Calcium in PDB 8d3r: Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer

All present enzymatic activity of Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer:
2.7.7.7;

The binding sites of Calcium atom in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer (pdb code 8d3r). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer, PDB code: 8d3r:

Calcium binding site 1 out of 1 in the Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Mitochondrial Dna Polymerase Gamma Ternary Complex with Gt Basepair in Intermediate Conformer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:30.0 occ:1.00 O2A A:DCP1301 2.5 109.4 1.0 OD1 A:ASP1135 3.1 73.5 1.0 O3B A:DCP1301 3.3 111.6 1.0 OD2 A:ASP1135 3.3 82.4 1.0 OD1 A:ASP890 3.4 94.6 1.0 CG A:ASP1135 3.6 78.3 1.0 OD2 A:ASP890 3.6 98.2 1.0 O1B A:DCP1301 3.7 103.3 1.0 PA A:DCP1301 3.8 107.3 1.0 PB A:DCP1301 3.9 120.7 1.0 CG A:ASP890 3.9 93.6 1.0 O3A A:DCP1301 4.1 113.6 1.0 O A:HIS1134 4.2 77.6 1.0 PG A:DCP1301 4.4 109.7 1.0 O1G A:DCP1301 4.4 103.1 1.0 O3G A:DCP1301 4.6 102.2 1.0 OE2 A:GLU1136 4.7 89.4 1.0 O5' A:DCP1301 4.7 102.7 1.0 CD A:GLU1136 4.7 86.5 1.0 C5' A:DCP1301 4.8 103.9 1.0 O A:VAL891 4.8 80.6 1.0 O1A A:DCP1301 4.9 105.5 1.0

J.Park, G.K.Herrmann, P.G.Mitchell, M.B.Sherman, Y.W.Yin. Pol-Gamma Coordinates Dna Synthesis and Proofreading to Ensure Mitochondrial Genome Integrity Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00980-2