Calcium in PDB 8ae1: Structure of Trimeric Slpa Outer Membrane Protein

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Calcium atom in the Structure of Trimeric Slpa Outer Membrane Protein (pdb code 8ae1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 18 binding sites of Calcium where determined in the Structure of Trimeric Slpa Outer Membrane Protein, PDB code: 8ae1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1201 b:50.1 occ:1.00 OD2 A:ASP276 2.4 47.8 1.0 O A:ARG305 2.4 51.7 1.0 OD1 A:ASP310 2.4 49.2 1.0 OD2 A:ASP310 2.4 49.2 1.0 OD1 A:ASP274 2.5 46.7 1.0 O A:PHE308 2.6 49.6 1.0 CG A:ASP310 2.8 49.2 1.0 CG A:ASP276 3.6 47.8 1.0 C A:PHE308 3.6 49.6 1.0 C A:ARG305 3.7 51.7 1.0 CG A:ASP274 3.7 46.7 1.0 N A:PHE308 4.2 49.6 1.0 CB A:ASP276 4.2 47.8 1.0 CB A:ASP310 4.3 49.2 1.0 O A:GLY309 4.3 49.2 1.0 CA A:PHE308 4.3 49.6 1.0 CA A:GLY295 4.3 53.4 1.0 CB A:PHE308 4.4 49.6 1.0 C A:GLY309 4.4 49.2 1.0 OD2 A:ASP274 4.5 46.7 1.0 CA A:ARG306 4.5 48.8 1.0 N A:ARG306 4.5 48.8 1.0 N A:GLY295 4.5 53.4 1.0 CB A:ASP274 4.5 46.7 1.0 CA A:ARG305 4.6 51.7 1.0 O A:SER294 4.6 52.6 1.0 C A:SER294 4.6 52.6 1.0 OD1 A:ASP276 4.6 47.8 1.0 N A:GLY309 4.6 49.2 1.0 N A:SER294 4.8 52.6 1.0 C A:ARG306 4.8 48.8 1.0 OG1 A:THR293 4.8 50.9 1.0 N A:ASP310 4.8 49.2 1.0 N A:ASP276 4.8 47.8 1.0 CA A:GLY309 4.8 49.2 1.0 CA A:ASP274 4.9 46.7 1.0 N A:ASP307 4.9 50.0 1.0 CB A:ARG305 4.9 51.7 1.0 CA A:ASP310 5.0 49.2 1.0

Calcium binding site 2 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1202 b:79.1 occ:1.00 O A:LYS444 2.4 77.3 1.0 OD1 A:ASN440 2.4 76.0 1.0 OE2 A:GLU449 2.4 78.1 1.0 OD1 A:ASP438 2.4 73.9 1.0 OD1 A:ASP446 2.5 79.9 1.0 OD1 A:ASN442 2.5 76.9 1.0 OE1 A:GLU449 2.7 78.1 1.0 CD A:GLU449 2.9 78.1 1.0 CG A:ASN440 3.2 76.0 1.0 ND2 A:ASN440 3.3 76.0 1.0 CG A:ASN442 3.3 76.9 1.0 ND2 A:ASN442 3.5 76.9 1.0 CG A:ASP446 3.6 79.9 1.0 C A:LYS444 3.6 77.3 1.0 CG A:ASP438 3.7 73.9 1.0 N A:ASP446 3.8 79.9 1.0 CB A:ASP446 4.1 79.9 1.0 N A:LYS444 4.3 77.3 1.0 CG A:GLU449 4.4 78.1 1.0 CA A:ASP438 4.5 73.9 1.0 N A:LYS445 4.5 77.1 1.0 CA A:LYS445 4.5 77.1 1.0 N A:ASN440 4.5 76.0 1.0 CA A:LYS444 4.5 77.3 1.0 CB A:ASP438 4.5 73.9 1.0 OD2 A:ASP438 4.5 73.9 1.0 CB A:ASN440 4.6 76.0 1.0 CA A:ASP446 4.6 79.9 1.0 N A:THR439 4.6 74.5 1.0 OD2 A:ASP446 4.6 79.9 1.0 C A:LYS445 4.7 77.1 1.0 CB A:ASN442 4.7 76.9 1.0 N A:ASN442 4.7 76.9 1.0 CE2 A:TYR436 4.8 71.9 1.0 C A:ASP438 4.9 73.9 1.0 N A:GLY443 5.0 75.9 1.0

Calcium binding site 3 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1203 b:44.4 occ:1.00 O A:GLY559 2.4 47.0 1.0 OE2 C:GLU381 2.4 43.6 1.0 O A:GLY551 2.5 43.7 1.0 O A:ARG549 2.5 42.4 1.0 OD2 A:ASP553 3.3 47.2 1.0 CD C:GLU381 3.3 43.6 1.0 C A:GLY551 3.6 43.7 1.0 C A:ARG549 3.6 42.4 1.0 C A:GLY559 3.6 47.0 1.0 N A:GLY551 3.9 43.7 1.0 CG C:GLU381 3.9 43.6 1.0 N A:ARG549 4.0 42.4 1.0 N A:GLY561 4.0 44.3 1.0 CA A:GLY551 4.1 43.7 1.0 OE1 C:GLU381 4.1 43.6 1.0 O A:VAL562 4.2 42.8 1.0 C A:SER548 4.3 41.2 1.0 CA A:ARG549 4.3 42.4 1.0 CG A:ASP553 4.3 47.2 1.0 OG A:SER548 4.3 41.2 1.0 CB A:SER548 4.3 41.2 1.0 N A:VAL562 4.4 42.8 1.0 C A:SER550 4.4 43.9 1.0 CA A:TYR560 4.5 47.6 1.0 N A:TYR560 4.5 47.6 1.0 CA A:GLY559 4.6 47.0 1.0 N A:SER550 4.6 43.9 1.0 O A:SER548 4.6 41.2 1.0 C A:TYR560 4.7 47.6 1.0 N A:LEU552 4.7 45.2 1.0 CB A:ARG549 4.7 42.4 1.0 CA A:SER548 4.8 41.2 1.0 CA A:GLY561 4.8 44.3 1.0 O C:GLY382 4.8 42.1 1.0 CB A:ASP553 4.9 47.2 1.0 CA A:SER550 4.9 43.9 1.0 N A:ASP553 5.0 47.2 1.0

Calcium binding site 4 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1204 b:47.6 occ:1.00 OD1 A:ASP553 2.5 47.2 1.0 O A:SER550 2.5 43.9 1.0 O A:LEU552 2.7 45.2 1.0 CG A:ASP553 3.6 47.2 1.0 C A:SER550 3.6 43.9 1.0 CB A:SER550 3.6 43.9 1.0 C A:LEU552 3.8 45.2 1.0 CA A:SER550 4.1 43.9 1.0 OD2 A:ASP553 4.2 47.2 1.0 N A:LEU552 4.4 45.2 1.0 CA A:ASP553 4.5 47.2 1.0 N A:ASP553 4.6 47.2 1.0 CB A:ASP553 4.6 47.2 1.0 C A:GLY551 4.7 43.7 1.0 CA A:LEU552 4.7 45.2 1.0 N A:GLY551 4.7 43.7 1.0 OG A:SER550 4.8 43.9 1.0 OE1 A:GLU557 4.9 52.2 1.0

Calcium binding site 5 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1205 b:47.7 occ:1.00 O A:GLY716 2.4 44.9 1.0 OD1 A:ASN515 2.4 42.6 1.0 OD1 A:ASP513 2.7 40.8 1.0 OD2 A:ASP513 2.7 40.8 1.0 CG A:ASP513 3.1 40.8 1.0 CG A:ASN515 3.4 42.6 1.0 C A:GLY716 3.7 44.9 1.0 ND2 A:ASN515 3.7 42.6 1.0 CG2 A:THR718 4.3 42.1 1.0 CA A:GLY716 4.4 44.9 1.0 CB A:ASP513 4.6 40.8 1.0 N A:VAL717 4.6 43.0 1.0 CD1 A:TYR506 4.6 39.6 1.0 N A:ASN515 4.7 42.6 1.0 CA A:VAL717 4.7 43.0 1.0 CB A:ASN515 4.8 42.6 1.0 N A:THR718 4.8 42.1 1.0 CE1 A:TYR506 4.9 39.6 1.0 N A:TYR516 5.0 47.3 1.0

Calcium binding site 6 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1206 b:79.5 occ:1.00 OD1 A:ASP735 2.4 78.4 1.0 OD1 A:ASP739 2.5 71.5 1.0 OD2 A:ASP735 2.5 78.4 1.0 OD1 A:ASN733 2.6 78.5 1.0 O A:THR737 2.6 76.6 1.0 CG A:ASP735 2.8 78.4 1.0 ND2 A:ASN733 3.1 78.5 1.0 OD1 A:ASP731 3.2 75.5 1.0 CG A:ASN733 3.2 78.5 1.0 OG1 A:THR737 3.3 76.6 1.0 CG A:ASP739 3.7 71.5 1.0 C A:THR737 3.7 76.6 1.0 N A:ASP739 4.1 71.5 1.0 CA A:ASP739 4.2 71.5 1.0 C A:SER738 4.3 71.9 1.0 CB A:ASP735 4.3 78.4 1.0 CG A:ASP731 4.3 75.5 1.0 CB A:THR737 4.4 76.6 1.0 OD2 A:ASP739 4.5 71.5 1.0 CA A:THR737 4.5 76.6 1.0 CB A:ASP739 4.5 71.5 1.0 O A:SER738 4.5 71.9 1.0 N A:THR737 4.6 76.6 1.0 N A:SER738 4.7 71.9 1.0 CB A:ASN733 4.7 78.5 1.0 N A:ASP735 4.7 78.4 1.0 CA A:SER738 4.9 71.9 1.0 OD2 A:ASP731 5.0 75.5 1.0

Calcium binding site 7 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1201 b:49.6 occ:1.00 OD2 B:ASP276 2.4 47.2 1.0 OD2 B:ASP310 2.4 48.5 1.0 O B:ARG305 2.4 50.8 1.0 OD1 B:ASP274 2.4 45.7 1.0 OD1 B:ASP310 2.4 48.5 1.0 O B:PHE308 2.6 48.5 1.0 CG B:ASP310 2.8 48.5 1.0 C B:PHE308 3.6 48.5 1.0 CG B:ASP276 3.6 47.2 1.0 C B:ARG305 3.7 50.8 1.0 CG B:ASP274 3.7 45.7 1.0 N B:PHE308 4.1 48.5 1.0 CA B:PHE308 4.2 48.5 1.0 CB B:ASP276 4.2 47.2 1.0 O B:GLY309 4.2 47.9 1.0 CB B:ASP310 4.3 48.5 1.0 CB B:PHE308 4.3 48.5 1.0 O B:SER294 4.4 50.9 1.0 CA B:GLY295 4.4 52.4 1.0 C B:GLY309 4.4 47.9 1.0 CB B:ASP274 4.5 45.7 1.0 C B:SER294 4.5 50.9 1.0 OD2 B:ASP274 4.5 45.7 1.0 CA B:ARG305 4.5 50.8 1.0 N B:ARG306 4.6 48.0 1.0 CA B:ARG306 4.6 48.0 1.0 N B:GLY309 4.6 47.9 1.0 N B:GLY295 4.6 52.4 1.0 OD1 B:ASP276 4.6 47.2 1.0 OG1 B:THR293 4.7 50.1 1.0 N B:SER294 4.7 50.9 1.0 CA B:GLY309 4.8 47.9 1.0 C B:ARG306 4.8 48.0 1.0 N B:ASP310 4.8 48.5 1.0 N B:ASP276 4.9 47.2 1.0 CA B:ASP274 4.9 45.7 1.0 CB B:ARG305 4.9 50.8 1.0 OG B:SER294 4.9 50.9 1.0 N B:ASP307 4.9 48.9 1.0 CA B:ASP310 5.0 48.5 1.0

