.1
|
1.0
|
|
CB
|
O:ASP170
|
4.2
|
119.7
|
1.0
|
|
N
|
O:GLN176
|
4.3
|
132.3
|
1.0
|
|
N
|
O:PHE174
|
4.3
|
105.3
|
1.0
|
|
CA
|
O:VAL175
|
4.3
|
123.3
|
1.0
|
|
N
|
O:ASN177
|
4.3
|
128.4
|
1.0
|
|
N
|
O:VAL175
|
4.3
|
117.8
|
1.0
|
|
CA
|
O:PHE174
|
4.3
|
107.2
|
1.0
|
|
CA
|
O:ASN177
|
4.4
|
123.0
|
1.0
|
|
CA
|
O:GLN176
|
4.5
|
134.0
|
1.0
|
|
HZ2
|
A:LYS163
|
4.5
|
101.9
|
1.0
|
|
C
|
O:ASP172
|
4.5
|
100.3
|
1.0
|
|
HB3
|
O:ASP170
|
4.5
|
143.9
|
1.0
|
|
H
|
O:ASP172
|
4.5
|
126.5
|
1.0
|
|
H
|
O:CYS178
|
4.6
|
156.4
|
1.0
|
|
HB2
|
O:ASP170
|
4.6
|
143.9
|
1.0
|
|
CB
|
O:PHE174
|
4.7
|
101.3
|
1.0
|
|
CB
|
O:ASP172
|
4.7
|
108.7
|
1.0
|
|
H
|
O:GLN176
|
4.8
|
159.0
|
1.0
|
|
HA
|
O:GLN176
|
4.8
|
161.0
|
1.0
|
|
N
|
O:ASP172
|
4.8
|
105.3
|
1.0
|
|
O
|
A:GLN171
|
4.8
|
102.9
|
1.0
|
|
CA
|
O:ASP172
|
4.9
|
104.5
|
1.0
|
|
HB2
|
O:ASN177
|
4.9
|
140.7
|
1.0
|
|
HE3
|
A:LYS163
|
5.0
|
98.1
|
1.0
|
|
Calcium binding site 6 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 6 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Ca501
b:111.7
occ:1.00
|
O
|
R:PHE174
|
2.3
|
133.2
|
1.0
|
|
OD1
|
R:ASP172
|
2.3
|
114.9
|
1.0
|
|
OD2
|
R:ASP170
|
2.3
|
122.5
|
1.0
|
|
OD1
|
R:ASP170
|
2.4
|
121.9
|
1.0
|
|
O
|
R:GLN176
|
2.5
|
130.2
|
1.0
|
|
O
|
R:HOH503
|
2.7
|
112.4
|
1.0
|
|
O
|
R:HOH502
|
2.7
|
121.2
|
1.0
|
|
CG
|
R:ASP170
|
2.7
|
120.3
|
1.0
|
|
CG
|
R:ASP172
|
3.4
|
114.0
|
1.0
|
|
C
|
R:PHE174
|
3.5
|
134.7
|
1.0
|
|
C
|
R:GLN176
|
3.6
|
131.6
|
1.0
|
|
HA
|
R:ASN177
|
3.6
|
151.0
|
1.0
|
|
O
|
R:VAL175
|
3.7
|
159.2
|
1.0
|
|
O
|
R:ASP172
|
3.9
|
116.9
|
1.0
|
|
H
|
R:PHE174
|
3.9
|
155.2
|
1.0
|
|
C
|
R:VAL175
|
3.9
|
151.6
|
1.0
|
|
OD2
|
R:ASP172
|
3.9
|
113.4
|
1.0
|
|
HB3
|
R:PHE174
|
4.1
|
151.5
|
1.0
|
|
HA
|
R:VAL175
|
4.1
|
181.7
|
1.0
|
|
CB
|
R:ASP170
|
4.2
|
115.1
|
1.0
|
|
N
|
R:PHE174
|
4.3
|
129.2
|
1.0
|
|
N
|
R:GLN176
|
4.3
|
144.1
|
1.0
|
|
N
|
R:VAL175
|
4.4
|
141.8
|
1.0
|
|
CA
|
R:PHE174
|
4.4
|
130.5
|
1.0
|
|
CA
|
R:VAL175
|
4.4
|
151.2
|
1.0
|
|
N
|
R:ASN177
|
4.4
|
127.8
|
1.0
|
|
CA
|
R:ASN177
|
4.4
|
125.7
|
