Atomistry » Calcium » PDB 7zbv-830c » 7zyw
Atomistry »
  Calcium »
    PDB 7zbv-830c »
      7zyw »

Calcium in PDB 7zyw: Crystal Structure of T2R-Ttl-PM534 Complex

Protein crystallography data

The structure of Crystal Structure of T2R-Ttl-PM534 Complex, PDB code: 7zyw was solved by M.A.Oliva, J.F.Diaz, C.Cuevas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.66 / 2.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 104.803, 158.026, 181.08, 90, 90, 90
R / Rfree (%) 21.9 / 24.4

Other elements in 7zyw:

The structure of Crystal Structure of T2R-Ttl-PM534 Complex also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of T2R-Ttl-PM534 Complex (pdb code 7zyw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of T2R-Ttl-PM534 Complex, PDB code: 7zyw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 7zyw

Go back to Calcium Binding Sites List in 7zyw
Calcium binding site 1 out of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:83.8
occ:1.00
OD2 A:ASP39 2.3 96.8 1.0
OG1 A:THR41 2.3 90.1 1.0
O A:HOH604 2.4 92.3 1.0
O A:GLY44 2.4 80.5 1.0
OE2 A:GLU55 2.4 81.5 1.0
O A:THR41 2.4 91.6 1.0
OD1 A:ASP39 2.4 105.7 1.0
OE1 A:GLU55 2.4 101.7 1.0
CG A:ASP39 2.7 99.5 1.0
CD A:GLU55 2.7 89.0 1.0
CB A:THR41 3.3 103.7 1.0
C A:THR41 3.4 102.9 1.0
HB A:THR41 3.4 102.3 1.0
HA3 A:GLY45 3.5 114.4 1.0
HZ A:PHE49 3.5 109.3 1.0
C A:GLY44 3.6 87.7 1.0
H A:THR41 3.6 97.1 1.0
CA A:THR41 3.7 107.6 1.0
H A:GLY44 3.8 97.3 1.0
N A:THR41 4.0 98.3 1.0
HE2 A:HIS61 4.0 95.0 1.0
HD21 A:ASN50 4.0 93.3 1.0
CB A:ASP39 4.2 91.7 1.0
CG A:GLU55 4.3 83.5 1.0
CA A:GLY45 4.3 114.7 1.0
CZ A:PHE49 4.3 111.8 1.0
N A:GLY45 4.4 118.4 1.0
N A:GLY44 4.4 100.1 1.0
HE1 A:PHE49 4.5 101.4 1.0
OD1 A:ASN50 4.5 102.4 1.0
N A:ILE42 4.6 92.4 1.0
HB2 A:ASP39 4.6 91.0 1.0
CA A:GLY44 4.6 97.8 1.0
HB3 A:ASP39 4.6 91.0 1.0
HA A:ILE42 4.6 91.9 1.0
OD2 A:ASP47 4.6 111.8 1.0
HG2 A:GLU55 4.6 83.0 1.0
HG3 A:GLU55 4.6 83.0 1.0
CG2 A:THR41 4.7 107.1 1.0
HA A:THR41 4.7 105.9 1.0
NE2 A:HIS61 4.7 96.3 1.0
ND2 A:ASN50 4.8 94.7 1.0
HG21 A:THR41 4.8 105.6 1.0
CE1 A:PHE49 4.9 103.7 1.0
HA2 A:GLY45 4.9 114.4 1.0
H A:GLY43 4.9 89.1 1.0
HA A:ASP39 4.9 96.2 1.0
HB3 A:GLU55 4.9 94.8 1.0
HG23 A:THR41 4.9 105.6 1.0
H A:LYS40 5.0 95.7 1.0

Calcium binding site 2 out of 3 in 7zyw

Go back to Calcium Binding Sites List in 7zyw
Calcium binding site 2 out of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca507

b:84.6
occ:1.00
O B:HOH610 2.3 78.1 1.0
OE1 B:GLU113 2.4 91.6 1.0
CD B:GLU113 3.2 102.6 1.0
OE2 B:GLU113 3.3 111.4 1.0
OE1 B:GLU110 4.5 70.3 1.0
HG B:SER97 4.6 103.0 1.0
CG B:GLU113 4.7 85.1 1.0
HB2 B:GLU113 4.8 67.5 1.0

Calcium binding site 3 out of 3 in 7zyw

Go back to Calcium Binding Sites List in 7zyw
Calcium binding site 3 out of 3 in the Crystal Structure of T2R-Ttl-PM534 Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of T2R-Ttl-PM534 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca503

b:70.2
occ:1.00
OE2 C:GLU55 2.3 68.5 1.0
O C:THR41 2.4 76.0 1.0
O C:HOH616 2.4 63.2 1.0
OG1 C:THR41 2.4 75.2 1.0
OD2 C:ASP39 2.4 57.9 1.0
OE1 C:GLU55 2.4 81.4 1.0
O C:GLY44 2.4 75.5 1.0
OD1 C:ASP39 2.5 71.2 1.0
CD C:GLU55 2.7 71.1 1.0
CG C:ASP39 2.8 65.1 1.0
C C:THR41 3.4 80.6 1.0
CB C:THR41 3.5 82.5 1.0
HA3 C:GLY45 3.6 78.0 1.0
C C:GLY44 3.6 74.8 1.0
H C:THR41 3.7 83.8 1.0
HB C:THR41 3.8 81.8 1.0
HE2 C:HIS61 3.9 78.5 1.0
CA C:THR41 3.9 88.5 1.0
HZ C:PHE49 3.9 81.5 1.0
H C:GLY44 4.0 87.2 1.0
HD21 C:ASN50 4.1 68.9 1.0
N C:THR41 4.1 84.9 1.0
HE1 C:PHE49 4.2 74.3 1.0
CG C:GLU55 4.2 64.2 1.0
CB C:ASP39 4.3 73.6 1.0
OD2 C:ASP47 4.3 99.5 1.0
O C:HOH611 4.4 64.5 1.0
CA C:GLY45 4.4 78.7 1.0
N C:GLY45 4.5 79.2 1.0
OD1 C:ASN50 4.5 81.1 1.0
HA C:ILE42 4.6 75.6 1.0
NE2 C:HIS61 4.6 79.9 1.0
HG2 C:GLU55 4.6 63.9 1.0
N C:ILE42 4.6 78.1 1.0
N C:GLY44 4.6 88.3 1.0
HG3 C:GLU55 4.6 63.9 1.0
CZ C:PHE49 4.6 83.0 1.0
CA C:GLY44 4.6 77.5 1.0
HB3 C:ASP39 4.6 73.6 1.0
HB2 C:ASP39 4.7 73.6 1.0
CE1 C:PHE49 4.7 75.5 1.0
CG2 C:THR41 4.8 81.8 1.0
HA C:THR41 4.8 87.5 1.0
ND2 C:ASN50 4.8 70.1 1.0
HA2 C:GLY44 4.8 76.8 1.0
HG23 C:THR41 4.9 80.9 1.0
HG21 C:THR41 5.0 80.9 1.0
HA2 C:GLY45 5.0 78.0 1.0
HA C:ASP39 5.0 82.9 1.0
HB3 C:GLU55 5.0 64.3 1.0

Reference:

M.A.Oliva, J.F.Diaz, C.Cuevas. Structure of T2R-Ttl-PM534 Complex To Be Published.
Page generated: Fri Jul 19 06:40:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy