Calcium in PDB 8fmt: Complex Structure of Tnnt-R205L Troponin Complex

The structure of Complex Structure of Tnnt-R205L Troponin Complex, PDB code: 8fmt was solved by P.Wang, M.Ahmed, H.Sadek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.63 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.682, 169.904, 69.795, 90, 101.38, 90
R / Rfree (%)	24.2 / 30

The binding sites of Calcium atom in the Complex Structure of Tnnt-R205L Troponin Complex (pdb code 8fmt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Complex Structure of Tnnt-R205L Troponin Complex, PDB code: 8fmt:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:27.3 occ:1.00 OD1 A:ASP67 2.4 35.8 1.0 O A:THR71 2.5 29.3 1.0 OD1 A:ASP65 2.5 30.2 1.0 OG A:SER69 2.5 36.0 1.0 OE1 A:GLU76 2.5 30.1 1.0 OE2 A:GLU76 2.9 32.2 1.0 CD A:GLU76 3.1 25.5 1.0 CG A:ASP67 3.4 36.5 1.0 C A:THR71 3.4 27.8 1.0 CG A:ASP65 3.6 34.6 1.0 CB A:SER69 3.8 29.7 1.0 OD2 A:ASP67 3.8 32.8 1.0 OG1 A:THR71 4.0 31.6 1.0 N A:VAL72 4.2 27.7 1.0 CA A:VAL72 4.2 22.4 1.0 N A:THR71 4.2 30.9 1.0 N A:ASP73 4.4 20.1 1.0 OD2 A:ASP65 4.4 33.6 1.0 CA A:THR71 4.4 27.2 1.0 N A:SER69 4.4 38.0 1.0 CB A:ASP65 4.5 30.8 1.0 OD1 A:ASP73 4.5 24.4 1.0 CG A:GLU76 4.6 22.2 1.0 CA A:ASP65 4.6 33.1 1.0 CG A:ASP73 4.6 23.3 1.0 CB A:ASP67 4.6 36.1 1.0 CA A:SER69 4.6 32.0 1.0 OD2 A:ASP73 4.6 22.7 1.0 C A:VAL72 4.7 20.1 1.0 N A:ASP67 4.8 38.0 1.0 CB A:THR71 4.8 24.8 1.0 N A:GLY70 5.0 27.7 1.0 C A:SER69 5.0 28.2 1.0

Calcium binding site 2 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:26.8 occ:1.00 OD1 A:ASN107 2.4 34.9 1.0 OE1 A:GLU116 2.4 38.0 1.0 O A:TYR111 2.5 30.1 1.0 OD1 A:ASP109 2.5 33.1 1.0 OD1 A:ASP105 2.8 29.8 1.0 CD A:GLU116 3.1 34.7 1.0 OE2 A:GLU116 3.2 33.0 1.0 CG A:ASP109 3.2 35.6 1.0 OD2 A:ASP113 3.2 48.0 1.0 OD2 A:ASP109 3.3 34.5 1.0 CG A:ASN107 3.4 35.5 1.0 C A:TYR111 3.5 29.6 1.0 CG A:ASP105 3.8 31.8 1.0 CG A:ASP113 4.0 50.8 1.0 ND2 A:ASN107 4.1 27.7 1.0 N A:ASP113 4.1 41.7 1.0 N A:TYR111 4.3 28.9 1.0 CA A:TYR111 4.3 28.7 1.0 N A:ILE112 4.3 33.4 1.0 CA A:ILE112 4.4 35.6 1.0 CG A:GLU116 4.4 34.3 1.0 CB A:ASP109 4.5 33.9 1.0 OD2 A:ASP105 4.5 28.6 1.0 CB A:ASN107 4.5 32.3 1.0 CB A:TYR111 4.5 27.5 1.0 N A:ASP109 4.6 29.9 1.0 CA A:ASP105 4.7 25.6 1.0 CB A:ASP105 4.7 26.2 1.0 OD1 A:ASP113 4.7 46.1 1.0 CB A:ASP113 4.7 49.1 1.0 C A:ILE112 4.8 39.1 1.0 N A:ASN107 4.9 30.1 1.0 N A:ALA108 5.0 29.4 1.0

