Atomistry » Calcium » PDB 8e51-8emw » 8em4
Atomistry »
  Calcium »
    PDB 8e51-8emw »
      8em4 »

Calcium in PDB 8em4: Cryo-Em Structure of LRP2 at pH 7.5

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 84;

Binding sites:

The binding sites of Calcium atom in the Cryo-Em Structure of LRP2 at pH 7.5 (pdb code 8em4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 84 binding sites of Calcium where determined in the Cryo-Em Structure of LRP2 at pH 7.5, PDB code: 8em4:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 1 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4745

b:30.0
occ:1.00
OD2 A:ASP52 2.3 74.2 1.0
O A:THR50 2.3 72.2 1.0
O A:TRP45 2.3 77.3 1.0
OD1 A:ASP48 2.3 78.3 1.0
OD2 A:ASP58 2.4 80.8 1.0
OE2 A:GLU59 2.8 81.8 1.0
CG A:ASP52 3.3 74.2 1.0
CG A:ASP48 3.4 78.3 1.0
C A:THR50 3.4 72.2 1.0
CD A:GLU59 3.5 81.8 1.0
C A:TRP45 3.5 77.3 1.0
O A:ARG46 3.6 81.9 1.0
CG A:ASP58 3.6 80.8 1.0
CG A:GLU59 3.8 81.8 1.0
OD2 A:ASP48 3.9 78.3 1.0
OG1 A:THR50 3.9 72.2 1.0
NZ B:LYS4337 4.0 65.7 1.0
N A:ASP52 4.0 74.2 1.0
C A:ARG46 4.0 81.9 1.0
N A:ASP48 4.1 78.3 1.0
OD1 A:ASP52 4.1 74.2 1.0
N A:THR50 4.1 72.2 1.0
CB A:ASP52 4.2 74.2 1.0
CB A:ASP58 4.3 80.8 1.0
CA A:THR50 4.3 72.2 1.0
CA A:TRP45 4.4 77.3 1.0
N A:ARG51 4.4 71.3 1.0
OE1 A:GLU59 4.4 81.8 1.0
N A:ARG46 4.5 81.9 1.0
CA A:ARG51 4.5 71.3 1.0
CB A:TRP45 4.5 77.3 1.0
CA A:ARG46 4.5 81.9 1.0
CB A:ASP48 4.6 78.3 1.0
OD1 A:ASP58 4.6 80.8 1.0
CB A:THR50 4.6 72.2 1.0
N A:CYS47 4.6 83.2 1.0
C A:ARG51 4.7 71.3 1.0
CA A:ASP48 4.7 78.3 1.0
CA A:ASP52 4.8 74.2 1.0
CA A:CYS47 4.9 83.2 1.0
N A:GLY49 4.9 77.0 1.0
C A:ASP48 4.9 78.3 1.0
C A:CYS47 5.0 83.2 1.0

Calcium binding site 2 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 2 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4746

b:30.0
occ:1.00
O A:ASP90 2.3 58.7 1.0
OD1 A:ASP88 2.3 64.3 1.0
O A:TRP85 2.3 59.2 1.0
OD2 A:ASP92 2.3 59.0 1.0
OE2 A:GLU99 2.4 65.3 1.0
OD2 A:ASP98 2.7 63.0 1.0
OD1 A:ASP98 2.8 63.0 1.0
CG A:ASP98 3.1 63.0 1.0
CG A:ASP92 3.1 59.0 1.0
C A:ASP90 3.4 58.7 1.0
CD A:GLU99 3.5 65.3 1.0
CG A:ASP88 3.5 64.3 1.0
C A:TRP85 3.5 59.2 1.0
OD1 A:ASP92 3.7 59.0 1.0
N A:ASP90 3.8 58.7 1.0
CA A:ASP90 3.9 58.7 1.0
NZ B:LYS4027 4.0 85.6 1.0
CG A:GLU99 4.0 65.3 1.0
CB A:ASP90 4.0 30.0 1.0
N A:ASP92 4.0 59.0 1.0
CB A:ASP92 4.0 59.0 1.0
N A:ASP88 4.1 64.3 1.0
OD2 A:ASP88 4.1 64.3 1.0
CA A:TRP85 4.2 59.2 1.0
CB A:TRP85 4.4 59.2 1.0
C A:VAL86 4.4 65.2 1.0
N A:LYS91 4.5 59.8 1.0
OE1 A:GLU99 4.5 65.3 1.0
N A:VAL86 4.5 65.2 1.0
O A:VAL86 4.6 65.2 1.0
CB A:ASP98 4.6 63.0 1.0
CB A:ASP88 4.6 64.3 1.0
N A:CYS87 4.6 71.9 1.0
CA A:VAL86 4.6 65.2 1.0
CA A:ASP88 4.7 64.3 1.0
C A:ASP88 4.7 64.3 1.0
CA A:ASP92 4.7 59.0 1.0
N A:GLN89 4.8 63.5 1.0
CA A:LYS91 4.9 59.8 1.0
N A:GLU99 4.9 65.3 1.0
C A:LYS91 4.9 59.8 1.0
CA A:CYS87 5.0 71.9 1.0
C A:CYS87 5.0 71.9 1.0

Calcium binding site 3 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 3 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4747

b:30.0
occ:1.00
O A:ASP244 2.3 70.6 1.0
O A:TRP239 2.3 66.9 1.0
OD1 A:ASP242 2.3 70.2 1.0
OD1 A:ASP246 2.5 70.2 1.0
OD2 A:ASP252 2.6 69.6 1.0
OE2 A:GLU253 2.6 70.0 1.0
CB A:ASP252 3.2 69.6 1.0
C A:ASP244 3.3 70.6 1.0
CG A:ASP252 3.3 69.6 1.0
CG A:ASP242 3.3 70.2 1.0
CG A:ASP246 3.5 70.2 1.0
C A:TRP239 3.5 66.9 1.0
N A:ASP244 3.6 70.6 1.0
CD A:GLU253 3.8 70.0 1.0
OD2 A:ASP242 3.8 70.2 1.0
CA A:ASP244 3.8 70.6 1.0
N A:ASP246 4.0 70.2 1.0
O A:VAL240 4.1 64.8 1.0
N A:ASP242 4.1 70.2 1.0
C A:VAL240 4.1 64.8 1.0
CB A:ASP244 4.1 70.6 1.0
CB A:ASP246 4.1 70.2 1.0
CG A:GLU253 4.2 70.0 1.0
N A:ASP245 4.4 72.0 1.0
N A:GLY243 4.4 70.5 1.0
N A:VAL240 4.4 64.8 1.0
CA A:TRP239 4.4 66.9 1.0
CA A:VAL240 4.4 64.8 1.0
OD2 A:ASP246 4.5 70.2 1.0
N A:CYS241 4.5 69.0 1.0
OD1 A:ASP252 4.5 69.6 1.0
CB A:TRP239 4.6 66.9 1.0
CB A:ASP242 4.6 70.2 1.0
CA A:CA4778 4.7 30.0 1.0
CA A:ASP252 4.7 69.6 1.0
CA A:ASP246 4.7 70.2 1.0
CA A:ASP242 4.7 70.2 1.0
C A:GLY243 4.7 70.5 1.0
OE1 A:GLU253 4.8 70.0 1.0
CA A:ASP245 4.8 72.0 1.0
C A:ASP242 4.9 70.2 1.0
CA A:CYS241 4.9 69.0 1.0
C A:ASP245 4.9 72.0 1.0
C A:CYS241 4.9 69.0 1.0

Calcium binding site 4 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 4 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4748

