Calcium in PDB 8ebw: Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2

All present enzymatic activity of Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2:
3.6.4.12;

The structure of Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2 also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Zinc	(Zn)	5 atoms

The binding sites of Calcium atom in the Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2 (pdb code 8ebw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2, PDB code: 8ebw:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2 within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca400 b:453.0 occ:1.00 OD1 J:ASP116 2.5 450.2 1.0 OD1 J:ASP114 2.8 422.4 1.0 CG J:ASN125 2.8 355.9 1.0 O J:LYS120 2.9 371.2 1.0 OD1 J:ASN125 2.9 355.9 1.0 ND2 J:ASN125 3.0 355.9 1.0 CA J:ASP114 3.1 422.4 1.0 OG1 J:THR118 3.3 437.9 1.0 O J:PHE113 3.4 367.8 1.0 CB J:ASN125 3.5 355.9 1.0 CG J:ASP116 3.5 450.2 1.0 CG J:ASP114 3.6 422.4 1.0 CB J:ASP114 3.8 422.4 1.0 OD2 J:ASP116 3.8 450.2 1.0 C J:ASP114 3.9 422.4 1.0 N J:ASP114 3.9 422.4 1.0 C J:PHE113 4.0 367.8 1.0 N J:ASP115 4.0 435.0 1.0 C J:LYS120 4.0 371.2 1.0 CA J:ILE121 4.3 361.5 1.0 N J:ASP116 4.4 450.2 1.0 N J:ILE121 4.6 361.5 1.0 CB J:THR118 4.7 437.9 1.0 N J:SER122 4.7 343.2 1.0 OD2 J:ASP114 4.7 422.4 1.0 N J:THR118 4.8 437.9 1.0 CB J:ASP116 4.9 450.2 1.0 O J:ASP114 4.9 422.4 1.0 CA J:ASN125 4.9 355.9 1.0 N J:LYS120 5.0 371.2 1.0

Calcium binding site 2 out of 2 in the Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Initial Dna-Lesion (Ap) Binding By Xpc and Tfiih COMPLEX2 within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca401 b:439.3 occ:1.00 OE1 J:GLU161 2.6 393.5 1.0 OD1 J:ASP152 2.6 433.3 1.0 OD2 J:ASP154 2.7 412.8 1.0 OD2 J:ASP152 2.7 433.3 1.0 OE2 J:GLU161 2.8 393.5 1.0 CD J:GLU161 2.8 393.5 1.0 CG J:ASP152 2.9 433.3 1.0 CB J:SER158 3.2 383.3 1.0 CG J:ASP154 3.3 412.8 1.0 OG J:SER158 3.3 383.3 1.0 OD1 J:ASP154 3.3 412.8 1.0 N J:SER158 3.4 383.3 1.0 O J:GLU156 3.8 389.0 1.0 CA J:SER158 3.8 383.3 1.0 OD1 J:ASP150 4.0 408.4 1.0 CG J:GLU161 4.0 393.5 1.0 C J:VAL157 4.1 389.5 1.0 CB J:ASP152 4.2 433.3 1.0 CA J:VAL157 4.3 389.5 1.0 C J:GLU156 4.5 389.0 1.0 N J:ASP152 4.6 433.3 1.0 CB J:ASP154 4.6 412.8 1.0 CB J:GLU161 4.7 393.5 1.0 N J:VAL157 4.7 389.5 1.0 CA J:ASP152 5.0 433.3 1.0 O J:VAL157 5.0 389.5 1.0

J.Kim, C.L.Li, X.Chen, Y.Cui, F.M.Golebiowski, H.Wang, F.Hanaoka, K.Sugasawa, W.Yang. Lesion Recognition By Xpc, Tfiih and Xpa in Dna Excision Repair Nature 2023.
ISSN: ESSN 1476-4687