Calcium in PDB 7zwh: Vwf Tubules of D1D2 and D'D3A1 Domains
Calcium Binding Sites:
The binding sites of Calcium atom in the Vwf Tubules of D1D2 and D'D3A1 Domains
(pdb code 7zwh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Vwf Tubules of D1D2 and D'D3A1 Domains, PDB code: 7zwh:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 1 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1205
b:111.4
occ:1.00
|
OD1
|
D:ASP1006
|
2.1
|
103.5
|
1.0
|
|
OD1
|
D:ASP1000
|
2.2
|
107.7
|
1.0
|
|
OD1
|
D:ASN1005
|
2.2
|
97.5
|
1.0
|
|
OD2
|
D:ASP879
|
2.3
|
96.9
|
1.0
|
|
OD1
|
D:ASN998
|
2.5
|
97.8
|
1.0
|
|
CG
|
D:ASP1000
|
2.5
|
102.3
|
1.0
|
|
OD2
|
D:ASP1000
|
2.5
|
101.9
|
1.0
|
|
O
|
D:ILE1002
|
2.6
|
92.9
|
1.0
|
|
O
|
D:ASN1005
|
3.1
|
93.9
|
1.0
|
|
HD21
|
D:ASN998
|
3.1
|
94.4
|
1.0
|
|
H
|
D:ASP1000
|
3.2
|
99.1
|
1.0
|
|
CG
|
D:ASN998
|
3.3
|
93.1
|
1.0
|
|
CG
|
D:ASN1005
|
3.3
|
96.8
|
1.0
|
|
CG
|
D:ASP1006
|
3.4
|
102.5
|
1.0
|
|
H
|
D:ILE1002
|
3.5
|
90.7
|
1.0
|
|
ND2
|
D:ASN998
|
3.5
|
97.4
|
1.0
|
|
CG
|
D:ASP879
|
3.5
|
98.1
|
1.0
|
|
H
|
D:ASN998
|
3.6
|
92.8
|
1.0
|
|
HB
|
D:ILE1002
|
3.6
|
89.8
|
1.0
|
|
C
|
D:ASN1005
|
3.7
|
89.3
|
1.0
|
|
C
|
D:ILE1002
|
3.7
|
88.0
|
1.0
|
|
HD21
|
D:ASN1005
|
3.8
|
94.4
|
1.0
|
|
CB
|
D:ASP1000
|
3.8
|
99.3
|
1.0
|
|
HA
|
D:ASP1006
|
3.9
|
97.8
|
1.0
|
|
HB3
|
D:ASP1000
|
4.0
|
99.7
|
1.0
|
|
ND2
|
D:ASN1005
|
4.0
|
98.0
|
1.0
|
|
N
|
D:ASP1000
|
4.0
|
99.4
|
1.0
|
|
OD2
|
D:ASP1006
|
4.1
|
104.6
|
1.0
|
|
N
|
D:ILE1002
|
4.1
|
89.6
|
1.0
|
|
H
|
D:PHE999
|
4.2
|
95.0
|
1.0
|
|
N
|
D:ASP1006
|
4.2
|
93.2
|
1.0
|
|
OD1
|
D:ASP879
|
4.3
|
98.3
|
1.0
|
|
HD22
|
D:ASN998
|
4.3
|
93.3
|
1.0
|
|
CA
|
D:ILE1002
|
4.3
|
86.2
|
1.0
|
|
HB2
|
D:ASP879
|
4.3
|
93.8
|
1.0
|
|
N
|
D:ASN998
|
4.3
|
90.1
|
1.0
|
|
CA
|
D:ASP1006
|
4.3
|
94.9
|
1.0
|
|
H
|
D:ASN1005
|
4.4
|
93.1
|
1.0
|
|
CB
|
D:ASP1006
|
4.4
|
98.2
|
1.0
|
|
CB
|
D:ILE1002
|
4.4
|
85.9
|
1.0
|
|
CA
|
D:ASP1000
|
4.4
|
97.5
|
1.0
|
|
CB
|
D:ASN1005
|
4.5
|
93.8
|
1.0