Calcium binding site 8 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1202 b:79.8 occ:1.00 O B:LYS444 2.4 78.2 1.0 OD1 B:ASN440 2.4 77.1 1.0 OE2 B:GLU449 2.4 78.3 1.0 OD1 B:ASN442 2.5 77.5 1.0 OD1 B:ASP438 2.5 74.7 1.0 OD2 B:ASP446 2.8 81.5 1.0 OE1 B:GLU449 3.0 78.3 1.0 CD B:GLU449 3.1 78.3 1.0 CG B:ASN442 3.2 77.5 1.0 CG B:ASN440 3.2 77.1 1.0 ND2 B:ASN442 3.2 77.5 1.0 ND2 B:ASN440 3.2 77.1 1.0 CG B:ASP446 3.3 81.5 1.0 C B:LYS444 3.6 78.2 1.0 N B:ASP446 3.7 81.5 1.0 CB B:ASP446 3.8 81.5 1.0 CG B:ASP438 3.8 74.7 1.0 OD1 B:ASP446 3.9 81.5 1.0 N B:LYS444 4.3 78.2 1.0 CA B:ASP446 4.4 81.5 1.0 N B:LYS445 4.5 78.7 1.0 CA B:LYS444 4.5 78.2 1.0 CG B:GLU449 4.5 78.3 1.0 CA B:LYS445 4.6 78.7 1.0 C B:LYS445 4.6 78.7 1.0 CB B:ASN442 4.6 77.5 1.0 OD2 B:ASP438 4.6 74.7 1.0 CB B:ASN440 4.6 77.1 1.0 N B:ASN440 4.6 77.1 1.0 CB B:ASP438 4.7 74.7 1.0 CA B:ASP438 4.8 74.7 1.0 N B:ASN442 4.8 77.5 1.0 N B:THR439 4.8 75.4 1.0 CE2 B:TYR436 5.0 73.4 1.0

Calcium binding site 9 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1203 b:45.1 occ:1.00 OE2 A:GLU381 2.4 44.9 1.0 O B:GLY559 2.4 48.6 1.0 O B:ARG549 2.5 44.5 1.0 O B:GLY551 2.5 46.0 1.0 CD A:GLU381 3.2 44.9 1.0 C B:ARG549 3.6 44.5 1.0 C B:GLY551 3.6 46.0 1.0 C B:GLY559 3.7 48.6 1.0 N B:GLY551 3.8 46.0 1.0 CG A:GLU381 3.9 44.9 1.0 N B:ARG549 3.9 44.5 1.0 N B:GLY561 4.0 45.1 1.0 OE1 A:GLU381 4.0 44.9 1.0 CA B:GLY551 4.1 46.0 1.0 CB B:SER548 4.2 42.4 1.0 CA B:ARG549 4.2 44.5 1.0 OG B:SER548 4.2 42.4 1.0 C B:SER548 4.2 42.4 1.0 O B:VAL562 4.3 43.2 1.0 N B:VAL562 4.4 43.2 1.0 C B:SER550 4.5 46.4 1.0 CA B:TYR560 4.5 48.4 1.0 N B:TYR560 4.5 48.4 1.0 CA B:GLY559 4.6 48.6 1.0 N B:SER550 4.6 46.4 1.0 CB B:ARG549 4.6 44.5 1.0 O B:SER548 4.6 42.4 1.0 C B:TYR560 4.7 48.4 1.0 CA B:SER548 4.7 42.4 1.0 O A:GLY382 4.7 43.5 1.0 CB B:ASP553 4.8 50.4 1.0 CA B:GLY561 4.8 45.1 1.0 N B:LEU552 4.8 47.5 1.0 OD2 B:ASP553 4.8 50.4 1.0 CG B:ASP553 4.9 50.4 1.0 CA B:SER550 5.0 46.4 1.0

Calcium binding site 10 out of 18 in the Structure of Trimeric Slpa Outer Membrane Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Trimeric Slpa Outer Membrane Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1204 b:52.2 occ:1.00 OD1 B:ASP553 2.5 50.4 1.0 O B:SER550 2.7 46.4 1.0 O B:LEU552 2.9 47.5 1.0 CB B:SER550 3.4 46.4 1.0 CG B:ASP553 3.7 50.4 1.0 C B:SER550 3.7 46.4 1.0 C B:LEU552 4.0 47.5 1.0 CA B:SER550 4.0 46.4 1.0 OD2 B:ASP553 4.3 50.4 1.0 OG B:SER550 4.5 46.4 1.0 CA B:ASP553 4.6 50.4 1.0 N B:LEU552 4.7 47.5 1.0 N B:ASP553 4.7 50.4 1.0 CB B:ASP553 4.7 50.4 1.0 N B:GLY551 4.8 46.0 1.0 C B:GLY551 4.9 46.0 1.0 CA B:LEU552 4.9 47.5 1.0

A.Von Kugelgen, S.Van Dorst, V.Alva, T.A.M.Bharat. A Multidomain Connector Links the Outer Membrane and Cell Wall in Phylogenetically Deep-Branching Bacteria. Proc.Natl.Acad.Sci.Usa V. 119 56119 2022.
ISSN: ESSN 1091-6490
PubMed: 35943982
DOI: 10.1073/PNAS.2203156119