b:30.0
occ:1.00
OD2 A:ASP296 2.3 63.0 1.0
OD1 A:ASP286 2.3 64.3 1.0
O A:LYS283 2.4 59.2 1.0
O A:VAL288 2.4 58.7 1.0
OE2 A:GLU297 2.4 65.3 1.0
O A:VAL284 2.5 65.2 1.0
OD2 A:ASP290 2.6 59.0 1.0
C A:VAL284 3.2 65.2 1.0
CG A:ASP286 3.4 64.3 1.0
CD A:GLU297 3.4 65.3 1.0
CG A:ASP290 3.4 59.0 1.0
CG A:ASP296 3.5 63.0 1.0
C A:LYS283 3.5 59.2 1.0
C A:VAL288 3.5 58.7 1.0
N A:ASP286 3.7 64.3 1.0
CA A:VAL284 3.7 65.2 1.0
N A:VAL288 3.8 58.7 1.0
CG A:GLU297 3.8 65.3 1.0
N A:ASP290 4.0 59.0 1.0
N A:VAL284 4.1 65.2 1.0
OD2 A:ASP286 4.1 64.3 1.0
N A:CYS285 4.1 71.9 1.0
N A:GLY287 4.1 63.5 1.0
OD1 A:ASP290 4.1 59.0 1.0
CB A:ASP290 4.2 59.0 1.0
CA A:VAL288 4.2 58.7 1.0
CB A:ASP296 4.3 63.0 1.0
CB A:ASP286 4.3 64.3 1.0
OD1 A:ASP296 4.4 63.0 1.0
CA A:ASP286 4.4 64.3 1.0
OE1 A:GLU297 4.5 65.3 1.0
N A:PRO289 4.5 59.8 1.0
CA A:CYS285 4.5 71.9 1.0
C A:CYS285 4.5 71.9 1.0
CA A:PRO289 4.6 59.8 1.0
C A:ASP286 4.7 64.3 1.0
CA A:LYS283 4.7 59.2 1.0
C A:PRO289 4.7 59.8 1.0
CA A:ASP290 4.8 59.0 1.0
C A:GLY287 4.8 63.5 1.0
CB A:VAL288 4.8 30.0 1.0
CA A:GLY287 5.0 63.5 1.0
CB A:LYS283 5.0 30.0 1.0

Calcium binding site 5 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 5 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4749

b:30.0
occ:1.00
OD2 A:ASP1055 2.2 67.7 1.0
OD1 A:ASP1045 2.2 71.6 1.0
O A:PHE1042 2.3 65.6 1.0
O A:VAL1047 2.3 69.6 1.0
OD2 A:ASP1049 2.3 66.5 1.0
OE2 A:GLU1056 2.4 69.4 1.0
CG A:ASP1045 3.3 71.6 1.0
CG A:ASP1055 3.4 67.7 1.0
CG A:ASP1049 3.4 66.5 1.0
C A:VAL1047 3.5 69.6 1.0
C A:PHE1042 3.5 65.6 1.0
CD A:GLU1056 3.5 69.4 1.0
N A:VAL1047 3.8 69.6 1.0
N A:ASP1045 3.8 71.6 1.0
OD2 A:ASP1045 3.9 71.6 1.0
N A:ASP1049 3.9 66.5 1.0
CG A:GLU1056 4.0 69.4 1.0
CB A:ASP1049 4.0 66.5 1.0
O A:ARG1043 4.0 69.2 1.0
OD1 A:ASP1055 4.1 67.7 1.0
C A:ARG1043 4.2 69.2 1.0
CA A:PHE1042 4.2 65.6 1.0
CA A:VAL1047 4.2 69.6 1.0
N A:GLY1046 4.3 71.8 1.0
CB A:PHE1042 4.3 65.6 1.0
CB A:ASP1055 4.3 67.7 1.0
CG2 A:VAL1047 4.3 69.6 1.0
CB A:ASP1045 4.3 71.6 1.0
OD1 A:ASP1049 4.3 66.5 1.0
N A:CYS1044 4.5 72.6 1.0
N A:ARG1043 4.5 69.2 1.0
N A:ASP1048 4.5 66.8 1.0
CA A:ASP1045 4.5 71.6 1.0
OE1 A:GLU1056 4.6 69.4 1.0
CA A:ASP1049 4.7 66.5 1.0
CA A:CYS1044 4.7 72.6 1.0
CA A:ARG1043 4.7 69.2 1.0
C A:CYS1044 4.7 72.6 1.0
C A:ASP1045 4.8 71.6 1.0
CA A:ASP1048 4.8 66.8 1.0
C A:GLY1046 4.9 71.8 1.0
C A:ASP1048 4.9 66.8 1.0
CB A:VAL1047 4.9 69.6 1.0

Calcium binding site 6 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 6 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4750

b:30.0
occ:1.00
OD2 A:ASP1091 2.2 79.2 1.0
OD1 A:ASP1087 2.2 79.2 1.0
OE2 A:GLU1098 2.3 88.4 1.0
OD2 A:ASP1097 2.3 85.3 1.0
O A:GLN1089 2.3 77.1 1.0
O A:TRP1084 2.6 76.0 1.0
CG A:ASP1097 3.3 85.3 1.0
CG A:ASP1091 3.3 79.2 1.0
CG A:ASP1087 3.4 79.2 1.0
CD A:GLU1098 3.4 88.4 1.0
C A:GLN1089 3.4 77.1 1.0
CB A:ASP1097 3.8 85.3 1.0
C A:TRP1084 3.8 76.0 1.0
CG A:GLU1098 3.9 88.4 1.0
N A:ASP1087 3.9 79.2 1.0
OD2 A:ASP1087 3.9 79.2 1.0
N A:ASP1091 4.0 79.2 1.0
O A:ASP1087 4.1 79.2 1.0
CB A:ASP1091 4.1 79.2 1.0
OD1 A:ASP1091 4.2 79.2 1.0
CA A:GLN1089 4.3 77.1 1.0
OD1 A:ASP1097 4.4 85.3 1.0
N A:ASN1090 4.4 79.7 1.0
N A:GLN1089 4.4 77.1 1.0
CA A:TRP1084 4.4 76.0 1.0
OE1 A:GLU1098 4.4 88.4 1.0
CB A:GLN1089 4.4 77.1 1.0
C A:ASP1087 4.4 79.2 1.0
CA A:ASP1087 4.5 79.2 1.0
CB A:TRP1084 4.5 76.0 1.0
C A:ARG1085 4.5 81.8 1.0
CB A:ASP1087 4.5 79.2 1.0
CA A:ASN1090 4.5 79.7 1.0
NH1 A:ARG422 4.5 71.2 1.0
O A:ARG1085 4.6 81.8 1.0
N A:CYS1086 4.6 83.7 1.0
C A:CYS1086 4.7 83.7 1.0
CA A:ASP1091 4.7 79.2 1.0
CA A:CYS1086 4.7 83.7 1.0
C A:ASN1090 4.8 79.7 1.0
N A:ARG1085 4.8 81.8 1.0

Calcium binding site 7 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 7 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4751

b:30.0
occ:1.00
OD1 A:ASP1130 2.2 76.8 1.0
OD2 A:ASP1140 2.2 78.1 1.0
OD2 A:ASP1134 2.3 81.5 1.0
OE2 A:GLU1141 2.4 79.0 1.0
O A:TRP1127 2.5 83.8 1.0
O A:ASP1132 2.5 74.1 1.0
O A:VAL1128 2.6 83.5 1.0
CG A:ASP1130 3.1 76.8 1.0
CG A:ASP1134 3.3 81.5 1.0
CG A:ASP1140 3.3 78.1 1.0
C A:VAL1128 3.4 83.5 1.0
CD A:GLU1141 3.5 79.0 1.0
C A:TRP1127 3.6 83.8 1.0
OD2 A:ASP1130 3.7 76.8 1.0
C A:ASP1132 3.7 74.1 1.0
N A:ASP1130 3.8 76.8 1.0
CA A:VAL1128 3.9 83.5 1.0
CG A:GLU1141 4.0 79.0 1.0
CB A:ASP1134 4.0 81.5 1.0
OD1 A:ASP1134 4.1 81.5 1.0
CB A:ASP1130 4.1 76.8 1.0
CB A:ASP1140 4.1 78.1 1.0
N A:VAL1128 4.2 83.5 1.0
N A:ASP1132 4.2 74.1 1.0
OD1 A:ASP1140 4.2 78.1 1.0
N A:ASP1134 4.2 81.5 1.0
CA A:ASP1130 4.4 76.8 1.0
N A:CYS1129 4.4 80.5 1.0
CA A:ASP1132 4.5 74.1 1.0
OE1 A:GLU1141 4.5 79.0 1.0
C A:ASP1130 4.6 76.8 1.0
N A:THR1131 4.6 70.8 1.0
CA A:TRP1127 4.7 83.8 1.0
CB A:TRP1127 4.7 83.8 1.0
N A:ASN1133 4.8 76.0 1.0
C A:CYS1129 4.8 80.5 1.0
CA A:ASP1134 4.8 81.5 1.0
CA A:CYS1129 4.8 80.5 1.0
CB A:ASP1132 5.0 74.1 1.0

Calcium binding site 8 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 8 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4752

b:30.0
occ:1.00
OD2 A:ASP1174 2.3 73.5 1.0
O A:ASP1172 2.3 76.5 1.0
OE2 A:GLU1181 2.4 84.0 1.0
O A:TYR1167 2.4 79.9 1.0
OD2 A:ASP1170 2.4 78.8 1.0
OD2 A:ASP1180 2.6 79.5 1.0
OE1 A:GLU1181 2.6 84.0 1.0
CD A:GLU1181 2.8 84.0 1.0
CG A:ASP1170 3.3 78.8 1.0
CG A:ASP1174 3.3 73.5 1.0
C A:TYR1167 3.5 79.9 1.0
C A:ASP1172 3.5 76.5 1.0
CG A:ASP1180 3.6 79.5 1.0
OD1 A:ASP1170 3.6 78.8 1.0
CB A:ASP1180 3.9 79.5 1.0
CB A:ASP1174 4.0 73.5 1.0
N A:ASP1172 4.1 76.5 1.0
N A:ASP1170 4.1 78.8 1.0
N A:ASP1174 4.1 73.5 1.0
CA A:TYR1167 4.1 79.9 1.0
OD1 A:ASP1174 4.2 73.5 1.0
CA A:ASP1172 4.2 76.5 1.0
CG A:GLU1181 4.3 84.0 1.0
CB A:TYR1167 4.4 79.9 1.0
CB A:ASP1170 4.5 78.8 1.0
C A:VAL1168 4.5 80.1 1.0
CB A:ASP1172 4.5 76.5 1.0
N A:GLY1171 4.5 77.9 1.0
O A:VAL1168 4.5 80.1 1.0
N A:LYS1173 4.6 74.5 1.0
N A:VAL1168 4.6 80.1 1.0
N A:CYS1169 4.6 80.0 1.0
OD1 A:ASP1180 4.7 79.5 1.0
CA A:ASP1174 4.7 73.5 1.0
CA A:CYS1169 4.7 80.0 1.0
CA A:ASP1170 4.8 78.8 1.0
CA A:LYS1173 4.8 74.5 1.0
C A:CYS1169 4.9 80.0 1.0
C A:LYS1173 4.9 74.5 1.0
CA A:VAL1168 4.9 80.1 1.0

Calcium binding site 9 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 9 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4753

b:30.0
occ:1.00
OD2 A:ASP1213 2.2 70.5 1.0
OD1 A:ASP1209 2.2 66.7 1.0
OE2 A:GLU1220 2.2 76.0 1.0
OD2 A:ASP1219 2.2 72.4 1.0
O A:VAL1211 2.3 62.4 1.0
O A:TYR1206 2.3 70.4 1.0
CG A:ASP1213 3.2 70.5 1.0
CG A:ASP1209 3.2 66.7 1.0
CD A:GLU1220 3.2 76.0 1.0
CG A:ASP1219 3.4 72.4 1.0
C A:VAL1211 3.5 62.4 1.0
C A:TYR1206 3.5 70.4 1.0
OD2 A:ASP1209 3.6 66.7 1.0
CG A:GLU1220 3.7 76.0 1.0
CB A:ASP1213 3.9 70.5 1.0
OD1 A:ASP1213 4.0 70.5 1.0
N A:ASP1213 4.0 70.5 1.0
N A:VAL1211 4.1 62.4 1.0
CB A:ASP1219 4.2 72.4 1.0
N A:ASP1209 4.2 66.7 1.0
OE1 A:GLU1220 4.2 76.0 1.0
OD1 A:ASP1219 4.3 72.4 1.0
CA A:VAL1211 4.3 62.4 1.0
CA A:TYR1206 4.3 70.4 1.0
CB A:ASP1209 4.4 66.7 1.0
N A:ARG1207 4.4 73.0 1.0
N A:CYS1208 4.4 72.4 1.0
CB A:TYR1206 4.5 70.4 1.0
N A:TYR1212 4.5 68.7 1.0
CA A:ARG1207 4.5 73.0 1.0
NH2 A:ARG931 4.6 55.0 1.0
CA A:ASP1213 4.6 70.5 1.0
CB A:VAL1211 4.6 62.4 1.0
CA A:ASP1209 4.7 66.7 1.0
O A:ASP1219 4.7 72.4 1.0
CA A:TYR1212 4.7 68.7 1.0
C A:ARG1207 4.7 73.0 1.0
C A:TYR1212 4.8 68.7 1.0
C A:ASP1219 4.8 72.4 1.0
N A:GLY1210 4.8 63.8 1.0
C A:ASP1209 4.9 66.7 1.0