Calcium binding site 3 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:44.3 occ:1.00 O A:ARG147 2.4 40.5 1.0 OE1 A:GLU152 2.4 40.9 1.0 ND2 A:ASN143 2.5 42.0 1.0 OD1 A:ASP145 2.6 59.5 1.0 OD1 A:ASP141 2.8 46.0 1.0 OE2 A:GLU152 2.8 44.2 1.0 CD A:GLU152 3.0 39.5 1.0 OD1 A:ASN143 3.0 44.7 1.0 CG A:ASN143 3.1 48.0 1.0 C A:ARG147 3.6 48.5 1.0 CG A:ASP145 3.6 52.4 1.0 OD2 A:ASP149 3.7 38.1 1.0 CG A:ASP141 3.8 54.8 1.0 OD2 A:ASP145 4.0 46.6 1.0 N A:ASP149 4.1 33.6 1.0 CG A:ARG147 4.2 34.8 1.0 CA A:ILE148 4.2 36.0 1.0 N A:ILE148 4.3 41.3 1.0 CG A:ASP149 4.4 33.4 1.0 CG A:GLU152 4.4 35.3 1.0 CB A:ASN143 4.5 55.1 1.0 CB A:ASP141 4.5 48.7 1.0 CA A:ARG147 4.6 54.4 1.0 N A:ARG147 4.6 57.4 1.0 C A:ILE148 4.6 38.7 1.0 CA A:ASP141 4.6 44.4 1.0 N A:ASN143 4.7 62.3 1.0 OD2 A:ASP141 4.7 52.2 1.0 CB A:ASP149 4.7 27.6 1.0 N A:ASP145 4.7 58.9 1.0 CB A:ASP145 4.9 45.4 1.0 N A:LYS142 4.9 44.4 1.0 CB A:ARG147 5.0 40.7 1.0 CB A:GLU152 5.0 29.7 1.0

Calcium binding site 4 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca201 b:70.0 occ:1.00 OG D:SER69 2.5 76.1 1.0 O D:THR71 2.6 63.7 1.0 OD1 D:ASP67 2.6 87.5 1.0 OE1 D:GLU76 2.9 62.7 1.0 OD2 D:ASP67 2.9 85.9 1.0 OE2 D:GLU76 3.1 66.5 1.0 CG D:ASP67 3.1 88.9 1.0 OD2 D:ASP73 3.2 58.7 1.0 CD D:GLU76 3.4 63.0 1.0 C D:THR71 3.5 60.5 1.0 OG1 D:THR71 3.8 60.6 1.0 CB D:SER69 3.8 77.3 1.0 OD1 D:ASP65 4.0 80.0 1.0 CG D:ASP65 4.0 78.9 1.0 OD2 D:ASP65 4.1 77.3 1.0 N D:THR71 4.2 70.9 1.0 CG D:ASP73 4.3 54.9 1.0 CA D:THR71 4.3 64.4 1.0 N D:SER69 4.3 82.3 1.0 N D:VAL72 4.4 59.1 1.0 CA D:SER69 4.6 82.0 1.0 CB D:THR71 4.6 60.8 1.0 N D:ASP73 4.6 54.3 1.0 CB D:ASP67 4.6 88.3 1.0 CA D:VAL72 4.6 52.0 1.0 CB D:ASP65 4.8 74.7 1.0 CG D:GLU76 4.8 54.8 1.0 N D:GLY68 4.9 71.3 1.0 C D:SER69 4.9 71.7 1.0 N D:GLY70 5.0 77.4 1.0 C D:VAL72 5.0 50.0 1.0 OD1 D:ASP73 5.0 57.4 1.0

Calcium binding site 5 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca202 b:34.3 occ:1.00 OD1 D:ASN107 2.3 43.2 1.0 O D:TYR111 2.3 31.8 1.0 OE1 D:GLU116 2.5 39.6 1.0 OD1 D:ASP109 2.5 33.3 1.0 OD1 D:ASP105 2.5 33.6 1.0 OE2 D:GLU116 2.7 39.2 1.0 CD D:GLU116 3.0 39.4 1.0 CG D:ASP109 3.1 37.8 1.0 OD2 D:ASP109 3.1 39.5 1.0 CG D:ASN107 3.4 36.9 1.0 C D:TYR111 3.5 30.4 1.0 CG D:ASP105 3.6 35.2 1.0 ND2 D:ASN107 4.0 35.7 1.0 N D:TYR111 4.3 38.8 1.0 N D:ILE112 4.3 33.3 1.0 OD2 D:ASP105 4.3 31.5 1.0 N D:ASP109 4.4 35.2 1.0 CA D:TYR111 4.4 32.3 1.0 CA D:ILE112 4.4 36.7 1.0 CB D:ASP109 4.4 34.5 1.0 CA D:ASP105 4.4 33.4 1.0 CG D:GLU116 4.5 38.2 1.0 CB D:ASP105 4.5 33.3 1.0 N D:ASP113 4.6 43.3 1.0 N D:ASN107 4.6 37.9 1.0 CB D:ASN107 4.6 32.2 1.0 CG D:ASP113 4.7 52.5 1.0 OD2 D:ASP113 4.7 56.8 1.0 N D:ALA108 4.7 44.2 1.0 CB D:TYR111 4.8 36.7 1.0 CA D:ASP109 4.8 34.7 1.0 C D:ASP105 4.9 39.0 1.0 C D:ILE112 4.9 43.7 1.0 OD1 D:ASP113 4.9 47.6 1.0 N D:LYS106 4.9 39.2 1.0 CB D:ASP113 5.0 47.8 1.0

Calcium binding site 6 out of 6 in the Complex Structure of Tnnt-R205L Troponin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Complex Structure of Tnnt-R205L Troponin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca203 b:40.9 occ:1.00 OD1 D:ASN143 2.4 51.7 1.0 O D:ARG147 2.4 42.1 1.0 OE1 D:GLU152 2.5 44.5 1.0 OD1 D:ASP145 2.5 50.5 1.0 OE2 D:GLU152 2.8 43.5 1.0 CD D:GLU152 2.9 45.2 1.0 OD1 D:ASP141 2.9 52.5 1.0 OD2 D:ASP145 2.9 49.3 1.0 CG D:ASP145 3.0 53.2 1.0 CG D:ASN143 3.5 56.1 1.0 C D:ARG147 3.6 43.9 1.0 CG D:ASP141 3.8 54.6 1.0 ND2 D:ASN143 4.1 46.9 1.0 CG D:GLU152 4.2 36.4 1.0 CA D:ASP141 4.2 48.1 1.0 CB D:ASP141 4.3 47.7 1.0 CA D:ILE148 4.4 35.4 1.0 OD2 D:ASP149 4.4 37.9 1.0 N D:ILE148 4.4 40.0 1.0 N D:ASP149 4.4 38.2 1.0 CB D:ASP145 4.5 54.0 1.0 N D:ARG147 4.6 54.9 1.0 CG D:ARG147 4.6 41.4 1.0 N D:ASN143 4.6 53.9 1.0 OD2 D:ASP141 4.7 55.8 1.0 CA D:ARG147 4.7 54.6 1.0 N D:ASP145 4.7 52.5 1.0 C D:ILE148 4.7 37.2 1.0 N D:LYS142 4.7 51.6 1.0 C D:ASP141 4.7 51.5 1.0 CB D:ASN143 4.7 54.1 1.0 CG D:ASP149 4.8 36.2 1.0

P.Wang, M.Ahmed, H.Sadek. Structural and Phenotypic Correction of K210DEL Genetic Cardiomyopathy By An Fda Approved Drug To Be Published.