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Calcium in PDB 8bd9: Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10

Enzymatic activity of Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10

All present enzymatic activity of Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10, PDB code: 8bd9 was solved by G.Tassone, C.Pozzi, T.Palomba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.68 / 3.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.953, 79.953, 134.945, 90, 90, 120
R / Rfree (%) 23.2 / 34.9

Other elements in 8bd9:

The structure of Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10 (pdb code 8bd9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10, PDB code: 8bd9:

Calcium binding site 1 out of 1 in 8bd9

Go back to Calcium Binding Sites List in 8bd9
Calcium binding site 1 out of 1 in the Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of TRIM33 Alpha Phd-Bromo Domain in Complex with 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1104

b:75.9
occ:1.00
OD2 A:ASP898 2.6 75.4 1.0
OD1 A:ASP898 3.1 91.2 1.0
CG A:ASP898 3.2 87.3 1.0
CB A:ASP898 4.7 86.4 1.0

Reference:

T.Palomba, G.Tassone, C.Vacca, M.Bartalucci, A.Valeri, C.Pozzi, S.Cross, L.Siragusa, J.Desantis. Exploiting Eliot For Scaffold-Repurposing Opportunities: TRIM33 A Possible Novel E3 Ligase to Expand the Toolbox For Protac Design. Int J Mol Sci V. 23 2022.
ISSN: ESSN 1422-0067
PubMed: 36430693
DOI: 10.3390/IJMS232214218
Page generated: Thu Jul 10 03:28:43 2025

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