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Calcium in PDB 8chs: Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model).

Enzymatic activity of Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model).

All present enzymatic activity of Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model).:
2.8.2.8;

Calcium Binding Sites:

The binding sites of Calcium atom in the Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model). (pdb code 8chs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model)., PDB code: 8chs:

Calcium binding site 1 out of 1 in 8chs

Go back to Calcium Binding Sites List in 8chs
Calcium binding site 1 out of 1 in the Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 in Complex with Calcium, 3'-Phosphoadenosine-5'-Phosphosulfate and Nanobody NAB13 (Composite Map and Model). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca902

b:43.1
occ:1.00
O A:HOH1001 2.1 46.3 1.0
OD2 A:ASP320 2.2 14.5 1.0
OD1 A:ASP320 2.4 32.7 1.0
CG A:ASP320 2.6 23.6 1.0
NE2 A:HIS393 2.9 21.4 1.0
CD2 A:HIS529 3.3 34.5 1.0
NE2 A:HIS529 3.3 21.5 1.0
CE1 A:HIS393 3.6 24.1 1.0
OD2 A:ASP319 3.6 16.6 1.0
CD2 A:HIS393 4.0 22.3 1.0
CB A:ASP320 4.0 14.5 1.0
CB A:PRO431 4.2 55.8 1.0
CA A:PRO431 4.2 48.2 1.0
CG A:ASP319 4.4 25.1 1.0
CE1 A:HIS529 4.5 17.4 1.0
CG A:HIS529 4.5 29.5 1.0
NE2 A:HIS389 4.7 22.0 1.0
CB A:ASP319 4.7 25.9 1.0
ND1 A:HIS393 4.8 21.2 1.0
N A:ASP320 4.9 24.6 1.0
CA A:ASP320 4.9 11.7 1.0
CE1 A:HIS389 5.0 24.1 1.0
N A:HIS432 5.0 70.0 1.0
CG A:HIS393 5.0 15.1 1.0

Reference:

C.J.Mycroft-West, S.Abdelkarim, H.M.E.Duyvesteyn, M.A.Skidmore, R.J.Owens, L.Wu. Structural and Mechanistic Characterization of Bifunctional Heparan Sulfate N-Deacetylase-N-Sulfotransferase 1 To Be Published.
Page generated: Thu Jul 10 03:40:32 2025

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