Calcium in PDB 7zyw: Crystal Structure of T2R-Ttl-PM534 Complex
Protein crystallography data
The structure of Crystal Structure of T2R-Ttl-PM534 Complex, PDB code: 7zyw
was solved by
M.A.Oliva,
J.F.Diaz,
C.Cuevas,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.66 /
2.45
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
104.803,
158.026,
181.08,
90,
90,
90
|
R / Rfree (%)
|
21.9 /
24.4
|
Other elements in 7zyw:
The structure of Crystal Structure of T2R-Ttl-PM534 Complex also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of T2R-Ttl-PM534 Complex
(pdb code 7zyw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the
Crystal Structure of T2R-Ttl-PM534 Complex, PDB code: 7zyw:
Jump to Calcium binding site number:
1;
2;
3;
Calcium binding site 1 out
of 3 in 7zyw
Go back to
Calcium Binding Sites List in 7zyw
Calcium binding site 1 out
of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:83.8
occ:1.00
|
OD2
|
A:ASP39
|
2.3
|
96.8
|
1.0
|
OG1
|
A:THR41
|
2.3
|
90.1
|
1.0
|
O
|
A:HOH604
|
2.4
|
92.3
|
1.0
|
O
|
A:GLY44
|
2.4
|
80.5
|
1.0
|
OE2
|
A:GLU55
|
2.4
|
81.5
|
1.0
|
O
|
A:THR41
|
2.4
|
91.6
|
1.0
|
OD1
|
A:ASP39
|
2.4
|
105.7
|
1.0
|
OE1
|
A:GLU55
|
2.4
|
101.7
|
1.0
|
CG
|
A:ASP39
|
2.7
|
99.5
|
1.0
|
CD
|
A:GLU55
|
2.7
|
89.0
|
1.0
|
CB
|
A:THR41
|
3.3
|
103.7
|
1.0
|
C
|
A:THR41
|
3.4
|
102.9
|
1.0
|
HB
|
A:THR41
|
3.4
|
102.3
|
1.0
|
HA3
|
A:GLY45
|
3.5
|
114.4
|
1.0
|
HZ
|
A:PHE49
|
3.5
|
109.3
|
1.0
|
C
|
A:GLY44
|
3.6
|
87.7
|
1.0
|
H
|
A:THR41
|
3.6
|
97.1
|
1.0
|
CA
|
A:THR41
|
3.7
|
107.6
|
1.0
|
H
|
A:GLY44
|
3.8
|
97.3
|
1.0
|
N
|
A:THR41
|
4.0
|
98.3
|
1.0
|
HE2
|
A:HIS61
|
4.0
|
95.0
|
1.0
|
HD21
|
A:ASN50
|
4.0
|
93.3
|
1.0
|
CB
|
A:ASP39
|
4.2
|
91.7
|
1.0
|
CG
|
A:GLU55
|
4.3
|
83.5
|
1.0
|
CA
|
A:GLY45
|
4.3
|
114.7
|
1.0
|
CZ
|
A:PHE49
|
4.3
|
111.8
|
1.0
|
N
|
A:GLY45
|
4.4
|
118.4
|
1.0
|
N
|
A:GLY44
|
4.4
|
100.1
|
1.0
|
HE1
|
A:PHE49
|
4.5
|
101.4
|
1.0
|
OD1
|
A:ASN50
|
4.5
|
102.4
|
1.0
|
N
|
A:ILE42
|
4.6
|
92.4
|
1.0
|
HB2
|
A:ASP39
|
4.6
|
91.0
|
1.0
|
CA
|
A:GLY44
|
4.6
|
97.8
|
1.0
|
HB3
|
A:ASP39
|
4.6
|
91.0
|
1.0
|
HA
|
A:ILE42
|
4.6
|
91.9
|
1.0
|
OD2
|
A:ASP47
|
4.6
|
111.8
|
1.0
|
HG2
|
A:GLU55
|
4.6
|
83.0
|
1.0
|
HG3
|
A:GLU55
|
4.6
|
83.0
|
1.0
|
CG2
|
A:THR41
|
4.7
|
107.1
|
1.0
|
HA
|
A:THR41
|
4.7
|
105.9
|
1.0
|
NE2
|
A:HIS61
|
4.7
|
96.3
|
1.0
|
ND2
|
A:ASN50
|
4.8
|
94.7
|
1.0
|
HG21
|
A:THR41
|
4.8
|
105.6
|
1.0
|
CE1
|
A:PHE49
|
4.9
|
103.7
|
1.0
|
HA2
|
A:GLY45
|
4.9
|
114.4
|
1.0
|
H
|
A:GLY43
|
4.9
|
89.1
|
1.0
|
HA
|
A:ASP39
|
4.9
|
96.2
|
1.0
|
HB3
|
A:GLU55
|
4.9
|
94.8
|
1.0
|
HG23
|
A:THR41
|
4.9
|
105.6
|
1.0
|
H
|
A:LYS40
|
5.0
|
95.7
|
1.0
|
|
Calcium binding site 2 out
of 3 in 7zyw
Go back to
Calcium Binding Sites List in 7zyw
Calcium binding site 2 out
of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca507
b:84.6
occ:1.00
|
O
|
B:HOH610
|
2.3
|
78.1
|
1.0
|
OE1
|
B:GLU113
|
2.4
|
91.6
|
1.0
|
CD
|
B:GLU113
|
3.2
|
102.6
|
1.0
|
OE2
|
B:GLU113
|
3.3
|
111.4
|
1.0
|
OE1
|
B:GLU110
|
4.5
|
70.3
|
1.0
|
HG
|
B:SER97
|
4.6
|
103.0
|
1.0
|
CG
|
B:GLU113
|
4.7
|
85.1
|
1.0
|
HB2
|
B:GLU113
|
4.8
|
67.5
|
1.0
|
|
Calcium binding site 3 out
of 3 in 7zyw
Go back to
Calcium Binding Sites List in 7zyw
Calcium binding site 3 out
of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca503
b:70.2
occ:1.00
|
OE2
|
C:GLU55
|
2.3
|
68.5
|
1.0
|
O
|
C:THR41
|
2.4
|
76.0
|
1.0
|
O
|
C:HOH616
|
2.4
|
63.2
|
1.0
|
OG1
|
C:THR41
|
2.4
|
75.2
|
1.0
|
OD2
|
C:ASP39
|
2.4
|
57.9
|
1.0
|
OE1
|
C:GLU55
|
2.4
|
81.4
|
1.0
|
O
|
C:GLY44
|
2.4
|
75.5
|
1.0
|
OD1
|
C:ASP39
|
2.5
|
71.2
|
1.0
|
CD
|
C:GLU55
|
2.7
|
71.1
|
1.0
|
CG
|
C:ASP39
|
2.8
|
65.1
|
1.0
|
C
|
C:THR41
|
3.4
|
80.6
|
1.0
|
CB
|
C:THR41
|
3.5
|
82.5
|
1.0
|
HA3
|
C:GLY45
|
3.6
|
78.0
|
1.0
|
C
|
C:GLY44
|
3.6
|
74.8
|
1.0
|
H
|
C:THR41
|
3.7
|
83.8
|
1.0
|
HB
|
C:THR41
|
3.8
|
81.8
|
1.0
|
HE2
|
C:HIS61
|
3.9
|
78.5
|
1.0
|
CA
|
C:THR41
|
3.9
|
88.5
|
1.0
|
HZ
|
C:PHE49
|
3.9
|
81.5
|
1.0
|
H
|
C:GLY44
|
4.0
|
87.2
|
1.0
|
HD21
|
C:ASN50
|
4.1
|
68.9
|
1.0
|
N
|
C:THR41
|
4.1
|
84.9
|
1.0
|
HE1
|
C:PHE49
|
4.2
|
74.3
|
1.0
|
CG
|
C:GLU55
|
4.2
|
64.2
|
1.0
|
CB
|
C:ASP39
|
4.3
|
73.6
|
1.0
|
OD2
|
C:ASP47
|
4.3
|
99.5
|
1.0
|
O
|
C:HOH611
|
4.4
|
64.5
|
1.0
|
CA
|
C:GLY45
|
4.4
|
78.7
|
1.0
|
N
|
C:GLY45
|
4.5
|
79.2
|
1.0
|
OD1
|
C:ASN50
|
4.5
|
81.1
|
1.0
|
HA
|
C:ILE42
|
4.6
|
75.6
|
1.0
|
NE2
|
C:HIS61
|
4.6
|
79.9
|
1.0
|
HG2
|
C:GLU55
|
4.6
|
63.9
|
1.0
|
N
|
C:ILE42
|
4.6
|
78.1
|
1.0
|
N
|
C:GLY44
|
4.6
|
88.3
|
1.0
|
HG3
|
C:GLU55
|
4.6
|
63.9
|
1.0
|
CZ
|
C:PHE49
|
4.6
|
83.0
|
1.0
|
CA
|
C:GLY44
|
4.6
|
77.5
|
1.0
|
HB3
|
C:ASP39
|
4.6
|
73.6
|
1.0
|
HB2
|
C:ASP39
|
4.7
|
73.6
|
1.0
|
CE1
|
C:PHE49
|
4.7
|
75.5
|
1.0
|
CG2
|
C:THR41
|
4.8
|
81.8
|
1.0
|
HA
|
C:THR41
|
4.8
|
87.5
|
1.0
|
ND2
|
C:ASN50
|
4.8
|
70.1
|
1.0
|
HA2
|
C:GLY44
|
4.8
|
76.8
|
1.0
|
HG23
|
C:THR41
|
4.9
|
80.9
|
1.0
|
HG21
|
C:THR41
|
5.0
|
80.9
|
1.0
|
HA2
|
C:GLY45
|
5.0
|
78.0
|
1.0
|
HA
|
C:ASP39
|
5.0
|
82.9
|
1.0
|
HB3
|
C:GLU55
|
5.0
|
64.3
|
1.0
|
|
Reference:
M.A.Oliva,
J.F.Diaz,
C.Cuevas.
Structure of T2R-Ttl-PM534 Complex To Be Published.
Page generated: Fri Jul 19 06:40:05 2024
|