Calcium in PDB 8ebx: Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap)

All present enzymatic activity of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap):
3.6.4.12;

The structure of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap) also contains other interesting chemical elements:

Zinc	(Zn)	6 atoms
Iron	(Fe)	4 atoms

The binding sites of Calcium atom in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap) (pdb code 8ebx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap), PDB code: 8ebx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca400 b:458.5 occ:1.00 OG1 J:THR118 2.5 462.6 1.0 OD1 J:ASN125 2.5 411.3 1.0 OD1 J:ASP116 2.5 463.8 1.0 OD1 J:ASP114 2.6 455.3 1.0 O J:LYS120 2.9 437.6 1.0 CG J:ASN125 3.0 411.3 1.0 CG J:ASP114 3.0 455.3 1.0 ND2 J:ASN125 3.0 411.3 1.0 CG J:ASP116 3.1 463.8 1.0 OD2 J:ASP116 3.1 463.8 1.0 OD2 J:ASP114 3.3 455.3 1.0 CB J:THR118 3.7 462.6 1.0 CA J:ASP114 3.8 455.3 1.0 CB J:ASP114 3.9 455.3 1.0 CG2 J:THR118 3.9 462.6 1.0 C J:LYS120 4.1 437.6 1.0 CB J:ASN125 4.2 411.3 1.0 N J:THR118 4.2 462.6 1.0 OG J:SER122 4.3 411.1 1.0 C J:ASP114 4.4 455.3 1.0 CB J:ASP116 4.5 463.8 1.0 CA J:THR118 4.5 462.6 1.0 N J:ASP116 4.6 463.8 1.0 N J:SER122 4.7 411.1 1.0 N J:LYS120 4.8 437.6 1.0 N J:ASP115 4.8 459.8 1.0 O J:PHE113 4.8 418.8 1.0 N J:GLU117 4.9 467.1 1.0 CA J:ILE121 4.9 423.4 1.0 CA J:ASP116 4.9 463.8 1.0 N J:ASP114 5.0 455.3 1.0 N J:ILE121 5.0 423.4 1.0

Calcium binding site 2 out of 2 in the Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Xpa Repositioning CORE7 of Tfiih Relative to Xpc-Dna Lesion (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ J:Ca401 b:450.7 occ:1.00 OD2 J:ASP154 2.6 445.7 1.0 OE1 J:GLU161 2.6 433.9 1.0 OD1 J:ASP154 2.6 445.7 1.0 O J:GLU156 2.7 441.1 1.0 OD1 J:ASP152 2.7 441.4 1.0 CG J:ASP154 2.9 445.7 1.0 OE2 J:GLU161 3.0 433.9 1.0 CD J:GLU161 3.0 433.9 1.0 N J:SER158 3.4 440.2 1.0 CG J:ASP152 3.4 441.4 1.0 OD2 J:ASP152 3.4 441.4 1.0 C J:GLU156 3.4 441.1 1.0 CA J:VAL157 3.6 437.1 1.0 C J:VAL157 3.8 437.1 1.0 N J:VAL157 3.8 437.1 1.0 OD1 J:ASP150 3.9 432.4 1.0 OG J:SER158 3.9 440.2 1.0 CB J:SER158 3.9 440.2 1.0 CA J:SER158 4.2 440.2 1.0 CG J:GLU161 4.3 433.9 1.0 CB J:ASP154 4.3 445.7 1.0 CA J:GLU156 4.6 441.1 1.0 N J:GLU156 4.6 441.1 1.0 O J:ALA149 4.7 418.4 1.0 CG J:GLU156 4.7 441.1 1.0 CA J:ASP150 4.7 432.4 1.0 N J:ARG151 4.7 427.5 1.0 O J:VAL157 4.8 437.1 1.0 CG J:ASP150 4.8 432.4 1.0 N J:ASP152 4.8 441.4 1.0 CB J:ASP152 4.8 441.4 1.0 N J:ASP154 4.9 445.7 1.0 CB J:VAL157 4.9 437.1 1.0 CB J:GLU161 5.0 433.9 1.0

J.Kim, C.L.Li, X.Chen, Y.Cui, F.M.Golebiowski, H.Wang, F.Hanaoka, K.Sugasawa, W.Yang. Lesion Recognition By Xpc, Tfiih and Xpa in Dna Excision Repair Nature 2023.
ISSN: ESSN 1476-4687