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Calcium in PDB 8c8e: Crystal Structure of PHI3T_93 L23D Mutant

Protein crystallography data

The structure of Crystal Structure of PHI3T_93 L23D Mutant, PDB code: 8c8e was solved by S.Zamora-Caballero, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.26 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.89, 71.89, 68.341, 90, 90, 120
R / Rfree (%) 21 / 23.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of PHI3T_93 L23D Mutant (pdb code 8c8e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of PHI3T_93 L23D Mutant, PDB code: 8c8e:

Calcium binding site 1 out of 1 in 8c8e

Go back to Calcium Binding Sites List in 8c8e
Calcium binding site 1 out of 1 in the Crystal Structure of PHI3T_93 L23D Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of PHI3T_93 L23D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:71.0
occ:0.50
OD1 A:ASN37 2.4 49.7 1.0
CG A:ASN37 3.3 52.0 1.0
OE1 A:GLN40 3.5 50.3 1.0
ND2 A:ASN37 3.5 53.8 1.0
CD A:GLN40 4.5 49.3 1.0
CB A:ASN37 4.6 45.6 1.0
CA A:ASN37 4.9 45.2 1.0
NE2 A:GLN40 5.0 50.7 1.0

Reference:

S.Zamora-Caballero, A.Marina. Antagonistic Interactions Between Phage and Host Factors Control Arbitrium Lysis-Lysogeny Decision Nat Microbiol 2023.
ISSN: ESSN 2058-5276
Page generated: Fri Jul 19 07:34:58 2024

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