Calcium in PDB 8ck2: MUC2 CYSD1 G1352S

The structure of MUC2 CYSD1 G1352S, PDB code: 8ck2 was solved by L.Khmelnitsky, D.Fass, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.66 / 1.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	55.008, 58.962, 27.659, 90, 90, 90
R / Rfree (%)	18.6 / 21.5

The structure of MUC2 CYSD1 G1352S also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Calcium atom in the MUC2 CYSD1 G1352S (pdb code 8ck2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the MUC2 CYSD1 G1352S, PDB code: 8ck2:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the MUC2 CYSD1 G1352S


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MUC2 CYSD1 G1352S within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1403 b:17.7 occ:1.00 OE2 A:GLU1324 2.3 17.8 1.0 OD1 A:ASN1310 2.3 18.9 1.0 O A:TYR1382 2.4 16.1 1.0 OD1 A:ASP1381 2.4 18.6 1.0 O A:ASP1312 2.4 18.9 1.0 OD1 A:ASP1322 2.5 19.9 1.0 OD2 A:ASP1322 2.5 19.7 1.0 CG A:ASP1322 2.9 18.5 1.0 C A:ASP1312 3.4 17.5 1.0 CD A:GLU1324 3.4 17.8 1.0 CG A:ASN1310 3.5 19.3 1.0 CG A:ASP1381 3.5 20.9 1.0 C A:TYR1382 3.5 15.5 1.0 N A:TYR1382 3.6 14.3 1.0 CG A:GLU1324 3.9 16.6 1.0 OD2 A:ASP1381 4.1 23.6 1.0 N A:ASP1312 4.1 17.6 1.0 N A:HIS1313 4.2 16.4 1.0 CA A:TYR1382 4.2 15.2 1.0 CA A:ASP1312 4.2 15.2 1.0 CA A:HIS1313 4.2 19.2 1.0 ND1 A:HIS1313 4.3 21.6 1.0 ND2 A:ASN1310 4.3 18.7 1.0 CB A:ASP1322 4.4 16.6 1.0 CA A:ASN1310 4.4 17.2 1.0 OE1 A:GLU1324 4.4 17.9 1.0 CB A:ASP1312 4.5 18.9 1.0 CB A:ASN1310 4.5 17.2 1.0 C A:ASP1381 4.5 16.9 1.0 C A:ASN1310 4.6 21.5 1.0 N A:LYS1383 4.7 17.1 1.0 CA A:ASP1381 4.7 17.3 1.0 CB A:ASP1381 4.7 19.9 1.0 N A:GLU1311 4.7 17.7 1.0 CE1 A:HIS1313 4.8 24.9 1.0 CG A:HIS1313 4.8 19.3 1.0 CB A:TYR1382 4.9 13.6 1.0

Calcium binding site 2 out of 2 in the MUC2 CYSD1 G1352S


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of MUC2 CYSD1 G1352S within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1404 b:26.9 occ:1.00 O A:SER1316 2.3 22.3 1.0 O A:HIS1313 2.3 18.2 1.0 O A:GLY1321 2.4 15.6 1.0 O A:HOH1522 2.4 19.1 1.0 OD1 A:ASP1319 2.4 19.4 1.0 OD1 A:ASP1312 2.5 17.5 1.0 CG A:ASP1312 3.3 19.6 1.0 OD2 A:ASP1312 3.4 19.4 1.0 C A:HIS1313 3.4 19.1 1.0 CG A:ASP1319 3.5 21.1 1.0 C A:SER1316 3.5 24.1 1.0 C A:GLY1321 3.6 15.8 1.0 OD2 A:ASP1319 3.8 21.0 1.0 N A:SER1316 3.9 26.5 1.0 N A:HIS1313 4.0 16.4 1.0 N A:GLY1321 4.0 15.1 1.0 C A:PRO1314 4.1 20.8 1.0 CA A:PRO1314 4.2 20.6 1.0 OG A:SER1316 4.2 24.2 0.3 O A:PRO1314 4.2 20.2 1.0 CA A:SER1316 4.3 26.7 0.7 N A:PRO1314 4.3 18.7 1.0 CA A:SER1316 4.3 26.7 0.3 CA A:HIS1313 4.4 19.2 1.0 CA A:GLY1321 4.4 16.8 1.0 O A:HOH1533 4.5 24.3 1.0 N A:GLY1317 4.5 25.1 1.0 N A:ASP1322 4.5 14.9 1.0 N A:SER1315 4.6 24.2 1.0 N A:ASP1320 4.6 18.4 1.0 CA A:ASP1322 4.7 14.8 1.0 CA A:GLY1317 4.7 21.7 1.0 CB A:ASP1312 4.7 18.9 1.0 N A:ASP1319 4.7 18.0 1.0 CB A:SER1316 4.8 26.6 0.7 CB A:ASP1319 4.8 20.0 1.0 C A:GLY1317 4.8 22.6 1.0 CB A:SER1316 4.9 26.6 0.3 C A:SER1315 5.0 26.7 1.0 C A:ASP1312 5.0 17.5 1.0

L.Khmelnitsky, G.Javitt, N.Reznik, N.Yeshaya, N.Elad, Y.Anikster, N.Shalva, O.Barel, B.Pode-Shakked, L.J.Greenberg, M.J.Segel, D.Fass. Pulmonary Fibrosis Mutation Undermines Mucin 5B Supramolecular Assembly To Be Published.