Calcium binding site 10 out of 84 in 8em4

Go back to Calcium Binding Sites List in 8em4
Calcium binding site 10 out of 84 in the Cryo-Em Structure of LRP2 at pH 7.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Cryo-Em Structure of LRP2 at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca4754

b:30.0
occ:1.00
OE2 A:GLU1263 2.2 65.3 1.0
OD2 A:ASP1256 2.3 59.0 1.0
OD2 A:ASP1262 2.3 63.0 1.0
OD1 A:ASP1252 2.3 64.3 1.0
O A:TRP1249 2.3 59.2 1.0
O A:HIS1254 2.3 58.7 1.0
CG A:ASP1256 3.4 59.0 1.0
CD A:GLU1263 3.4 65.3 1.0
CG A:ASP1252 3.4 64.3 1.0
CG A:ASP1262 3.4 63.0 1.0
C A:TRP1249 3.5 59.2 1.0
C A:HIS1254 3.5 58.7 1.0
CG A:GLU1263 3.9 65.3 1.0
N A:ASP1252 3.9 64.3 1.0
NH2 A:ARG846 3.9 57.6 1.0
OD2 A:ASP1252 4.0 64.3 1.0
N A:ASP1256 4.1 59.0 1.0
N A:CYS1251 4.1 71.9 1.0
N A:HIS1254 4.1 58.7 1.0
CB A:ASP1262 4.1 63.0 1.0
OD1 A:ASP1256 4.1 59.0 1.0
CB A:ASP1256 4.2 59.0 1.0
CA A:HIS1254 4.3 58.7 1.0
CA A:TRP1249 4.3 59.2 1.0
OD1 A:ASP1262 4.4 63.0 1.0
N A:GLU1250 4.4 65.2 1.0
OE1 A:GLU1263 4.4 65.3 1.0
CB A:TRP1249 4.5 59.2 1.0
CA A:GLU1250 4.5 65.2 1.0
C A:GLU1250 4.5 65.2 1.0
CB A:HIS1254 4.5 58.7 1.0
N A:PRO1255 4.5 59.8 1.0
CB A:ASP1252 4.6 64.3 1.0
O A:ASP1262 4.6 63.0 1.0
CA A:ASP1252 4.6 64.3 1.0
CA A:PRO1255 4.7 59.8 1.0
C A:ASP1252 4.7 64.3 1.0
C A:PRO1255 4.8 59.8 1.0
CA A:CYS1251 4.8 71.9 1.0
C A:ASP1262 4.8 63.0 1.0
CA A:ASP1256 4.8 59.0 1.0
C A:CYS1251 4.8 71.9 1.0
N A:GLY1253 4.9 63.5 1.0
ND1 A:HIS1254 5.0 58.7 1.0

Reference:

A.Beenken, G.Cerutti, A.W.Fitzpatrick, J.Barasch, L.Shapiro. Cryo-Em Structure of LRP2 Cell(Cambridge,Mass.) 2023.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2023.01.016
Page generated: Thu Jul 10 04:13:55 2025

Last articles

Cl in 5HM0
Cl in 5HLY
Cl in 5HLV
Cl in 5HLW
Cl in 5HLN
Cl in 5HLL
Cl in 5HLS
Cl in 5HKO
Cl in 5HKA
Cl in 5HLI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy