Calcium in PDB 8a45: Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Enzymatic activity of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
All present enzymatic activity of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate:
2.2.1.7;
Protein crystallography data
The structure of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate, PDB code: 8a45
was solved by
R.Hamid,
A.Hirsch,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.59 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
117.12,
138.013,
231.626,
90,
90,
90
|
R / Rfree (%)
|
18.3 /
21.7
|
Other elements in 8a45:
The structure of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
(pdb code 8a45). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate, PDB code: 8a45:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 1 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca703
b:53.5
occ:1.00
|
O
|
A:HOH840
|
2.5
|
36.4
|
1.0
|
OD2
|
A:ASP526
|
2.7
|
40.5
|
1.0
|
O
|
A:HOH1120
|
2.8
|
47.6
|
1.0
|
OD1
|
A:ASP526
|
2.8
|
33.3
|
1.0
|
O
|
A:HOH1127
|
2.8
|
44.7
|
1.0
|
O
|
A:HOH1192
|
2.9
|
49.7
|
1.0
|
CG
|
A:ASP526
|
3.1
|
36.5
|
1.0
|
HH22
|
A:ARG501
|
3.9
|
42.7
|
1.0
|
HA2
|
A:GLY503
|
4.1
|
37.9
|
1.0
|
HH12
|
A:ARG501
|
4.4
|
33.1
|
1.0
|
CB
|
A:ASP526
|
4.6
|
29.6
|
1.0
|
NH2
|
A:ARG501
|
4.7
|
35.6
|
1.0
|
O
|
A:ARG502
|
4.7
|
29.8
|
1.0
|
HB2
|
A:ASP526
|
4.9
|
35.5
|
1.0
|
O
|
A:HOH852
|
4.9
|
37.5
|
1.0
|
|
Calcium binding site 2 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 2 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca704
b:38.3
occ:1.00
|
O
|
A:TYR465
|
2.1
|
22.7
|
1.0
|
OD1
|
A:ASP413
|
2.3
|
27.6
|
1.0
|
O
|
A:PHE467
|
2.5
|
25.6
|
1.0
|
OD2
|
A:ASP413
|
2.6
|
29.3
|
1.0
|
O
|
A:HOH1030
|
2.6
|
38.2
|
1.0
|
CG
|
A:ASP413
|
2.8
|
27.6
|
1.0
|
O
|
A:HOH1007
|
2.8
|
32.0
|
1.0
|
C
|
A:TYR465
|
3.3
|
25.0
|
1.0
|
HA
|
A:ASP468
|
3.5
|
32.9
|
1.0
|
O
|
A:HOH857
|
3.5
|
23.9
|
1.0
|
C
|
A:PHE467
|
3.6
|
27.0
|
1.0
|
HD2
|
A:LYS386
|
3.6
|
36.7
|
1.0
|
HA
|
A:TYR465
|
3.7
|
27.9
|
1.0
|
H
|
A:GLY469
|
3.9
|
32.0
|
1.0
|
O
|
A:GLY464
|
4.0
|
20.7
|
1.0
|
CA
|
A:TYR465
|
4.1
|
23.2
|
1.0
|
C
|
A:LEU466
|
4.1
|
26.6
|
1.0
|
HA
|
A:LEU466
|
4.1
|
31.6
|
1.0
|
O
|
A:LEU466
|
4.2
|
24.9
|
1.0
|
HZ3
|
A:LYS386
|
4.2
|
40.8
|
1.0
|
N
|
A:LEU466
|
4.2
|
25.5
|
1.0
|
O
|
A:HOH861
|
4.2
|
23.0
|
1.0
|
CB
|
A:ASP413
|
4.3
|
21.8
|
1.0
|
N
|
A:PHE467
|
4.3
|
25.2
|
1.0
|
CA
|
A:ASP468
|
4.3
|
27.3
|
1.0
|
N
|
A:ASP468
|
4.4
|
24.8
|
1.0
|
CA
|
A:LEU466
|
4.4
|
26.3
|
1.0
|
CD
|
A:LYS386
|
4.5
|
30.5
|
1.0
|
CA
|
A:PHE467
|
4.5
|
26.8
|
1.0
|
H
|
A:PHE467
|
4.6
|
30.3
|
1.0
|
N
|
A:GLY469
|
4.6
|
26.6
|
1.0
|
HB3
|
A:ASP413
|
4.7
|
26.2
|
1.0
|
HB2
|
A:ASP413
|
4.7
|
26.2
|
1.0
|
O
|
A:HOH1124
|
4.7
|
42.8
|
1.0
|
HA
|
A:ASP413
|
4.8
|
27.8
|
1.0
|
HE3
|
A:LYS386
|
4.8
|
37.2
|
1.0
|
HB3
|
A:LYS386
|
4.9
|
28.6
|
1.0
|
O
|
A:GLY469
|
4.9
|
22.1
|
1.0
|
CG
|
A:TYR465
|
4.9
|
23.8
|
1.0
|
CD1
|
A:TYR465
|
4.9
|
23.8
|
1.0
|
HB3
|
A:PHE467
|
4.9
|
29.5
|
1.0
|
C
|
A:GLY464
|
4.9
|
22.9
|
1.0
|
CA
|
A:ASP413
|
4.9
|
23.1
|
1.0
|
NZ
|
A:LYS386
|
5.0
|
34.0
|
1.0
|
HD1
|
A:TYR465
|
5.0
|
28.6
|
1.0
|
|
Calcium binding site 3 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 3 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca705
b:56.6
occ:1.00
|
O
|
A:HOH1172
|
2.4
|
31.4
|
1.0
|
O
|
A:HOH832
|
2.7
|
29.6
|
1.0
|
OE1
|
A:GLU558
|
2.8
|
25.1
|
1.0
|
HD11
|
A:LEU601
|
2.9
|
33.8
|
1.0
|
HG21
|
A:VAL513
|
2.9
|
27.3
|
1.0
|
O
|
A:HOH1154
|
2.9
|
26.3
|
1.0
|
O
|
A:HOH912
|
3.2
|
25.9
|
1.0
|
HD21
|
A:LEU601
|
3.4
|
36.3
|
1.0
|
OE2
|
A:GLU558
|
3.5
|
25.9
|
1.0
|
CD
|
A:GLU558
|
3.5
|
26.0
|
1.0
|
CG2
|
A:VAL513
|
3.8
|
22.7
|
1.0
|
CD1
|
A:LEU601
|
3.8
|
28.1
|
1.0
|
HG23
|
A:VAL513
|
3.9
|
27.3
|
1.0
|
HG3
|
A:PRO476
|
3.9
|
24.7
|
1.0
|
NE2
|
A:GLN514
|
3.9
|
24.4
|
1.0
|
HB3
|
A:PRO476
|
4.0
|
24.1
|
1.0
|
HD13
|
A:LEU601
|
4.0
|
33.8
|
1.0
|
HB2
|
A:PRO476
|
4.0
|
24.1
|
1.0
|
HG22
|
A:VAL513
|
4.1
|
27.3
|
1.0
|
CD2
|
A:LEU601
|
4.2
|
30.2
|
1.0
|
O
|
A:HOH1180
|
4.2
|
34.9
|
1.0
|
HD22
|
A:LEU601
|
4.3
|
36.3
|
1.0
|
CB
|
A:PRO476
|
4.3
|
20.0
|
1.0
|
O
|
A:HOH1186
|
4.4
|
37.6
|
1.0
|
HD12
|
A:LEU601
|
4.5
|
33.8
|
1.0
|
CG
|
A:PRO476
|
4.5
|
20.6
|
1.0
|
O
|
A:HOH850
|
4.6
|
23.3
|
1.0
|
CG
|
A:LEU601
|
4.6
|
30.0
|
1.0
|
O
|
A:HOH833
|
4.6
|
24.3
|
1.0
|
HB
|
A:VAL513
|
4.8
|
29.1
|
1.0
|
HG
|
A:LEU601
|
4.8
|
36.0
|
1.0
|
HG2
|
A:PRO476
|
4.9
|
24.7
|
1.0
|
CG
|
A:GLU558
|
4.9
|
23.5
|
1.0
|
CB
|
A:VAL513
|
4.9
|
24.2
|
1.0
|
HD23
|
A:LEU601
|
5.0
|
36.3
|
1.0
|
|
Calcium binding site 4 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 4 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca703
b:47.6
occ:1.00
|
O
|
D:ALA302
|
2.3
|
36.7
|
1.0
|
O
|
D:GLY299
|
2.4
|
37.7
|
1.0
|
O
|
D:HOH1074
|
2.4
|
43.8
|
1.0
|
O
|
D:HOH1071
|
2.5
|
45.5
|
1.0
|
O
|
D:HOH1019
|
2.6
|
36.7
|
1.0
|
O
|
D:HOH1095
|
2.9
|
44.4
|
1.0
|
O
|
D:HOH1001
|
2.9
|
46.8
|
1.0
|
HA
|
D:ILE303
|
3.5
|
49.4
|
1.0
|
C
|
D:ALA302
|
3.5
|
38.4
|
1.0
|
C
|
D:GLY299
|
3.5
|
36.6
|
1.0
|
H
|
D:ALA302
|
3.6
|
40.1
|
1.0
|
HA2
|
D:GLY299
|
3.8
|
43.0
|
1.0
|
HG22
|
D:ILE303
|
4.0
|
44.3
|
1.0
|
HA
|
D:TYR300
|
4.1
|
44.0
|
1.0
|
CA
|
D:GLY299
|
4.2
|
35.8
|
1.0
|
N
|
D:ALA302
|
4.3
|
33.3
|
1.0
|
CA
|
D:ILE303
|
4.3
|
41.1
|
1.0
|
O
|
D:HOH1115
|
4.4
|
55.1
|
1.0
|
N
|
D:ILE303
|
4.4
|
36.7
|
1.0
|
CA
|
D:ALA302
|
4.5
|
36.2
|
1.0
|
HB3
|
D:ALA302
|
4.5
|
38.9
|
1.0
|
N
|
D:TYR300
|
4.5
|
35.5
|
1.0
|
HA3
|
D:GLY299
|
4.6
|
43.0
|
1.0
|
O
|
D:HOH975
|
4.7
|
42.6
|
1.0
|
CA
|
D:TYR300
|
4.7
|
36.7
|
1.0
|
H
|
D:HIS301
|
4.8
|
40.7
|
1.0
|
CG2
|
D:ILE303
|
4.9
|
36.9
|
1.0
|
O
|
D:ILE298
|
5.0
|
36.4
|
1.0
|
|
Calcium binding site 5 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 5 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca704
b:39.3
occ:1.00
|
OD2
|
D:ASP488
|
2.4
|
31.8
|
1.0
|
OD2
|
D:ASP486
|
2.4
|
28.1
|
1.0
|
O
|
D:HOH851
|
2.6
|
49.6
|
1.0
|
OD1
|
D:ASP486
|
3.1
|
29.6
|
1.0
|
CG
|
D:ASP486
|
3.1
|
29.6
|
1.0
|
CG
|
D:ASP488
|
3.4
|
31.9
|
1.0
|
CB
|
D:ASP488
|
3.8
|
28.2
|
1.0
|
OD1
|
D:ASP488
|
4.5
|
34.0
|
1.0
|
CB
|
D:ASP486
|
4.6
|
28.5
|
1.0
|
HB2
|
D:ASP486
|
4.8
|
34.3
|
1.0
|
NE2
|
D:GLN490
|
4.8
|
43.0
|
1.0
|
HB3
|
D:ASP486
|
4.9
|
34.3
|
1.0
|
|
Calcium binding site 6 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 6 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca705
b:48.0
occ:1.00
|
OE2
|
D:GLU456
|
2.5
|
25.1
|
1.0
|
O
|
D:HOH1029
|
2.6
|
27.1
|
1.0
|
OD2
|
D:ASP455
|
2.7
|
26.9
|
1.0
|
HG2
|
D:GLU456
|
3.0
|
23.9
|
1.0
|
O
|
D:HOH832
|
3.0
|
24.4
|
1.0
|
HH22
|
D:ARG500
|
3.0
|
34.6
|
1.0
|
HZ2
|
D:LYS459
|
3.0
|
30.4
|
1.0
|
HB3
|
D:ASP455
|
3.3
|
30.3
|
1.0
|
CD
|
D:GLU456
|
3.5
|
23.4
|
1.0
|
CG
|
D:GLU456
|
3.7
|
19.8
|
1.0
|
NH2
|
D:ARG500
|
3.7
|
28.8
|
1.0
|
CG
|
D:ASP455
|
3.7
|
26.3
|
1.0
|
HH21
|
D:ARG533
|
3.8
|
28.3
|
1.0
|
HD2
|
D:LYS459
|
3.8
|
32.6
|
1.0
|
HH12
|
D:ARG500
|
3.8
|
41.2
|
1.0
|
NZ
|
D:LYS459
|
3.9
|
25.3
|
1.0
|
CB
|
D:ASP455
|
4.0
|
25.2
|
1.0
|
HH21
|
D:ARG500
|
4.1
|
34.6
|
1.0
|
HZ1
|
D:LYS459
|
4.2
|
30.4
|
1.0
|
HG3
|
D:GLU456
|
4.2
|
23.9
|
1.0
|
HZ3
|
D:LYS459
|
4.3
|
30.4
|
1.0
|
HA
|
D:GLU456
|
4.3
|
24.6
|
1.0
|
H
|
D:GLU456
|
4.3
|
25.1
|
1.0
|
N
|
D:GLU456
|
4.4
|
20.9
|
1.0
|
NH1
|
D:ARG500
|
4.4
|
34.3
|
1.0
|
CZ
|
D:ARG500
|
4.5
|
31.3
|
1.0
|
O
|
D:HOH953
|
4.5
|
30.9
|
1.0
|
OD1
|
D:ASP453
|
4.5
|
20.8
|
1.0
|
NH2
|
D:ARG533
|
4.5
|
23.6
|
1.0
|
CD
|
D:LYS459
|
4.6
|
27.2
|
1.0
|
HB2
|
D:ASP455
|
4.6
|
30.3
|
1.0
|
OE1
|
D:GLU456
|
4.6
|
23.9
|
1.0
|
C
|
D:ASP455
|
4.6
|
22.3
|
1.0
|
HH22
|
D:ARG533
|
4.7
|
28.3
|
1.0
|
CA
|
D:GLU456
|
4.7
|
20.4
|
1.0
|
CE
|
D:LYS459
|
4.7
|
27.4
|
1.0
|
OD2
|
D:ASP453
|
4.7
|
22.7
|
1.0
|
HD3
|
D:LYS459
|
4.7
|
32.6
|
1.0
|
CB
|
D:GLU456
|
4.8
|
21.6
|
1.0
|
O
|
D:HOH1120
|
4.8
|
33.3
|
1.0
|
HE3
|
D:LYS459
|
4.9
|
32.9
|
1.0
|
OD1
|
D:ASP455
|
4.9
|
31.5
|
1.0
|
CA
|
D:ASP455
|
5.0
|
20.9
|
1.0
|
|
Calcium binding site 7 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 7 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca706
b:72.2
occ:1.00
|
O
|
D:HOH951
|
3.0
|
26.7
|
1.0
|
O
|
D:HOH1043
|
3.6
|
24.7
|
1.0
|
O
|
D:HOH1126
|
3.8
|
25.6
|
1.0
|
O
|
D:HOH981
|
3.9
|
32.0
|
1.0
|
O
|
D:HOH824
|
3.9
|
24.8
|
1.0
|
O
|
D:HOH1014
|
4.2
|
21.6
|
1.0
|
O
|
D:HOH1046
|
4.3
|
33.1
|
1.0
|
HG2
|
D:GLU517
|
4.3
|
29.0
|
1.0
|
O
|
D:HOH855
|
4.4
|
29.2
|
1.0
|
O
|
D:VAL513
|
4.5
|
21.4
|
1.0
|
O
|
D:HOH1150
|
4.6
|
33.4
|
1.0
|
O
|
D:HOH988
|
4.6
|
26.6
|
1.0
|
O
|
D:HOH1121
|
4.7
|
34.6
|
1.0
|
HD13
|
D:LEU601
|
4.8
|
35.4
|
1.0
|
HB
|
D:VAL513
|
4.9
|
23.9
|
1.0
|
HB3
|
D:ALA516
|
4.9
|
26.3
|
1.0
|
|
Calcium binding site 8 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 8 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca703
b:30.4
occ:1.00
|
OD2
|
E:ASP486
|
2.3
|
30.2
|
1.0
|
OD2
|
E:ASP488
|
2.4
|
21.2
|
1.0
|
O
|
E:HOH1049
|
2.4
|
33.9
|
1.0
|
O
|
E:HOH1047
|
2.6
|
31.0
|
1.0
|
O
|
E:HOH1063
|
2.6
|
25.8
|
1.0
|
OD1
|
E:ASP486
|
2.8
|
25.6
|
1.0
|
CG
|
E:ASP486
|
2.9
|
26.5
|
1.0
|
HB2
|
E:ASP488
|
3.2
|
29.9
|
1.0
|
CG
|
E:ASP488
|
3.4
|
25.3
|
1.0
|
CB
|
E:ASP488
|
3.8
|
24.8
|
1.0
|
H
|
E:ASP488
|
4.1
|
22.2
|
1.0
|
HB3
|
E:ASP488
|
4.3
|
29.9
|
1.0
|
HD2
|
E:PRO487
|
4.4
|
32.4
|
1.0
|
CB
|
E:ASP486
|
4.4
|
28.2
|
1.0
|
OD1
|
E:ASP488
|
4.5
|
26.2
|
1.0
|
O
|
E:HOH912
|
4.6
|
24.6
|
1.0
|
HB2
|
E:ASP486
|
4.7
|
33.9
|
1.0
|
HB3
|
E:ASP486
|
4.8
|
33.9
|
1.0
|
N
|
E:ASP488