|
|
H
|
D:GLY1001
|
4.5
|
89.7
|
1.0
|
|
CB
|
D:ASP879
|
4.5
|
97.4
|
1.0
|
|
CA
|
D:ASN1005
|
4.5
|
90.3
|
1.0
|
|
N
|
D:PHE999
|
4.5
|
92.0
|
1.0
|
|
HB2
|
D:ASP1000
|
4.5
|
99.2
|
1.0
|
|
CB
|
D:ASN998
|
4.6
|
87.5
|
1.0
|
|
HA
|
D:GLN1003
|
4.6
|
91.1
|
1.0
|
|
HB2
|
D:ASP1006
|
4.6
|
98.1
|
1.0
|
|
N
|
D:ASN1005
|
4.7
|
91.1
|
1.0
|
|
HB3
|
D:ASP879
|
4.8
|
94.1
|
1.0
|
|
N
|
D:GLY1001
|
4.8
|
88.0
|
1.0
|
|
C
|
D:ASN998
|
4.8
|
90.1
|
1.0
|
|
HG22
|
D:ILE1002
|
4.8
|
89.3
|
1.0
|
|
HB2
|
D:ASN1005
|
4.8
|
93.8
|
1.0
|
|
CA
|
D:ASN998
|
4.8
|
91.8
|
1.0
|
|
HD12
|
D:ILE1002
|
4.8
|
90.3
|
1.0
|
|
N
|
D:GLN1003
|
4.8
|
87.4
|
1.0
|
|
C
|
D:ASP1000
|
4.8
|
96.7
|
1.0
|
|
HD22
|
D:ASN1005
|
4.8
|
93.9
|
1.0
|
|
H
|
D:ASP1006
|
4.9
|
97.1
|
1.0
|
|
HA3
|
D:GLY997
|
4.9
|
85.2
|
1.0
|
|
HB2
|
D:ASN998
|
5.0
|
92.5
|
1.0
|
|
Calcium binding site 2 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 2 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1206
b:175.0
occ:1.00
|
OD1
|
D:ASN164
|
2.1
|
118.9
|
1.0
|
|
OD1
|
D:ASN166
|
2.1
|
124.9
|
1.0
|
|
OD2
|
D:ASP47
|
2.1
|
127.8
|
1.0
|
|
OD1
|
D:ASP172
|
2.1
|
127.2
|
1.0
|
|
O
|
D:ASN164
|
2.3
|
119.3
|
1.0
|
|
CG
|
D:ASP172
|
2.6
|
126.8
|
1.0
|
|
OD2
|
D:ASP172
|
2.7
|
127.8
|
1.0
|
|
H
|
D:ASN166
|
2.9
|
120.2
|
1.0
|
|
CG
|
D:ASN166
|
2.9
|
121.1
|
1.0
|
|
O
|
D:PHE168
|
3.1
|
126.0
|
1.0
|
|
OD1
|
D:ASP171
|
3.2
|
119.6
|
1.0
|
|
HD21
|
D:ASN166
|
3.2
|
119.5
|
1.0
|
|
CG
|
D:ASN164
|
3.2
|
116.2
|
1.0
|
|
CG
|
D:ASP47
|
3.3
|
120.3
|
1.0
|
|
C
|
D:ASN164
|
3.3
|
113.8
|
1.0
|
|
ND2
|
D:ASN166
|
3.4
|
119.0
|
1.0
|
|
HA
|
D:ASP172
|
3.5
|
123.0
|
1.0
|
|
O
|
D:ASN166
|
3.6
|
123.5
|
1.0
|
|
N
|
D:ASN166
|
3.7
|
119.9
|
1.0
|
|
H
|
D:ASN164
|
3.8
|
113.2
|
1.0
|
|
CB
|
D:ASP172
|
3.8
|
124.2
|
1.0
|
|
N
|
D:ASN164
|
3.9
|
111.0
|
1.0
|
|
CA
|
D:ASN164
|
4.0
|
112.9
|
1.0
|
|
HD21
|
D:ASN164
|
4.0
|
114.0
|
1.0
|
|
ND2
|
D:ASN164
|
4.0
|
114.7
|
1.0
|
|
OD1
|
D:ASP47
|
4.1
|
118.3
|
1.0
|
|
CA
|
D:ASP172
|
4.1
|
124.2
|
1.0
|
|
CB
|
D:ASN164
|
4.1
|
111.7
|
1.0
|
|
HA
|
D:ALA169
|
4.1
|
123.6
|
1.0
|
|
HB2
|
D:ASP47
|
4.1
|
117.0
|
1.0
|
|
CB
|
D:ASN166
|
4.2
|
115.3
|
1.0
|
|
HD22
|
D:ASN166
|
4.2
|
119.2
|
1.0
|
|
CG
|
D:ASP171
|
4.2
|
119.5
|
1.0
|
|
HB3
|
D:ASP172
|
4.2
|
122.4
|
1.0
|
|
O
|
D:ASP171
|
4.3
|
119.1
|
1.0
|
|
CA
|
D:ASN166
|
4.3
|
117.8
|
1.0
|
|
C
|
D:PHE168
|
4.3
|
126.2
|
1.0
|
|
CB
|
D:ASP47
|
4.3
|
115.8
|
1.0
|
|
N
|
D:ASP172
|
4.3
|
121.7
|
1.0
|
|
C
|
D:ASN166
|
4.3
|
121.0
|
1.0
|
|
C
|
D:ASP171
|
4.4
|
117.8
|
1.0
|
|
HB2
|
D:ASN164
|
4.4
|
113.1
|
1.0
|
|
N
|
D:PHE165
|
4.4
|
116.3
|
1.0
|
|
HA
|
D:PHE165
|
4.4
|
116.9
|
1.0
|
|
HB2
|
D:ASP172
|
4.5
|
122.7
|
1.0
|
|
C
|
D:GLY163
|
4.5
|
94.2
|
1.0
|
|
H
|
D:ASP171
|
4.6
|
120.1
|
1.0
|
|
HB3
|
D:ASP47
|
4.6
|
116.5
|
1.0
|
|
HA3
|
D:GLY163
|
4.7
|
96.3
|
1.0
|
|
HB3
|
D:ASN166
|
4.7
|
118.5
|
1.0
|
|
OD2
|
D:ASP171
|
4.7
|
116.7
|
1.0
|
|
C
|
D:PHE165
|
4.7
|
116.3
|
1.0
|
|
H
|
D:ASP172
|
4.8
|
122.9
|
1.0
|
|
CA
|
D:PHE165
|
4.8
|
115.3
|
1.0
|
|
HB2
|
D:ASN166
|
4.8
|
118.5
|
1.0
|
|
HD22
|
D:ASN164
|
4.8
|
113.5
|
1.0
|
|
CA
|
D:ALA169
|
4.9
|
125.4
|
1.0
|
|
HB3
|
D:ASN164
|
4.9
|
113.8
|
1.0
|
|
HA
|
D:ASN164
|
4.9
|
113.9
|
1.0
|
|
HB2
|
D:PHE168
|
5.0
|
126.6
|
1.0
|
|
Calcium binding site 3 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 3 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1207
b:96.2
occ:1.00
|
OD1
|
D:ASP533
|
2.1
|
96.6
|
1.0
|
|
OD1
|
D:ASN528
|
2.1
|
79.4
|
1.0
|
|
OD1
|
D:ASP534
|
2.1
|
96.0
|
1.0
|
|
OD2
|
D:ASP400
|
2.2
|
92.8
|
1.0
|
|
O
|
D:ASN530
|
2.3
|
81.0
|
1.0
|
|
OD1
|
D:ASN526
|
2.4
|
86.3
|
1.0
|
|
O
|
D:ASN526
|
2.9
|
91.1
|
1.0
|
|
HD21
|
D:ASN528
|
2.9
|
78.6
|
1.0
|
|
CG
|
D:ASN528
|
2.9
|
77.1
|
1.0
|
|
CG
|
D:ASP533
|
3.1
|
95.6
|
1.0
|
|
ND2
|
D:ASN528
|
3.2
|
81.5
|
1.0
|
|
CG
|
D:ASN526
|
3.3
|
83.1
|
1.0
|
|
H
|
D:ASN528
|
3.3
|
78.4
|
1.0
|
|
H
|
D:ASN530
|
3.4
|
82.7
|
1.0
|
|
OD2
|
D:ASP533
|
3.4
|
99.4
|
1.0
|
|
CG
|
D:ASP534
|
3.4
|
96.4
|
