Atomistry » Calcium » PDB 8e51-8emw » 8emr
Atomistry »
  Calcium »
    PDB 8e51-8emw »
      8emr »

Calcium in PDB 8emr: Cryo-Em Structure of Human Liver Glucosidase II

Enzymatic activity of Cryo-Em Structure of Human Liver Glucosidase II

All present enzymatic activity of Cryo-Em Structure of Human Liver Glucosidase II:
3.2.1.207;

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Human Liver Glucosidase II (pdb code 8emr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of Human Liver Glucosidase II, PDB code: 8emr:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 8emr

Go back to Calcium Binding Sites List in 8emr
Calcium binding site 1 out of 2 in the Cryo-Em Structure of Human Liver Glucosidase II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Human Liver Glucosidase II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca601

b:119.9
occ:1.00
O B:ARG91 2.3 114.0 1.0
O B:VAL96 2.3 111.4 1.0
OD2 B:ASP104 2.3 125.6 1.0
OE2 B:GLU105 2.4 122.9 1.0
OD2 B:ASP98 2.4 129.3 1.0
OD1 B:ASP94 2.4 116.2 1.0
CG B:ASP104 3.0 125.7 1.0
CG B:ASP94 3.3 112.2 1.0
CB B:ASP104 3.3 121.6 1.0
OD2 B:ASP94 3.5 112.5 1.0
C B:ARG91 3.5 112.9 1.0
CG B:ASP98 3.5 128.0 1.0
C B:VAL96 3.5 108.5 1.0
CD B:GLU105 3.6 119.7 1.0
OD1 B:ASP104 3.9 128.5 1.0
N B:ASP98 3.9 129.0 1.0
CB B:ASP98 4.1 121.3 1.0
CA B:ARG91 4.2 111.0 1.0
CA B:CYS97 4.3 118.6 1.0
CB B:ARG91 4.3 110.1 1.0
N B:CYS97 4.3 116.3 1.0
C B:CYS97 4.3 123.5 1.0
OE1 B:GLU105 4.4 118.9 1.0
N B:VAL96 4.4 110.7 1.0
N B:VAL92 4.5 106.8 1.0
N B:ASP94 4.5 116.2 1.0
OD1 B:ASP98 4.5 129.2 1.0
CA B:VAL96 4.5 111.0 1.0
CG B:GLU105 4.6 122.6 1.0
CA B:ASP104 4.6 117.5 1.0
CA B:VAL92 4.6 101.7 1.0
N B:ASN93 4.6 113.4 1.0
CB B:ASP94 4.7 112.8 1.0
CA B:ASP98 4.7 123.6 1.0
C B:ASP104 4.7 121.8 1.0
C B:VAL92 4.9 104.2 1.0
O B:ASP104 4.9 123.5 1.0

Calcium binding site 2 out of 2 in 8emr

Go back to Calcium Binding Sites List in 8emr
Calcium binding site 2 out of 2 in the Cryo-Em Structure of Human Liver Glucosidase II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of Human Liver Glucosidase II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca602

b:96.6
occ:1.00
OD1 B:ASP53 2.3 106.0 1.0
O B:GLN50 2.3 104.7 1.0
OD2 B:ASP63 2.3 118.3 1.0
O B:TYR55 2.3 96.1 1.0
OD2 B:ASP57 2.4 118.7 1.0
OE2 B:GLU64 2.4 117.9 1.0
CG B:ASP53 3.3 106.1 1.0
CG B:ASP57 3.4 117.9 1.0
C B:TYR55 3.5 97.0 1.0
CD B:GLU64 3.5 110.7 1.0
C B:GLN50 3.5 107.5 1.0
CG B:ASP63 3.5 118.5 1.0
OD2 B:ASP53 3.6 109.8 1.0
CG B:GLU64 4.1 103.5 1.0
OD1 B:ASP57 4.1 115.0 1.0
N B:ASP57 4.1 112.8 1.0
N B:TYR55 4.2 101.4 1.0
CB B:ASP63 4.2 118.2 1.0
N B:ASP53 4.2 103.0 1.0
CA B:TYR55 4.2 97.2 1.0
CB B:ASP57 4.3 112.7 1.0
NH2 A:ARG929 4.3 85.3 1.0
O B:ASP63 4.3 120.0 1.0
CB B:GLN50 4.3 108.8 1.0
CB B:TYR55 4.4 99.9 1.0
N B:ASN52 4.4 107.7 1.0
CA B:GLN50 4.4 107.8 1.0
N B:VAL51 4.4 115.8 1.0
CA B:VAL51 4.5 114.9 1.0
N B:CYS56 4.5 103.0 1.0
OE1 B:GLU64 4.5 113.2 1.0
OD1 B:ASP63 4.5 120.5 1.0
CB B:ASP53 4.5 104.5 1.0
C B:VAL51 4.7 118.2 1.0
CA B:CYS56 4.7 107.3 1.0
C B:ASP63 4.8 119.4 1.0
CA B:ASP53 4.8 104.2 1.0
CA B:ASP57 4.8 110.3 1.0
C B:CYS56 4.9 107.8 1.0
CD1 B:ILE46 5.0 117.0 1.0

Reference:

C.Su, M.Lyu, Z.Zhang, E.W.Yu. Cryo-Em Structure of Human Liver Glucosidase II To Be Published.
Page generated: Thu Jul 10 04:14:11 2025

Last articles

Cl in 8B7W
Cl in 8B56
Cl in 8B7B
Cl in 8B7A
Cl in 8B78
Cl in 8B6T
Cl in 8B6S
Cl in 8B75
Cl in 8B6P
Cl in 8B6R
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy