Calcium in PDB 7zyb: Bekdgf with Ca

The structure of Bekdgf with Ca, PDB code: 7zyb was solved by F.Fredslund, D.Teze, D.H.Welner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.03 / 1.50
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	47.374, 47.374, 175.859, 90, 90, 120
R / Rfree (%)	17.3 / 20.1

The binding sites of Calcium atom in the Bekdgf with Ca (pdb code 7zyb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Bekdgf with Ca, PDB code: 7zyb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Bekdgf with Ca


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bekdgf with Ca within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:43.9 occ:0.25 OE1 A:GLN33 2.4 22.2 1.0 CD A:GLN33 3.3 21.4 1.0 HE22 A:GLN33 3.5 28.1 1.0 NE2 A:GLN33 3.8 23.4 1.0 HG A:SER105 3.8 28.0 1.0 OG A:SER105 3.9 23.3 1.0 HB3 A:GLN33 4.0 24.9 1.0 CG A:GLN33 4.5 21.8 1.0 HE21 A:GLN33 4.6 28.1 1.0 CB A:GLN33 4.7 20.8 1.0 HG3 A:GLN33 4.7 26.2 1.0 HA A:GLN33 4.9 25.1 1.0

Calcium binding site 2 out of 2 in the Bekdgf with Ca


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bekdgf with Ca within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:89.4 occ:0.50 NE2 A:HIS50 2.4 49.2 1.0 OE1 A:GLN56 2.4 33.2 1.0 NE2 A:HIS90 2.4 41.4 1.0 NE2 A:HIS52 2.5 34.1 1.0 CE1 A:HIS50 3.0 46.7 1.0 HE1 A:HIS50 3.0 56.1 1.0 O A:HOH355 3.1 48.1 1.0 HE1 A:PHE104 3.2 35.4 1.0 CE1 A:HIS90 3.3 41.2 1.0 HO1 A:GOL201 3.3 60.0 1.0 CD2 A:HIS52 3.4 39.7 1.0 HE1 A:HIS90 3.4 49.5 1.0 CD2 A:HIS90 3.4 36.9 1.0 HD2 A:HIS52 3.4 47.7 1.0 CD A:GLN56 3.4 33.3 1.0 CD2 A:HIS50 3.5 56.4 1.0 HH12 A:ARG108 3.5 47.6 1.0 HE21 A:GLN56 3.6 40.4 1.0 CE1 A:HIS52 3.6 33.8 1.0 HD2 A:HIS90 3.6 44.3 1.0 O1 A:GOL201 3.7 49.9 1.0 HE1 A:HIS52 3.8 40.6 1.0 HD2 A:HIS50 3.8 67.7 1.0 HZ A:PHE104 3.9 34.2 1.0 NE2 A:GLN56 3.9 33.6 1.0 CE1 A:PHE104 4.0 29.5 1.0 NH1 A:ARG108 4.1 39.6 1.0 HH11 A:ARG108 4.1 47.6 1.0 ND1 A:HIS50 4.1 54.1 1.0 CZ A:PHE104 4.4 28.5 1.0 CG A:HIS50 4.4 45.4 1.0 H31 A:GOL201 4.4 52.9 1.0 ND1 A:HIS90 4.4 36.9 1.0 CG A:HIS90 4.5 34.2 1.0 CG A:HIS52 4.6 36.2 1.0 HB2 A:GLN56 4.7 32.6 1.0 ND1 A:HIS52 4.7 32.3 1.0 CG A:GLN56 4.7 27.1 1.0 HE22 A:GLN56 4.8 40.4 1.0 O A:HOH319 5.0 50.9 1.0 HG3 A:GLN56 5.0 32.5 1.0

F.Fredslund, D.Teze, D.H.Welner. Bekdgf with Ca To Be Published.