1.0
|
|
CG
|
D:ASP400
|
3.4
|
86.3
|
1.0
|
|
C
|
D:ASN530
|
3.5
|
82.3
|
1.0
|
|
HB3
|
D:ASN530
|
3.6
|
83.0
|
1.0
|
|
HD22
|
D:ASN526
|
3.7
|
84.8
|
1.0
|
|
HB2
|
D:ASP400
|
3.8
|
83.7
|
1.0
|
|
ND2
|
D:ASN526
|
3.9
|
86.6
|
1.0
|
|
HA
|
D:ASP534
|
3.9
|
95.1
|
1.0
|
|
N
|
D:ASN530
|
3.9
|
75.9
|
1.0
|
|
C
|
D:ASN526
|
3.9
|
81.8
|
1.0
|
|
HD22
|
D:ASN528
|
4.1
|
78.1
|
1.0
|
|
N
|
D:ASP534
|
4.1
|
96.1
|
1.0
|
|
OD2
|
D:ASP534
|
4.1
|
99.7
|
1.0
|
|
CA
|
D:ASN530
|
4.1
|
77.6
|
1.0
|
|
H
|
D:ASP534
|
4.1
|
94.3
|
1.0
|
|
H
|
D:ASP533
|
4.1
|
92.7
|
1.0
|
|
N
|
D:ASN528
|
4.1
|
75.1
|
1.0
|
|
CB
|
D:ASP400
|
4.2
|
81.5
|
1.0
|
|
CB
|
D:ASN528
|
4.2
|
74.0
|
1.0
|
|
CB
|
D:ASN530
|
4.3
|
79.7
|
1.0
|
|
HA
|
D:GLN531
|
4.3
|
79.4
|
1.0
|
|
CB
|
D:ASN526
|
4.3
|
81.6
|
1.0
|
|
CA
|
D:ASP534
|
4.4
|
96.9
|
1.0
|
|
OD1
|
D:ASP400
|
4.4
|
88.5
|
1.0
|
|
CB
|
D:ASP534
|
4.4
|
95.2
|
1.0
|
|
C
|
D:ASP533
|
4.4
|
94.2
|
1.0
|
|
H
|
D:GLY529
|
4.4
|
82.7
|
1.0
|
|
CB
|
D:ASP533
|
4.4
|
91.3
|
1.0
|
|
HB3
|
D:ASP400
|
4.5
|
83.3
|
1.0
|
|
HB2
|
D:ASN526
|
4.5
|
83.6
|
1.0
|
|
H
|
D:ASN526
|
4.5
|
84.1
|
1.0
|
|
CA
|
D:ASN526
|
4.5
|
82.2
|
1.0
|
|
N
|
D:GLN531
|
4.6
|
82.3
|
1.0
|
|
CA
|
D:ASN528
|
4.6
|
75.4
|
1.0
|
|
N
|
D:ASN526
|
4.6
|
85.2
|
1.0
|
|
HB3
|
D:ASN528
|
4.6
|
77.5
|
1.0
|
|
N
|
D:GLY529
|
4.6
|
84.9
|
1.0
|
|
HD21
|
D:ASN526
|
4.6
|
84.5
|
1.0
|
|
N
|
D:ASP533
|
4.7
|
91.9
|
1.0
|
|
C
|
D:ASN528
|
4.7
|
72.3
|
1.0
|
|
HB2
|
D:ASP534
|
4.7
|
93.7
|
1.0
|
|
CG
|
D:ASN530
|
4.7
|
87.2
|
1.0
|
|
CA
|
D:ASP533
|
4.7
|
89.9
|
1.0
|
|
HD22
|
D:ASN530
|
4.8
|
84.7
|
1.0
|
|
CA
|
D:GLN531
|
4.8
|
71.3
|
1.0
|
|
HB2
|
D:ASP533
|
4.9
|
92.8
|
1.0
|
|
HB2
|
D:ASN528
|
4.9
|
76.6
|
1.0
|
|
O
|
D:ASP533
|
4.9
|
97.7
|
1.0
|
|
HA
|
D:TYR527
|
4.9
|
77.7
|
1.0
|
|
ND2
|
D:ASN530
|
4.9
|
90.4
|
1.0
|
|
N
|
D:TYR527
|
5.0
|
69.1
|
1.0
|
|
Calcium binding site 4 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 4 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1205
b:123.6
occ:1.00
|
OD1
|
E:ASP1006
|
2.0
|
97.5
|
1.0
|
|
OD1
|
E:ASP1000
|
2.1
|
104.4
|
1.0
|
|
OD1
|
E:ASN998
|
2.2
|
90.3
|
1.0
|
|
OD1
|
E:ASN1005
|
2.2
|
86.9
|
1.0
|
|
OD2
|
E:ASP879
|
2.2
|
94.0
|
1.0
|
|
O
|
E:ILE1002
|
2.2
|
88.6
|
1.0
|
|
CG
|
E:ASP1000
|
2.7
|
98.1
|
1.0
|
|
OD2
|
E:ASP1000
|
2.9
|
94.1
|
1.0
|
|
HD21
|
E:ASN998
|
3.1
|
85.3
|
1.0
|
|
CG
|
E:ASN998
|
3.1
|
87.4
|
1.0
|
|
CG
|
E:ASP1006
|
3.2
|
92.1
|
1.0
|
|
CG
|
E:ASN1005
|
3.2
|
87.7
|
1.0
|
|
H
|
E:ASP1000
|
3.3
|
93.6
|
1.0
|
|
CG
|
E:ASP879
|
3.3
|
91.6
|
1.0
|
|
C
|
E:ILE1002
|
3.4
|
78.8
|
1.0
|
|
ND2
|
E:ASN998
|
3.5
|
93.2
|
1.0
|
|
HD21
|
E:ASN1005
|
3.5
|
85.2
|
1.0
|
|
H
|
E:ASN998
|
3.6
|
83.0
|
1.0
|
|
OD2
|
E:ASP1006
|
3.8
|
95.2
|
1.0
|
|
ND2
|
E:ASN1005
|
3.8
|
88.7
|
1.0
|
|
HB
|
E:ILE1002
|
3.8
|
86.6
|
1.0
|
|
HA
|
E:ASP1006
|
3.8
|
87.9
|
1.0
|
|
HG22
|
E:ILE1002
|
3.9
|
86.0
|
1.0
|
|
C
|
E:ASN1005
|
3.9
|
80.4
|
1.0
|
|
H
|
E:ASN1005
|
4.0
|
84.1
|
1.0
|
|
O
|
E:ASN1005
|
4.0
|
87.8
|
1.0
|
|
HA
|
E:GLN1003
|
4.0
|
86.0
|
1.0
|
|
N
|
E:ASP1006
|
4.0
|
84.8
|
1.0
|
|
OD1
|
E:ASP879
|
4.1
|
84.9
|
1.0
|
|
CB
|
E:ASP1000
|
4.1
|
95.2
|
1.0
|
|
HB2
|
E:ASP879
|
4.1
|
85.7
|
1.0
|
|
N
|
E:ASP1000
|
4.1
|
93.9
|
1.0
|
|
CA
|
E:ILE1002
|
4.2
|
78.9
|
1.0
|
|
CA
|
E:ASP1006
|
4.2
|
83.0
|
1.0
|
|
H
|
E:ILE1002
|
4.2
|
87.0
|
1.0
|
|
CB
|
E:ASP1006
|
4.3
|
84.1
|
1.0
|
|
CB
|
E:ASP879
|
4.3
|
90.7
|
1.0
|
|
N
|
E:ILE1002
|
4.3
|
85.1
|
1.0
|
|
H
|
E:PHE999
|
4.3
|
84.1
|
1.0
|
|
HB3
|
E:ASP1000
|
4.3
|
94.3
|
1.0
|
|
H
|
E:ASP1006
|
4.3
|
88.1
|
1.0
|
|
HD22
|
E:ASN998
|
4.3
|
84.7
|
1.0
|
|
CB
|
E:ILE1002
|
4.4
|
86.5
|
1.0
|
|
N
|
E:GLN1003
|
4.4
|
80.5
|
1.0
|
|
CB
|
E:ASN1005
|
4.4
|
81.5
|
1.0
|
|
N
|
E:ASN998
|
4.4
|
77.0
|
1.0
|
|
N
|
E:ASN1005
|
4.5
|
80.7
|
1.0
|
|
CA
|
E:ASN1005
|
4.5
|
77.0
|
1.0
|
|
HB3
|
E:ASP879
|
4.5
|
86.0
|
1.0
|
|
CB
|
E:ASN998
|
4.5
|
77.0
|
1.0
|
|
CA
|
E:GLN1003
|
4.5
|
81.9
|
1.0
|
|
CA
|
E:ASP1000
|
4.6
|
92.3
|
1.0
|
|
HD22
|
E:ASN1005
|
4.6
|
85.1
|
1.0
|
|
N
|
E:PHE999
|
4.6
|
73.1
|
1.0
|
|
CG2
|
E:ILE1002
|
4.6
|
85.8
|
1.0
|
|
H
|
E:GLY1001
|
4.7
|
86.8
|
1.0
|
|
HB2
|
E:ASP1006
|
4.7
|
87.5
|
1.0
|
|
C
|
E:GLN1003
|
4.7
|
84.3
|
1.0
|
|
HB2
|
E:ASP1000
|
4.7
|
93.7
|
1.0
|
|
N
|
E:GLY1001
|
4.8
|
84.9
|
1.0
|
|
CA
|
E:ASN998
|
4.8
|
76.4
|
1.0
|
|
HB2
|
E:ASN1005
|
4.9
|
84.2
|
1.0
|
|
C
|
E:ASP1000
|
4.9
|
89.7
|
1.0
|
|
C
|
E:ASN998
|
4.9
|
75.7
|
1.0
|
|
HB2
|
E:ASN998
|
4.9
|
83.5
|
1.0
|
|
O
|
E:GLN1003
|
5.0
|
92.4
|
1.0
|
|
HB3
|
E:ASP1006
|
5.0
|
87.7
|
1.0
|
|
C
|
E:GLY1001
|
5.0
|
88.3
|
1.0
|
|
HA3
|
E:GLY997
|
5.0
|
77.9
|
1.0
|
|
Calcium binding site 5 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 5 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1206
b:138.8
occ:1.00
|
HD21
|
E:ASN166
|
1.9
|
100.9
|
1.0
|
|
OD1
|
E:ASP172
|
2.1
|
106.4
|
1.0
|
|
OD1
|
E:ASP171
|
2.1
|
116.8
|
1.0
|
|
OD1
|
E:ASN164
|
2.1
|
103.4
|
1.0
|
|
OD1
|
E:ASN166
|
2.2
|
107.9
|
1.0
|
|
OD2
|
E:ASP47
|
2.2
|
106.5
|
1.0
|
|
ND2
|
E:ASN166
|
2.3
|
100.0
|
1.0
|
|
CG
|
E:ASN166
|
2.5
|
100.5
|
1.0
|
|
O
|
E:PHE168
|
2.6
|
106.9
|
1.0
|
|
HD22
|
E:ASN166
|
3.1
|
100.2
|
1.0
|
|
CG
|
E:ASP171
|
3.1
|
112.5
|
1.0
|
|
CG
|
E:ASN164
|
3.1
|
100.2
|
1.0
|
|
CG
|
E:ASP172
|
3.2
|
106.2
|
1.0
|
|
CG
|
E:ASP47
|
3.3
|
101.0
|
1.0
|
|
HD21
|
E:ASN164
|
3.4
|
97.5
|
1.0
|
|
H
|
E:ASN166
|
3.4
|
100.4
|
1.0
|
|
OD2
|
E:ASP171
|
3.5
|
109.5
|
1.0
|
|
ND2
|
E:ASN164
|
3.6
|
101.8
|
1.0
|
|
HA
|
E:ASP172
|
3.7
|
104.8
|
1.0
|
|
C
|
E:PHE168
|
3.7
|
102.5
|
1.0
|
|
HB2
|
E:PHE168
|
3.8
|
106.8
|
1.0
|
|
CB
|
E:ASN166
|
3.9
|
95.0
|
1.0
|
|
OD2
|
E:ASP172
|
3.9
|
109.2
|
1.0
|
|
O
|
E:ASN164
|
4.0
|
99.5
|
1.0
|
|
N
|
E:ASP172
|
4.0
|
101.5
|
1.0
|
|
OD1
|
E:ASP47
|
4.1
|
100.3
|
1.0
|
|
N
|
E:ASN166
|
4.1
|
100.0
|
1.0
|
|
C
|
E:ASP171
|
4.1
|
109.7
|
1.0
|
|
CA
|
E:ASP172
|
4.2
|
103.9
|
1.0
|
|
HB2
|
E:ASP47
|
4.2
|
96.5
|
1.0
|
|
H
|
E:ASP171
|
4.2
|
111.2
|
1.0
|
|
H
|
E:PHE168
|
4.2
|
106.3
|
1.0
|
|
CB
|
E:ASP47
|
4.3
|
94.5
|
1.0
|
|
CB
|
E:ASP172
|
4.3
|
102.7
|
1.0
|
|
H
|
E:ASP172
|
4.3
|
104.7
|
1.0
|
|
O
|
E:ASP171
|
4.3
|
111.3
|
1.0
|
|
CB
|
E:ASN164
|
4.3
|
89.7
|
1.0
|
|
HA
|
E:ALA169
|
4.3
|
105.8
|
1.0
|
|
HB3
|
E:ASN166
|
4.3
|
99.0
|
1.0
|
|
CA
|
E:ASN166
|
4.3
|
98.3
|
1.0
|
|
HB3
|
E:ASP47
|
4.4
|
95.7
|
1.0
|
|
C
|
E:ASN164
|
4.4
|
97.1
|
1.0
|
|
CB
|
E:ASP171
|
4.4
|
112.6
|
1.0
|
|
HB2
|
E:ASN164
|
4.4
|
95.6
|
1.0
|
|
N
|
E:PHE168
|
4.4
|
102.9
|
1.0
|
|
C
|
E:ASN166
|
4.4
|
102.9
|
1.0
|
|
HD22
|
E:ASN164
|
4.4
|
97.1
|
1.0
|
|
HB2
|
E:ASN166
|
4.5
|
99.7
|
1.0
|
|
O
|
E:ASN166
|
4.5
|
104.4
|
1.0
|
|
CA
|
E:PHE168
|
4.5
|
103.6
|
1.0
|
|
CB
|
E:PHE168
|
4.6
|
106.1
|
1.0
|
|
CA
|
E:ASP171
|
4.6
|
112.0
|
1.0
|
|
H
|
E:ASN164
|
4.6
|
96.2
|
1.0
|
|
N
|
E:ASP171
|
4.7
|
111.4
|
1.0
|
|
HB2
|
E:ASP172
|
4.7
|
104.0
|
1.0
|
|
HB2
|
E:ASP171
|
4.8
|
111.3
|
1.0
|
|
CA
|
E:ASN164
|
4.8
|
91.4
|
1.0
|
|
N
|
E:ALA169
|
4.8
|
102.9
|
1.0
|
|
N
|
E:ASN164
|
4.9
|
94.6
|
1.0
|
|
CA
|
E:ALA169
|
5.0
|
106.7
|
1.0
|
|
N
|
E:PHE165
|
5.0
|
93.5
|
1.0
|
|
Calcium binding site 6 out
of 6 in 7zwh
Go back to
Calcium Binding Sites List in 7zwh
Calcium binding site 6 out
of 6 in the Vwf Tubules of D1D2 and D'D3A1 Domains
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Vwf Tubules of D1D2 and D'D3A1 Domains within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1207
b:147.4
occ:1.00
|
H
|
E:PHE399
|
1.7
|
84.2
|
1.0
|
|
HB2
|
E:PHE399
|
1.9
|
84.0
|
1.0
|
|
HD2
|
E:PHE399
|
2.1
|
84.0
|
1.0
|
|
O
|
E:CYS524
|
2.2
|
100.2
|
1.0
|
|
N
|
E:PHE399
|
2.3
|
83.0
|
1.0
|
|
CB
|
E:PHE399
|
2.5
|
82.8
|
1.0
|
|
O
|
E:ASN526
|
2.5
|
106.4
|
1.0
|
|
CD2
|
E:PHE399
|
2.6
|
81.8
|
1.0
|
|
H
|
E:ASP400
|
2.8
|
84.9
|
1.0
|
|
CG
|
E:PHE399
|
2.8
|
79.3
|
1.0
|
|
CA
|
E:PHE399
|
2.9
|
81.0
|
1.0
|
|
HB2
|
E:SER398
|
2.9
|
78.8
|
1.0
|
|
HB3
|
E:CYS524
|
3.2
|
96.8
|
1.0
|
|
C
|
E:CYS524
|
3.3
|
96.1
|
1.0
|
|
HB3
|
E:PHE399
|
3.4
|
84.3
|
1.0
|
|
HG
|
E:SER398
|
3.4
|
80.2
|
1.0
|
|
C
|
E:SER398
|
3.4
|
75.0
|
1.0
|
|
N
|
E:ASP400
|
3.4
|
84.8
|
1.0
|
|
CB
|
E:SER398
|
3.6
|
73.9
|
1.0
|
|
HA
|
E:TYR527
|
3.7
|
83.5
|
1.0
|
|
HA
|
E:SER398
|
3.7
|
78.4
|
1.0
|
|
C
|
E:PHE399
|
3.7
|
86.9
|
1.0
|
|
C
|
E:ASN526
|
3.7
|
94.9
|
1.0
|
|
HA
|
E:PHE399
|
3.7
|
83.5
|
1.0
|
|
CE2
|
E:PHE399
|
3.7
|
83.0
|
1.0
|
|
O
|
E:GLY525
|
3.7
|
91.3
|
1.0
|
|
CA
|
E:SER398
|
3.8
|
69.1
|
1.0
|
|
OG
|
E:SER398
|
4.0
|
90.5
|
1.0
|
|
CB
|
E:CYS524
|
4.0
|
99.7
|
1.0
|
|
C
|
E:GLY525
|
4.0
|
89.6
|
1.0
|
|
CD1
|
E:PHE399
|
4.0
|
79.3
|
1.0
|
|
HE2
|
E:PHE399
|
4.0
|
84.5
|
1.0
|
|
CA
|
E:CYS524
|
4.1
|
91.8
|
1.0
|
|
OD2
|
E:ASP534
|
4.1
|
116.5
|
1.0
|
|
HA
|
E:CYS524
|
4.1
|
95.7
|
1.0
|
|
HB2
|
E:CYS524
|
4.2
|
96.9
|
1.0
|
|
HB2
|
E:TYR527
|
4.2
|
84.6
|
1.0
|
|
N
|
E:GLY525
|
4.3
|
93.0
|
1.0
|
|
HA3
|
E:GLY525
|
4.4
|
91.1
|
1.0
|
|
CA
|
E:TYR527
|
4.4
|
74.4
|
1.0
|
|
N
|
E:ASN526
|
4.4
|
93.5
|
1.0
|
|
O
|
E:SER398
|
4.5
|
82.6
|
1.0
|
|
N
|
E:TYR527
|
4.5
|
77.3
|
1.0
|
|
CA
|
E:GLY525
|
4.5
|
89.3
|
1.0
|
|
HB3
|
E:SER398
|
4.5
|
78.5
|
1.0
|
|
HD1
|
E:PHE399
|
4.5
|
84.0
|
1.0
|
|
HD1
|
E:TYR527
|
4.5
|
84.2
|
1.0
|
|
CG
|
E:ASP400
|
4.6
|
87.8
|
1.0
|
|
CA
|
E:ASN526
|
4.7
|
90.6
|
1.0
|
|
CZ
|
E:PHE399
|
4.7
|
80.2
|
1.0
|
|
CA
|
E:ASP400
|
4.7
|
80.0
|
1.0
|
|
OD2
|
E:ASP400
|
4.7
|
79.3
|
1.0
|
|
OD1
|
E:ASP400
|
4.7
|
93.0
|
1.0
|
|
HB2
|
E:ASP400
|
4.8
|
85.2
|
1.0
|
|
CB
|
E:TYR527
|
4.8
|
79.4
|
1.0
|
|
CG
|
E:ASP534
|
4.8
|
108.3
|
1.0
|
|
HG1
|
E:THR520
|
4.8
|
99.2
|
1.0
|
|
CE1
|
E:PHE399
|
4.8
|
80.2
|
1.0
|
|
O
|
E:PHE399
|
4.9
|
89.1
|
1.0
|
|
OG1
|
E:THR520
|
4.9
|
104.1
|
1.0
|
|
H
|
E:ASN526
|
4.9
|
93.9
|
1.0
|
|
CB
|
E:ASP400
|
5.0
|
82.5
|
1.0
|
|
OD1
|
E:ASP534
|
5.0
|
98.6
|
1.0
|
|
Reference:
G.Javitt,
N.Yeshaya,
L.Khmelnitsky,
D.Fass.
Assembly of Von Willebrand Factor Tubules with in Vivo Helical Parameters Requires A1 Domain Insertion. Blood 2022.
ISSN: ESSN 1528-0020
PubMed: 36179246
DOI: 10.1182/BLOOD.2022017153
Page generated: Fri Jul 19 06:38:19 2024
|