1.0
|
|
H
|
R:CYS178
|
4.4
|
155.8
|
1.0
|
|
HB3
|
R:ASP170
|
4.5
|
138.3
|
1.0
|
|
C
|
R:ASP172
|
4.5
|
115.7
|
1.0
|
|
H
|
R:ASP172
|
4.5
|
134.4
|
1.0
|
|
HB2
|
R:ASP170
|
4.6
|
138.3
|
1.0
|
|
CA
|
R:GLN176
|
4.6
|
138.6
|
1.0
|
|
CB
|
R:ASP172
|
4.7
|
113.6
|
1.0
|
|
CB
|
R:PHE174
|
4.8
|
126.1
|
1.0
|
|
N
|
R:ASP172
|
4.8
|
111.8
|
1.0
|
|
H
|
R:GLN176
|
4.8
|
173.0
|
1.0
|
|
HA
|
R:GLN176
|
4.9
|
166.5
|
1.0
|
|
CA
|
R:ASP172
|
4.9
|
113.7
|
1.0
|
|
Calcium binding site 7 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 7 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Ca501
b:97.0
occ:1.00
|
OD2
|
U:ASP170
|
2.3
|
165.3
|
1.0
|
|
OD1
|
U:ASP172
|
2.3
|
116.5
|
1.0
|
|
O
|
U:PHE174
|
2.4
|
124.3
|
1.0
|
|
OD1
|
U:ASP170
|
2.4
|
165.7
|
1.0
|
|
O
|
U:GLN176
|
2.4
|
126.8
|
1.0
|
|
CG
|
U:ASP170
|
2.6
|
162.7
|
1.0
|
|
O
|
U:HOH503
|
2.6
|
156.7
|
1.0
|
|
O
|
U:HOH502
|
2.7
|
81.9
|
1.0
|
|
CG
|
U:ASP172
|
3.4
|
116.7
|
1.0
|
|
HA
|
U:ASN177
|
3.4
|
146.8
|
1.0
|
|
C
|
U:GLN176
|
3.5
|
126.5
|
1.0
|
|
C
|
U:PHE174
|
3.6
|
124.4
|
1.0
|
|
OD2
|
U:ASP172
|
3.8
|
116.1
|
1.0
|
|
O
|
U:VAL175
|
3.8
|
126.2
|
1.0
|
|
O
|
U:ASP172
|
3.9
|
114.0
|
1.0
|
|
H
|
U:PHE174
|
4.0
|
145.3
|
1.0
|
|
C
|
U:VAL175
|
4.0
|
124.9
|
1.0
|
|
CB
|
U:ASP170
|
4.1
|
155.4
|
1.0
|
|
HB3
|
U:PHE174
|
4.1
|
154.4
|
1.0
|
|
CA
|
U:ASN177
|
4.2
|
122.2
|
1.0
|
|
N
|
U:ASN177
|
4.2
|
124.2
|
1.0
|
|
HA
|
U:VAL175
|
4.3
|
149.2
|
1.0
|
|
HB3
|
U:ASP170
|
4.3
|
186.7
|
1.0
|
|
H
|
U:CYS178
|
4.4
|
156.3
|
1.0
|
|
N
|
U:PHE174
|
4.4
|
120.9
|
1.0
|
|
N
|
U:GLN176
|
4.4
|
125.8
|
1.0
|
|
HB2
|
U:ASP170
|
4.4
|
186.7
|
1.0
|
|
CA
|
U:PHE174
|
4.5
|
125.0
|
1.0
|
|
N
|
U:VAL175
|
4.5
|
125.2
|
1.0
|
|
CA
|
U:VAL175
|
4.5
|
124.2
|
1.0
|
|
CA
|
U:GLN176
|
4.5
|
128.8
|
1.0
|
|
H
|
U:ASP172
|
4.5
|
143.4
|
1.0
|
|
HZ2
|
D:LYS163
|
4.5
|
128.1
|
1.0
|
|
C
|
U:ASP172
|
4.6
|
116.5
|
1.0
|
|
O
|
D:GLN171
|
4.7
|
107.1
|
1.0
|
|
CB
|
U:ASP172
|
4.7
|
117.2
|
1.0
|
|
HB2
|
U:ASN177
|
4.8
|
137.5
|
1.0
|
|
CB
|
U:PHE174
|
4.8
|
128.5
|
1.0
|
|
HA
|
U:GLN176
|
4.8
|
154.8
|
1.0
|
|
N
|
U:ASP172
|
4.8
|
119.4
|
1.0
|
|
H
|
U:GLN176
|
4.9
|
151.2
|
1.0
|
|
HE3
|
D:LYS163
|
4.9
|
122.8
|
1.0
|
|
CA
|
U:ASP172
|
4.9
|
117.2
|
1.0
|
|
Calcium binding site 8 out
of 8 in 7zmk
Go back to
Calcium Binding Sites List in 7zmk
Calcium binding site 8 out
of 8 in the Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Human MFAP4 in Complex with the Fab Fragment of the AS0326 Monoclonal Antibody within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Ca501
b:84.3
occ:1.00
|
O
|
X:PHE174
|
2.3
|
91.2
|
1.0
|
|
OD1
|
X:ASP172
|
2.3
|
88.2
|
1.0
|
|
OD2
|
X:ASP170
|
2.3
|
98.7
|
1.0
|
|
OD1
|
X:ASP170
|
2.4
|
100.4
|
1.0
|
|
O
|
X:GLN176
|
2.5
|
94.5
|
1.0
|
|
CG
|
X:ASP170
|
2.7
|
98.2
|
1.0
|
|
O
|
X:HOH503
|
2.7
|
109.8
|
1.0
|
|
O
|
X:HOH502
|
2.7
|
158.7
|
1.0
|
|
C
|
X:PHE174
|
3.4
|
96.3
|
1.0
|
|
CG
|
X:ASP172
|
3.4
|
89.2
|
1.0
|
|
HA
|
X:ASN177
|
3.5
|
116.9
|
1.0
|
|
C
|
X:GLN176
|
3.6
|
97.1
|
1.0
|
|
H
|
X:PHE174
|
3.8
|
111.3
|
1.0
|
|
O
|
X:VAL175
|
3.8
|
90.8
|
1.0
|
|
OD2
|
X:ASP172
|
3.9
|
87.2
|
1.0
|
|
HB3
|
X:PHE174
|
3.9
|
112.3
|
1.0
|
|
C
|
X:VAL175
|
3.9
|
106.4
|
1.0
|
|
O
|
X:ASP172
|
4.0
|
94.8
|
1.0
|
|
CB
|
X:ASP170
|
4.2
|
93.6
|
1.0
|
|
HA
|
X:VAL175
|
4.2
|
128.8
|
1.0
|
|
N
|
X:PHE174
|
4.2
|
92.6
|
1.0
|
|
CA
|
X:PHE174
|
4.3
|
94.5
|
1.0
|
|
N
|
X:ASN177
|
4.3
|
98.0
|
1.0
|
|
N
|
X:GLN176
|
4.3
|
107.3
|
1.0
|
|
CA
|
X:ASN177
|
4.3
|
97.2
|
1.0
|
|
H
|
X:CYS178
|
4.3
|
123.5
|
1.0
|
|
N
|
X:VAL175
|
4.4
|
101.5
|
1.0
|
|
HB3
|
X:ASP170
|
4.4
|
112.5
|
1.0
|
|
CA
|
X:VAL175
|
4.4
|
107.2
|
1.0
|
|
CA
|
X:GLN176
|
4.5
|
105.9
|
1.0
|
|
H
|
X:ASP172
|
4.6
|
100.5
|
1.0
|
|
HB2
|
X:ASP170
|
4.6
|
112.5
|
1.0
|
|
C
|
X:ASP172
|
4.6
|
91.1
|
1.0
|
|
CB
|
X:PHE174
|
4.6
|
93.4
|
1.0
|
|
CB
|
X:ASP172
|
4.7
|
91.4
|
1.0
|
|
H
|
X:GLN176
|
4.8
|
128.9
|
1.0
|
|
N
|
X:ASP172
|
4.9
|
83.6
|
1.0
|
|
HA
|
X:GLN176
|
4.9
|
127.2
|
1.0
|
|
HB2
|
X:ASN177
|
5.0
|
118.3
|
1.0
|
|
CA
|
X:ASP172
|
5.0
|
88.0
|
1.0
|
|
Reference:
B.Pilecki,
N.S.Laursen,
G.R.Andersen.
N/A N/A.
Page generated: Thu Jul 10 02:53:57 2025
|