|
4.8
|
18.5
|
1.0
|
CA
|
E:ASP488
|
5.0
|
22.7
|
1.0
|
|
Calcium binding site 9 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 9 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca703
b:36.0
occ:1.00
|
OD2
|
F:ASP488
|
2.4
|
23.9
|
1.0
|
OD2
|
F:ASP486
|
2.4
|
27.2
|
1.0
|
O
|
F:HOH1087
|
2.6
|
29.5
|
1.0
|
OD1
|
F:ASP486
|
2.8
|
25.3
|
1.0
|
CG
|
F:ASP486
|
2.9
|
27.1
|
1.0
|
HB2
|
F:ASP488
|
3.1
|
27.9
|
1.0
|
CG
|
F:ASP488
|
3.4
|
25.0
|
1.0
|
CB
|
F:ASP488
|
3.8
|
23.2
|
1.0
|
H
|
F:ASP488
|
4.1
|
25.8
|
1.0
|
HB3
|
F:ASP488
|
4.3
|
27.9
|
1.0
|
O
|
F:HOH810
|
4.3
|
25.2
|
1.0
|
CB
|
F:ASP486
|
4.4
|
24.9
|
1.0
|
OD1
|
F:ASP488
|
4.5
|
25.2
|
1.0
|
HD2
|
F:PRO487
|
4.6
|
31.9
|
1.0
|
HB2
|
F:ASP486
|
4.7
|
30.0
|
1.0
|
HB3
|
F:ASP486
|
4.8
|
30.0
|
1.0
|
N
|
F:ASP488
|
4.8
|
21.4
|
1.0
|
CA
|
F:ASP488
|
4.9
|
25.0
|
1.0
|
|
Calcium binding site 10 out
of 12 in 8a45
Go back to
Calcium Binding Sites List in 8a45
Calcium binding site 10 out
of 12 in the Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca704
b:41.2
occ:1.00
|
O
|
F:ALA302
|
2.2
|
32.7
|
1.0
|
O
|
F:HOH1075
|
2.5
|
39.9
|
1.0
|
O
|
F:GLY299
|
2.5
|
30.1
|
1.0
|
O
|
F:HOH1036
|
2.7
|
31.8
|
1.0
|
O
|
F:HOH967
|
2.7
|
35.3
|
1.0
|
O
|
F:HOH1097
|
2.7
|
47.8
|
1.0
|
O
|
F:HOH1098
|
2.8
|
48.9
|
1.0
|
C
|
F:ALA302
|
3.4
|
30.3
|
1.0
|
H
|
F:ALA302
|
3.5
|
31.4
|
1.0
|
HA
|
F:ILE303
|
3.5
|
36.9
|
1.0
|
C
|
F:GLY299
|
3.6
|
32.2
|
1.0
|
HA2
|
F:GLY299
|
3.9
|
38.3
|
1.0
|
HG22
|
F:ILE303
|
3.9
|
37.9
|
1.0
|
HA
|
F:TYR300
|
4.1
|
36.3
|
1.0
|
N
|
F:ALA302
|
4.2
|
26.1
|
1.0
|
HB3
|
F:ALA302
|
4.3
|
36.4
|
1.0
|
N
|
F:ILE303
|
4.3
|
31.2
|
1.0
|
CA
|
F:ILE303
|
4.3
|
30.7
|
1.0
|
CA
|
F:GLY299
|
4.3
|
31.9
|
1.0
|
CA
|
F:ALA302
|
4.3
|
29.9
|
1.0
|
O
|
F:HOH1102
|
4.4
|
39.8
|
1.0
|
O
|
F:HOH941
|
4.5
|
32.6
|
1.0
|
N
|
F:TYR300
|
4.6
|
30.3
|
1.0
|
CG2
|
F:ILE303
|
4.7
|
31.5
|
1.0
|
HG23
|
F:ILE303
|
4.7
|
37.9
|
1.0
|
HA3
|
F:GLY299
|
4.8
|
38.3
|
1.0
|
CA
|
F:TYR300
|
4.8
|
30.2
|
1.0
|
H
|
F:HIS301
|
4.8
|
35.8
|
1.0
|
CB
|
F:ALA302
|
4.8
|
30.2
|
1.0
|
O
|
F:ILE298
|
5.0
|
30.5
|
1.0
|
|
Reference:
R.Hamid,
A.Hirsch.
Structural Analysis of 1-Deoxy-D-Xylulose 5-Phosphate Synthase From Pseudomonas Aeruginosa with 2-Acetyl Thiamine Diphosphate To Be Published.
Page generated: Fri Jul 19 06:46:20 2024
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