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Calcium in PDB 8aol: Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499)

Protein crystallography data

The structure of Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499), PDB code: 8aol was solved by T.Sagmeister, E.Damisch, M.Eder, A.Dordic, D.Vejzovic, T.Pavkov-Keller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.43 / 2.40
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 133.174, 133.174, 70.572, 90, 90, 120
R / Rfree (%) 17.8 / 20.5

Other elements in 8aol:

The structure of Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499) also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499) (pdb code 8aol). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499), PDB code: 8aol:

Calcium binding site 1 out of 1 in 8aol

Go back to Calcium Binding Sites List in 8aol
Calcium binding site 1 out of 1 in the Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca606

b:45.8
occ:1.00
O A:ASN441 2.3 41.5 1.0
O3 A:PO4604 2.3 44.8 1.0
O A:HOH732 2.3 42.1 1.0
O A:HOH772 2.4 38.6 1.0
O3 A:PO4605 2.4 51.8 1.0
O A:HOH793 2.4 44.5 1.0
C A:ASN441 3.4 41.2 1.0
P A:PO4604 3.5 40.0 1.0
P A:PO4605 3.7 46.8 1.0
O2 A:PO4604 3.7 41.1 1.0
HA A:ALA442 3.8 39.5 1.0
HB2 A:ASN441 3.9 46.0 1.0
O4 A:PO4605 3.9 39.5 1.0
O A:HOH735 4.1 54.4 1.0
O A:HOH734 4.1 60.6 1.0
HD21 A:ASN497 4.2 42.0 1.0
HB3 A:HIS440 4.2 38.2 1.0
CA A:ASN441 4.3 43.1 1.0
N A:ALA442 4.3 43.6 1.0
O1 A:PO4604 4.3 43.0 1.0
O A:HOH705 4.4 52.6 1.0
OD1 A:ASN497 4.4 43.0 1.0
CB A:ASN441 4.4 48.4 1.0
N A:ASN441 4.5 40.1 1.0
CA A:ALA442 4.5 38.7 1.0
O4 A:PO4604 4.5 43.9 1.0
H A:ASN441 4.5 41.7 1.0
O A:HOH827 4.5 47.0 1.0
HB3 A:ASN441 4.5 46.0 1.0
O2 A:PO4605 4.6 57.8 1.0
ND2 A:ASN497 4.6 42.6 1.0
O1 A:PO4605 4.6 39.8 1.0
HB2 A:HIS440 4.6 38.2 1.0
H A:TYR443 4.7 36.1 1.0
CG A:ASN497 4.8 40.6 1.0
CB A:HIS440 4.9 36.8 1.0

Reference:

T.Sagmeister, N.Gubensaek, C.Buhlheller, C.Grininger, M.Eder, D.Vejzovic, A.Dordic, T.Pavkov-Keller. Crystal Structure of S-Layer Protein Slpx From Lactobacillus Acidophilus, Domain III (Aa 363-499) To Be Published.
Page generated: Fri Jul 19 06:59:49 2024

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